BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0212.p (1145 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0F7.1 D8J0F7_HERSS Transcription-repair ATP-dependent couplin... 2342 0.0 A6SXV1.1 A6SXV1_JANMA Transcription-repair coupling factor (Supe... 1980 0.0 A4G6C7.1 A4G6C7_HERAR Transcription-repair-coupling factor (TRCF... 1968 0.0 F1W4H8.1 F1W4H8_9BURK Transcription-repair coupling factor 1910 0.0 C3X222.1 C3X222_OXAFO Transcription-repair coupling factor 1809 0.0 C3XA83.1 C3XA83_OXAFO Transcription-repair coupling factor 1798 0.0 D8NIS0.1 D8NIS0_RALSO Transcription-repair ATP-dependent couplin... 1711 0.0 B5SKB5.1 B5SKB5_RALSO Transcription-repair coupling factor protein 1711 0.0 A3RPK0.1 A3RPK0_RALSO Transcription-repair coupling factor 1711 0.0 B5S385.1 B5S385_RALSO Transcription-repair coupling factor protein 1709 0.0 >D8J0F7.1 D8J0F7_HERSS Transcription-repair ATP-dependent coupling factor (Helicase superfamily II) protein Length = 1145 Score = 2342 bits (6070), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1143/1145 (99%), Positives = 1143/1145 (99%) Query: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE Sbjct: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 Query: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA Sbjct: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 Query: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP Sbjct: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 Query: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWRE 240 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDE SRLAFRNRWRE Sbjct: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEASRLAFRNRWRE 240 Query: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR Sbjct: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 Query: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN Sbjct: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 Query: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA Sbjct: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 Query: 421 SDEPLMLGVAPLHAGFVTAAGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK 480 SDEPLMLGVAPLHAGFVTAAGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK Sbjct: 421 SDEPLMLGVAPLHAGFVTAAGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELK 480 Query: 481 IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE 540 IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE Sbjct: 481 IGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPE 540 Query: 541 DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG 600 DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG Sbjct: 541 DAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFG 600 Query: 601 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 660 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT Sbjct: 601 FEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPT 660 Query: 661 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 720 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV Sbjct: 661 TLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEV 720 Query: 721 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 780 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT Sbjct: 721 KFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIAT 780 Query: 781 APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPEARI 840 APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKA LEQLLPEARI Sbjct: 781 APQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAALEQLLPEARI 840 Query: 841 GVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 900 GVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ Sbjct: 841 GVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQ 900 Query: 901 LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 960 LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV Sbjct: 901 LRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEV 960 Query: 961 LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG 1020 LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG Sbjct: 961 LGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCG 1020 Query: 1021 DVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI 1080 DVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI Sbjct: 1021 DVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKI 1080 Query: 1081 DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATM 1140 DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATM Sbjct: 1081 DAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATM 1140 Query: 1141 KALTG 1145 KALTG Sbjct: 1141 KALTG 1145 >A6SXV1.1 A6SXV1_JANMA Transcription-repair coupling factor (Superfamily II helicase) Length = 1147 Score = 1980 bits (5129), Expect = 0.0, Method: Compositional matrix adjust. Identities = 949/1146 (82%), Positives = 1045/1146 (91%), Gaps = 4/1146 (0%) Query: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 MSFD KKSLPK RF P VHGSADA++LAQAA LK++ RML VVVA A+DAQRLLAE Sbjct: 1 MSFDLKKSLPKPATRFVLPPVHGSADAFVLAQAAAELKSQKRMLTVVVANASDAQRLLAE 60 Query: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 IPWF SE LRCHLLPDWETLPYDAFSPHQDLVSERLATLYEV +GQCD+LIVPATTA Sbjct: 61 IPWFG-SEPNELRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLIVPATTA 119 Query: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 L+RMAPP FLA+YTFFFKQGE LDE KLK+QL LAGY+ V QVMSPGEYSVRGGLIDI+P Sbjct: 120 LVRMAPPAFLASYTFFFKQGETLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGGLIDIYP 179 Query: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWRE 240 MGSVLPYR+DLFGDTI++IRTFDAD+QRSLYPV EVRLLP REFPMDE +R AFR RWRE Sbjct: 180 MGSVLPYRIDLFGDTIDSIRTFDADSQRSLYPVKEVRLLPAREFPMDEEARTAFRGRWRE 239 Query: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 +FEGDPSRS IYKDIG+GIASAGIEYYLPLFFE+T TLF YLPA+ FA +GDIE AIKR Sbjct: 240 IFEGDPSRSVIYKDIGSGIASAGIEYYLPLFFEQTNTLFDYLPADTTFALIGDIEAAIKR 299 Query: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 FW DT+SR+ FL +DRERP+L P+ I+L DE+FFTL KP+ RW+++ D S +SAPLPN Sbjct: 300 FWDDTQSRYRFLKSDRERPILAPEQIFLSDENFFTLAKPYGRWIIQNQDVASELSAPLPN 359 Query: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 IAVNRRADDPLVNLR++LL+ +RV+ICAESNGRRETLQQYF EYDL E + F + Sbjct: 360 IAVNRRADDPLVNLRAYLLQTDKRVMICAESNGRRETLQQYFNEYDLPLAATEGFADFSS 419 Query: 421 SDEPLMLGVAPLHAGFVTA---AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLS 477 + LMLGVAP+HAGF GLA +TETELYAGSGRRVGS+KQ+ AT VE MVRDLS Sbjct: 420 ASAKLMLGVAPMHAGFELGNALGGLAFITETELYAGSGRRVGSKKQEGATQVESMVRDLS 479 Query: 478 ELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGA 537 ELKIGDPVVH +HGIGRYMGL SMDLGEGETEFLHLEYAK+TKLYVPVSQLHVISRYSGA Sbjct: 480 ELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGA 539 Query: 538 SPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFAD 597 SPEDAPLHALGSGQWEKAKR+AA+++RDTAAELLNLYARRALR+GH+F+YSAHDYEAFA+ Sbjct: 540 SPEDAPLHALGSGQWEKAKRRAAEKIRDTAAELLNLYARRALREGHSFEYSAHDYEAFAE 599 Query: 598 SFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAIL 657 SFGFEETADQAAAINAVIKDMT GKPMDRLICGDVGFGKTEVALRAAFVAV+GGKQVAIL Sbjct: 600 SFGFEETADQAAAINAVIKDMTSGKPMDRLICGDVGFGKTEVALRAAFVAVLGGKQVAIL 659 Query: 658 APTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLS 717 APTTLLAEQHA TFADRFA+WPV+IAELSRFRT KEVTQAIKG+ DGTIDIVIGTHKLLS Sbjct: 660 APTTLLAEQHAQTFADRFADWPVRIAELSRFRTAKEVTQAIKGMADGTIDIVIGTHKLLS 719 Query: 718 DEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSV 777 ++KFSRLGLVIIDEEHRFGVRQKEALK+LRAEVDVLTLTATPIPRTLGMALEGLRDFS+ Sbjct: 720 GDIKFSRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI 779 Query: 778 IATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPE 837 IATAPQKRLAIKTFVR+E +S IREACLRELKRGGQVYFLHNEVETI NRKA LE+L+PE Sbjct: 780 IATAPQKRLAIKTFVRSENDSVIREACLRELKRGGQVYFLHNEVETIQNRKAMLEELMPE 839 Query: 838 ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 897 ARIGVAHGQ+HERDLE++MRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ Sbjct: 840 ARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 899 Query: 898 LHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA 957 LHQLRGRVGRSHHQAYAYLLV DVQGLSK AQRRL+AIQQMEELGSGFYLAMHDLEIRGA Sbjct: 900 LHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGA 959 Query: 958 GEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPND 1017 GEVLGD+QSGE+ EIGFQ+YSDMLNEAVR+LK+G+EPDLAAPL++TTEINLH PALLPN Sbjct: 960 GEVLGDNQSGEMSEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLASTTEINLHVPALLPNT 1019 Query: 1018 FCGDVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGI 1077 +CGDVHERLS+YKRLANC+ +DAI+ LQEELIDRFGKLPDAA+AL+ETHRLR+AA P+GI Sbjct: 1020 YCGDVHERLSIYKRLANCKTADAINDLQEELIDRFGKLPDAAQALVETHRLRVAAIPVGI 1079 Query: 1078 IKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVK 1137 IKIDAH+E+A LQF PNPPIDAMRIIEL+QKNR +KLNG DKLRITASMPDL ARV Q+K Sbjct: 1080 IKIDAHAESATLQFEPNPPIDAMRIIELIQKNRHIKLNGQDKLRITASMPDLAARVSQIK 1139 Query: 1138 ATMKAL 1143 T++AL Sbjct: 1140 NTIRAL 1145 >A4G6C7.1 A4G6C7_HERAR Transcription-repair-coupling factor (TRCF) (ATP-dependent helicase Mfd) EC=3.6.1.- Length = 1148 Score = 1968 bits (5098), Expect = 0.0, Method: Compositional matrix adjust. Identities = 944/1146 (82%), Positives = 1044/1146 (91%), Gaps = 3/1146 (0%) Query: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 MSFD KKSLPK RF PAVHGSADAY+LAQAA LK++ RMLAVVVA A+DAQRLLAE Sbjct: 1 MSFDLKKSLPKPASRFVLPAVHGSADAYVLAQAAAELKSQKRMLAVVVANASDAQRLLAE 60 Query: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 IPWF E+ RCHLLPDWETLPYDAFSPHQDLVSERLATLYEV +GQCD+LIVPATTA Sbjct: 61 IPWFTGEGQEKPRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVLNGQCDVLIVPATTA 120 Query: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 L+RMAPP FLA+YTFFFKQGEKLDE KLK+QL LAGY+ V QVMSPGEYSVRGGLIDIFP Sbjct: 121 LVRMAPPAFLASYTFFFKQGEKLDEAKLKAQLQLAGYSPVKQVMSPGEYSVRGGLIDIFP 180 Query: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWRE 240 MG+VLPYR+DLFGDTI+TIRTFDADTQRSLYPV EVRLLP REFPMDE +R FR RWRE Sbjct: 181 MGAVLPYRIDLFGDTIDTIRTFDADTQRSLYPVREVRLLPAREFPMDEEARTTFRGRWRE 240 Query: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 +FEGDPSRS IYKDIG+GIASAGIEYYLPLFFEET TLF YLP + FA VGDI++AI+R Sbjct: 241 IFEGDPSRSMIYKDIGSGIASAGIEYYLPLFFEETKTLFDYLPPDTTFALVGDIDEAIRR 300 Query: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 FWSDT+SR++FL +DRERP+L P+ I+L DE+FFTL KP RWV++++D S +SA LPN Sbjct: 301 FWSDTQSRYSFLKSDRERPLLAPEQIFLSDENFFTLAKPFGRWVIQSEDVASELSASLPN 360 Query: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 IAVNRRADDPLVNLRS+LL+ +RVLICAESNGRRETLQQYF EY+L +D+ F Sbjct: 361 IAVNRRADDPLVNLRSWLLQTDKRVLICAESNGRRETLQQYFNEYNLALTPADDFADFST 420 Query: 421 SDEPLMLGVAPLHAGFVTAA---GLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLS 477 + LMLGVAP+HAGF A GLA +TETELYAGSGRR+GS+KQ+ AT VE MVRDLS Sbjct: 421 ASAKLMLGVAPMHAGFELGAALGGLAFITETELYAGSGRRIGSKKQEGATQVEAMVRDLS 480 Query: 478 ELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGA 537 ELKIGDPVVH +HGIGRYMGL SMDLGEGETEFLHLEYAK+TKLYVPVSQLHVISRYSGA Sbjct: 481 ELKIGDPVVHVNHGIGRYMGLTSMDLGEGETEFLHLEYAKDTKLYVPVSQLHVISRYSGA 540 Query: 538 SPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFAD 597 SPEDAPLHALGSGQWEKAKR+AA+++RDTAAELLNLYARRALR+GH+F+YSAHDY AFAD Sbjct: 541 SPEDAPLHALGSGQWEKAKRRAAEKIRDTAAELLNLYARRALREGHSFEYSAHDYAAFAD 600 Query: 598 SFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAIL 657 SFGFEET DQAAAINAVI+DMT GKPMDRLICGDVGFGKTEVALRAAF+AV+GGKQVAIL Sbjct: 601 SFGFEETVDQAAAINAVIQDMTSGKPMDRLICGDVGFGKTEVALRAAFIAVLGGKQVAIL 660 Query: 658 APTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLS 717 APTTLLAEQHA TFADRFA+WPV+IAELSRFR+GKE+TQA+KG+ DGTIDIVIGTHKLLS Sbjct: 661 APTTLLAEQHAQTFADRFADWPVRIAELSRFRSGKEITQAMKGMADGTIDIVIGTHKLLS 720 Query: 718 DEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSV 777 + KFSRLGLVIIDEEHRFGVRQKE LK+LRAEVDVLTLTATPIPRTLGMALEGLRDFS+ Sbjct: 721 ADTKFSRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMALEGLRDFSI 780 Query: 778 IATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPE 837 IATAPQKRLAIKTFVR+E S IREACLRELKRGGQVYFLHNEVETI NRKA LE+L+PE Sbjct: 781 IATAPQKRLAIKTFVRSENASVIREACLRELKRGGQVYFLHNEVETIENRKAMLEELMPE 840 Query: 838 ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 897 ARIGVAHGQ+HERDLE++MRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ Sbjct: 841 ARIGVAHGQLHERDLERIMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 900 Query: 898 LHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA 957 LHQLRGRVGRSHHQAYAYLLV DVQGLSK AQRRL+AIQQMEELGSGFYLAMHDLEIRGA Sbjct: 901 LHQLRGRVGRSHHQAYAYLLVHDVQGLSKLAQRRLDAIQQMEELGSGFYLAMHDLEIRGA 960 Query: 958 GEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPND 1017 GEVLGD+QSGE+ EIGFQ+YSDMLNEAVR+LK+G+EPDLAAPL+TTTEINLH PALLP+ Sbjct: 961 GEVLGDNQSGEMTEIGFQLYSDMLNEAVRSLKNGKEPDLAAPLATTTEINLHVPALLPST 1020 Query: 1018 FCGDVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGI 1077 +CGDVHERLS+YKRLANC+ DA++ LQEELIDRFGKLPDAA+AL+ETHRLR+AA P+GI Sbjct: 1021 YCGDVHERLSIYKRLANCKTQDAVNDLQEELIDRFGKLPDAAQALVETHRLRVAAVPVGI 1080 Query: 1078 IKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVK 1137 IKIDAH+E+A LQF PNPPIDAMRIIEL+QKNR +KL+G DKLRITA+MPDL ARV Q+K Sbjct: 1081 IKIDAHAESATLQFEPNPPIDAMRIIELIQKNRHIKLSGQDKLRITANMPDLAARVLQIK 1140 Query: 1138 ATMKAL 1143 T++AL Sbjct: 1141 NTIRAL 1146 >F1W4H8.1 F1W4H8_9BURK Transcription-repair coupling factor Length = 1120 Score = 1910 bits (4948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 916/1120 (81%), Positives = 1005/1120 (89%), Gaps = 3/1120 (0%) Query: 29 LLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSEGERLRCHLLPDWETLPYDAF 88 +LAQA ALKA+ +MLA+VVA A DAQRLL EIPWF LRCHLLPDWETLPYDAF Sbjct: 1 MLAQAGAALKAQNKMLAIVVANAADAQRLLTEIPWFAQEGEPALRCHLLPDWETLPYDAF 60 Query: 89 SPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFLAAYTFFFKQGEKLDEGKL 148 SPHQDLVSERLATLYE+Q+GQCD+LIVPATTAL+RMAPP FLAAYTFFFKQGE LDE +L Sbjct: 61 SPHQDLVSERLATLYEMQNGQCDVLIVPATTALVRMAPPSFLAAYTFFFKQGEVLDEARL 120 Query: 149 KSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLDLFGDTIETIRTFDADTQR 208 K+QL+LAGYT V QVMSPGEYSVRGGLID+FPMGS LPYR+DLFGDTIETIRTFDADTQR Sbjct: 121 KTQLSLAGYTPVSQVMSPGEYSVRGGLIDLFPMGSALPYRIDLFGDTIETIRTFDADTQR 180 Query: 209 SLYPVPEVRLLPGREFPMDEVSRLAFRNRWREVFEGDPSRSAIYKDIGNGIASAGIEYYL 268 SLYPV EVRLLPGREFPMD+++R AFR RWREVFEGDPSRS++YKDIGNGIA+AGIEYYL Sbjct: 181 SLYPVREVRLLPGREFPMDDLARTAFRGRWREVFEGDPSRSSVYKDIGNGIAAAGIEYYL 240 Query: 269 PLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWNFLHADRERPVLEPQAIYL 328 PLFFE+T TLF YLP + FA GDI+ AI RFW+DTRSR NFL +DRERP+L P+ ++L Sbjct: 241 PLFFEDTRTLFDYLPGDTTFALSGDIDGAIGRFWNDTRSRHNFLKSDRERPILSPEKLFL 300 Query: 329 DDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRADDPLVNLRSFLLKGAERVLIC 388 DE+FFT K RW+L DD PS +SAPLPNIAVNRR+DDPL+NLRS+LL A+RV+IC Sbjct: 301 TDEEFFTRAKSFGRWILHADDQPSELSAPLPNIAVNRRSDDPLINLRSYLLYSAKRVMIC 360 Query: 389 AESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVAPLHAGFVTAAGLA---LV 445 AE+NGRRETLQQYF EY L CE + GF+ LMLGVAP+HAGF L + Sbjct: 361 AETNGRRETLQQYFNEYQLDLTPCEGYAGFVNGSAKLMLGVAPMHAGFELGEALGNVVFI 420 Query: 446 TETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSSHGIGRYMGLVSMDLGE 505 TETELYAGSGRRVG +KQ+AAT VE MVRDLSELKIGDPVVHS+HGIGRYMGLVSMDLGE Sbjct: 421 TETELYAGSGRRVGHKKQEAATQVESMVRDLSELKIGDPVVHSNHGIGRYMGLVSMDLGE 480 Query: 506 GETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGSGQWEKAKRKAAQQVRD 565 GETEFL+L+YAKE KLYVPVSQLHVISRYSGASPEDAPLH+LGSGQWEKAKR+AAQQ+RD Sbjct: 481 GETEFLYLDYAKEAKLYVPVSQLHVISRYSGASPEDAPLHSLGSGQWEKAKRRAAQQIRD 540 Query: 566 TAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAAAINAVIKDMTGGKPMD 625 TAAELLNLYARRALR+GHAF++SAHDY FADSFGFEET DQAAAINAVI DMT GKPMD Sbjct: 541 TAAELLNLYARRALRKGHAFEFSAHDYANFADSFGFEETVDQAAAINAVIGDMTSGKPMD 600 Query: 626 RLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAATFADRFANWPVKIAEL 685 RLICGDVGFGKTEVALRA FVAV+GGKQVAILAPTTLLAEQHA TFADRFA+WPVKIAEL Sbjct: 601 RLICGDVGFGKTEVALRATFVAVLGGKQVAILAPTTLLAEQHAQTFADRFADWPVKIAEL 660 Query: 686 SRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVIIDEEHRFGVRQKEALK 745 SRFR+GKE+ A+KG+ DGT+DIVIGTHKLLSD+VKF RLGLVIIDEEHRFGVRQKEALK Sbjct: 661 SRFRSGKEINTAMKGMADGTLDIVIGTHKLLSDDVKFERLGLVIIDEEHRFGVRQKEALK 720 Query: 746 SLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRAEQESTIREACL 805 +LRAEVDVLTLTATPIPRTLGMALEGLRDFS+IATAPQKRLAIKTFVR+E ES IREACL Sbjct: 721 ALRAEVDVLTLTATPIPRTLGMALEGLRDFSIIATAPQKRLAIKTFVRSEGESVIREACL 780 Query: 806 RELKRGGQVYFLHNEVETIANRKAELEQLLPEARIGVAHGQMHERDLEKVMRDFVAQRFN 865 RELKRGGQVYFLHNEV+TI NRK LE LLPEARIGVAHGQMHER+LEKVMRDFVAQRFN Sbjct: 781 RELKRGGQVYFLHNEVDTIENRKQMLEALLPEARIGVAHGQMHERELEKVMRDFVAQRFN 840 Query: 866 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVQDVQGLS 925 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLV DV GL+ Sbjct: 841 ILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDVAGLT 900 Query: 926 KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEIHEIGFQMYSDMLNEAV 985 K AQRRL+AIQQMEELGSGFYLAMHDLEIRGAGEVLGD+QSGE+ EIGFQMYSDMLN AV Sbjct: 901 KLAQRRLDAIQQMEELGSGFYLAMHDLEIRGAGEVLGDNQSGEMTEIGFQMYSDMLNLAV 960 Query: 986 RALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLYKRLANCEKSDAIDALQ 1045 R+L++G+EPDLAAPL++TTEINLH PALLP ++CGDVHERLSLYKRLA+C +D ID LQ Sbjct: 961 RSLRNGKEPDLAAPLASTTEINLHVPALLPAEYCGDVHERLSLYKRLASCNDADKIDDLQ 1020 Query: 1046 EELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALLQFVPNPPIDAMRIIEL 1105 EE+IDRFGKLP+ AKAL+ETHRLR+ AKP+GIIKIDAH EAA L F PNPPIDAMRII L Sbjct: 1021 EEMIDRFGKLPEPAKALVETHRLRVLAKPIGIIKIDAHGEAAQLVFEPNPPIDAMRIISL 1080 Query: 1106 VQKNRQVKLNGPDKLRITASMPDLNARVQQVKATMKALTG 1145 +QKNR +KLNG DKLRITASMPDL ARV Q+K T++AL G Sbjct: 1081 IQKNRHIKLNGQDKLRITASMPDLAARVLQIKTTIRALVG 1120 >C3X222.1 C3X222_OXAFO Transcription-repair coupling factor Length = 1150 Score = 1809 bits (4685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 856/1147 (74%), Positives = 994/1147 (86%), Gaps = 3/1147 (0%) Query: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 M FD KK LP+ G RF P +HGSADA +LA+AA LK+ +ML VVA A+DA+RLL E Sbjct: 1 MPFDLKKFLPRPGQRFAMPPLHGSADALVLAKAAHELKSRQQMLVAVVANASDARRLLEE 60 Query: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 IPWF E LRCHLLPDWETLPYD+FSPHQDLVS+RLATLYEV +G+CD+L+VPA+TA Sbjct: 61 IPWFDSEGDEPLRCHLLPDWETLPYDSFSPHQDLVSQRLATLYEVHNGRCDVLLVPASTA 120 Query: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 LLR+APP FLAA+TFFFK+GE LDE KLK+QLT+AGY HV QVMSPGEYSVRGGLID+FP Sbjct: 121 LLRIAPPSFLAAHTFFFKKGETLDEAKLKTQLTIAGYNHVSQVMSPGEYSVRGGLIDLFP 180 Query: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWRE 240 MGS LPYRLDLFGDTIETIRTFDADTQRSLYPV E+R+LPGREFPMDE SR FR+RWRE Sbjct: 181 MGSKLPYRLDLFGDTIETIRTFDADTQRSLYPVNEIRMLPGREFPMDEPSRAYFRSRWRE 240 Query: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 VFEGDP+ S IY+DI +GIASAGIEYYLPLFFEETATLFQYLP NA+FA +G++ +A +R Sbjct: 241 VFEGDPTLSVIYRDIASGIASAGIEYYLPLFFEETATLFQYLPENAIFALIGNVSEAFQR 300 Query: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 FW+DTRSR+ FL +DRERP+L P+ ++L EDFF L +P RWV+ +DDAPS +SAP+P+ Sbjct: 301 FWADTRSRYAFLKSDRERPLLPPEKLFLSSEDFFVLAQPFGRWVITSDDAPSELSAPIPD 360 Query: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 + +NRRADDPL NLR+++ + +RVLICAES GRRET+QQ F EYD C + F+ Sbjct: 361 VTINRRADDPLSNLRTYIERAGKRVLICAESPGRRETMQQLFNEYDFKVAPCTGFADFIT 420 Query: 421 SDEPLMLGVAPLHAGFVTA---AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLS 477 E +M VAPL GF LA +TETELYA SGRR ++ A +E +VRDLS Sbjct: 421 HSEDVMFCVAPLQKGFALGYVFGDLAFITETELYANSGRRSVRKQTNADFHIESIVRDLS 480 Query: 478 ELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGA 537 ELKIGDPVVH+ HGIGRY GLV++DLGEGETEFLHL+YA+ETKLYVPVSQLHVISRY+G Sbjct: 481 ELKIGDPVVHAHHGIGRYRGLVTVDLGEGETEFLHLQYARETKLYVPVSQLHVISRYAGT 540 Query: 538 SPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFAD 597 SPEDAPLH LGSGQWEKA++KAAQ++ DTAAELL+LYARR++R+G F + +DYEAFAD Sbjct: 541 SPEDAPLHTLGSGQWEKARQKAAQKIHDTAAELLDLYARRSMRKGFPFPLTKNDYEAFAD 600 Query: 598 SFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAIL 657 SFGFEET DQAAAI+AV++DMT KPMDRLICGDVGFGKTEVALRAAF+AVMGGKQVA+L Sbjct: 601 SFGFEETPDQAAAISAVMEDMTSEKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALL 660 Query: 658 APTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLS 717 APTTLLAEQHA TF DRFA+WPV+I+ELSRFRT K+V Q I+GL DG++DIVIGTHKLLS Sbjct: 661 APTTLLAEQHAQTFRDRFADWPVRISELSRFRTQKQVNQTIQGLEDGSVDIVIGTHKLLS 720 Query: 718 DEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSV 777 +V F RLGLVIIDEEHRFGVRQKEALK++RAEVDVLTLTATPIPRTLGMAL+GLR FS+ Sbjct: 721 KDVSFKRLGLVIIDEEHRFGVRQKEALKAIRAEVDVLTLTATPIPRTLGMALDGLRSFSI 780 Query: 778 IATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPE 837 IATAPQKRLAIKTFVR+E +S IREACLRELKRGGQVYFLHNEVETI NR+ LE LLPE Sbjct: 781 IATAPQKRLAIKTFVRSENDSVIREACLRELKRGGQVYFLHNEVETIENRRVMLENLLPE 840 Query: 838 ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 897 ARIGVAHGQMHERDLEKVMRDFVA R+NILLCTTIIETGIDVP ANT++MHRADKFGLAQ Sbjct: 841 ARIGVAHGQMHERDLEKVMRDFVAHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQ 900 Query: 898 LHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA 957 LHQLRGR+GRSHHQAYAYLLV D+Q LSKQAQRRLEAI+QMEELGSGF+LAMHDLEIRGA Sbjct: 901 LHQLRGRIGRSHHQAYAYLLVNDIQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGA 960 Query: 958 GEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPND 1017 GEVLG+ QSGE+ EIGFQMYSDML EAVRA+K G +PD AP +TTTEINLH PALLP D Sbjct: 961 GEVLGEEQSGEMVEIGFQMYSDMLKEAVRAMKKGEQPDYDAPFTTTTEINLHTPALLPGD 1020 Query: 1018 FCGDVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGI 1077 +C V+ERLSLYKR A+ E + ++ LQEELIDRFGKLP+AA+AL+ETHRLR+ AK +GI Sbjct: 1021 YCPGVNERLSLYKRFASAETQEEVNDLQEELIDRFGKLPEAAQALVETHRLRLLAKHVGI 1080 Query: 1078 IKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVK 1137 +KIDAH+EAA+LQF+PNPPIDA+RIIEL+QKN+ ++LNGP+KLR+TA MP+L+ARV Q+K Sbjct: 1081 VKIDAHTEAAVLQFLPNPPIDAIRIIELIQKNKNIRLNGPEKLRVTAKMPNLDARVAQIK 1140 Query: 1138 ATMKALT 1144 AT+++LT Sbjct: 1141 ATIRSLT 1147 >C3XA83.1 C3XA83_OXAFO Transcription-repair coupling factor Length = 1152 Score = 1798 bits (4658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 851/1148 (74%), Positives = 999/1148 (87%), Gaps = 3/1148 (0%) Query: 1 MSFDPKKSLPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAE 60 M FD KK LP+ G R+ PA+HGSADA +LA+AA LK+ +ML +VA A+DA+RLL E Sbjct: 1 MPFDLKKFLPRPGQRYAMPALHGSADALVLAKAAQDLKSRQQMLVAIVANASDARRLLEE 60 Query: 61 IPWFQPSEGERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTA 120 IPWF E LRCHLLPDWETLPYD+FSPHQDLVS+RLATLYEV +G+CD+L+VPA+TA Sbjct: 61 IPWFSDETEEPLRCHLLPDWETLPYDSFSPHQDLVSQRLATLYEVSNGRCDVLLVPASTA 120 Query: 121 LLRMAPPQFLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFP 180 LLR+APP FLAA+TF+FKQGE LDE KLKSQLT+AGY HV QVMSPGEYSVRGGLID+FP Sbjct: 121 LLRIAPPAFLAAHTFYFKQGETLDEEKLKSQLTIAGYNHVSQVMSPGEYSVRGGLIDLFP 180 Query: 181 MGSVLPYRLDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWRE 240 MGS LPYRLDLFGDTIETIRTFD D QRSLYPV E+R+LPG EFPMDE SR FR+RWRE Sbjct: 181 MGSKLPYRLDLFGDTIETIRTFDPDNQRSLYPVREIRMLPGHEFPMDENSRAFFRSRWRE 240 Query: 241 VFEGDPSRSAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKR 300 VFEGDP+ S IY+DI +GIASAGIEYYLPLFFEET TLF+YLP NA+FA +G++ +A +R Sbjct: 241 VFEGDPTLSVIYRDIASGIASAGIEYYLPLFFEETTTLFRYLPENAVFAMIGNVNEAFQR 300 Query: 301 FWSDTRSRWNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPN 360 FW+DT+SR+NFL +DRERP+L P+ ++L EDFF L +P ARWV++TDDAPS +SAP+P+ Sbjct: 301 FWADTQSRYNFLKSDRERPLLAPEKLFLTSEDFFVLAQPFARWVIQTDDAPSELSAPIPD 360 Query: 361 IAVNRRADDPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLA 420 ++VNRRADDPL NLR+++ + +RV+ICAES GRRET+QQ+F EYD C + F Sbjct: 361 VSVNRRADDPLANLRAYIKRADKRVMICAESPGRRETMQQFFNEYDFKVTPCTGFADFAT 420 Query: 421 SDEPLMLGVAPLHAGFVTA---AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLS 477 S E +M G++P+ GF LA +TETELYA SGRR G ++ +A +E +VRDLS Sbjct: 421 SKEQVMFGISPVQKGFALGYVFGDLAFITETELYANSGRRAGRKRTEAVAHIESIVRDLS 480 Query: 478 ELKIGDPVVHSSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGA 537 ELKIGDPVVH++HGIGRY GLV++DLGEGETEFLHL+YAK+TKLYVPVSQLHVISRY+G Sbjct: 481 ELKIGDPVVHANHGIGRYRGLVTVDLGEGETEFLHLQYAKDTKLYVPVSQLHVISRYAGT 540 Query: 538 SPEDAPLHALGSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFAD 597 S +DAPLH LGSGQWEKAK+KAAQQ+ DTAAELL+LYARR++R+G F + +DYEAFAD Sbjct: 541 SADDAPLHTLGSGQWEKAKQKAAQQIHDTAAELLDLYARRSMRKGFPFPLTKNDYEAFAD 600 Query: 598 SFGFEETADQAAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAIL 657 SFGFEET DQAAAI +V++DMT KPMDRLICGDVGFGKTEVALRAAF+AVMGGKQVA+L Sbjct: 601 SFGFEETPDQAAAIASVMEDMTSDKPMDRLICGDVGFGKTEVALRAAFIAVMGGKQVALL 660 Query: 658 APTTLLAEQHAATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLS 717 APTTLLAEQHA TF DRFA+WPV+I+ELSRFRT K+V Q IKG+ DGT+DIVIGTHKLLS Sbjct: 661 APTTLLAEQHAQTFRDRFADWPVRISELSRFRTQKQVNQTIKGMEDGTVDIVIGTHKLLS 720 Query: 718 DEVKFSRLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSV 777 +V F+RLGL+IIDEEHRFGVRQKEALK++RAEVDVLTLTATPIPRTLGMAL+GLR FS+ Sbjct: 721 KDVSFNRLGLIIIDEEHRFGVRQKEALKAIRAEVDVLTLTATPIPRTLGMALDGLRSFSI 780 Query: 778 IATAPQKRLAIKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPE 837 IATAPQKRLAIKTFVR+E +S IREAC+RELKRGGQVYFLHNEVETI NR+ LE LLPE Sbjct: 781 IATAPQKRLAIKTFVRSENDSVIREACMRELKRGGQVYFLHNEVETIENRRIMLENLLPE 840 Query: 838 ARIGVAHGQMHERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQ 897 ARIGVAHGQMHER+LEKVMRDFV+ R+NILLCTTIIETGIDVP ANT++MHRADKFGLAQ Sbjct: 841 ARIGVAHGQMHERELEKVMRDFVSHRYNILLCTTIIETGIDVPNANTMVMHRADKFGLAQ 900 Query: 898 LHQLRGRVGRSHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGA 957 LHQLRGR+GRSHHQAYAYLLV D Q LSKQAQRRLEAI+QMEELGSGF+LAMHDLEIRGA Sbjct: 901 LHQLRGRIGRSHHQAYAYLLVNDTQTLSKQAQRRLEAIRQMEELGSGFFLAMHDLEIRGA 960 Query: 958 GEVLGDHQSGEIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPND 1017 GEVLG+ QSGE+ EIGFQMYSDML EAVRA+K G EPD AP +TTTEINLH PALLP D Sbjct: 961 GEVLGEEQSGEMVEIGFQMYSDMLKEAVRAMKKGEEPDYDAPFTTTTEINLHTPALLPGD 1020 Query: 1018 FCGDVHERLSLYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGI 1077 +C V+ERLSLYKR ANCE + ++ LQEELIDRFGKLP+AA+AL+ETHRLRI AK +GI Sbjct: 1021 YCPGVNERLSLYKRFANCETQEQVNDLQEELIDRFGKLPEAAQALVETHRLRIQAKTVGI 1080 Query: 1078 IKIDAHSEAALLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVK 1137 IKIDAH+EAA++QFVPNPPIDA+RIIE++QKN+ ++LNGP+KL++TA MP+L+ARV Q+K Sbjct: 1081 IKIDAHTEAAVMQFVPNPPIDAIRIIEIIQKNKHIRLNGPEKLKVTAKMPNLDARVAQIK 1140 Query: 1138 ATMKALTG 1145 +T+++LT Sbjct: 1141 STIRSLTA 1148 >D8NIS0.1 D8NIS0_RALSO Transcription-repair ATP-dependent coupling factor, helicase EC=3.6.1.- Length = 1147 Score = 1711 bits (4430), Expect = 0.0, Method: Compositional matrix adjust. Identities = 837/1136 (73%), Positives = 950/1136 (83%), Gaps = 5/1136 (0%) Query: 9 LPKAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSE 68 L K G RF + GSADA LLA+ +A MLAVV A A DAQRL E+ WF P Sbjct: 15 LVKPGQRFVFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAP-- 72 Query: 69 GERLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQ 128 + R LLPDWETLPYD FSPHQDL+SERLATL+++Q G CDLL+VPA+TAL R+APP Sbjct: 73 --QARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPASTALQRIAPPS 130 Query: 129 FLAAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYR 188 FLAAYTFFFK+GE+LDE LK+Q TLAGY HV VM PGEYSVRGGLID+FPMGS +PYR Sbjct: 131 FLAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPMPYR 190 Query: 189 LDLFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWREVFEGDPSR 248 LDLFGD IETIR FD DTQRSLYPV EVRLLPGREFPMDE +R AFR RWREVFEGDP+R Sbjct: 191 LDLFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVFEGDPTR 250 Query: 249 SAIYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSR 308 + IYKDIGNG+ SAGIEYYLPLFFEETATLF YLPA A A VGDIE A++RFW+DT R Sbjct: 251 APIYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPATAHLALVGDIEAAVRRFWADTTQR 310 Query: 309 WNFLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRAD 368 +NF+ DR+RP+L P A+YLD+E FF KPHAR VL+ + + +S PLPN+AVNRRA+ Sbjct: 311 YNFMRHDRDRPLLAPPALYLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAE 370 Query: 369 DPLVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLG 428 DPLVNL +FL++G RV+ICAES GRRETL Q A LHP D + + +LG Sbjct: 371 DPLVNLEAFLMRGDCRVMICAESAGRRETLAQMLAASGLHPEGVADCADLMGGEARFVLG 430 Query: 429 VAPLHAGFVTA-AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVH 487 VAPL+ GF+ +A +TETELYA + RR G RKQ+ AT V+ MVRDL+ELKIGDPVVH Sbjct: 431 VAPLYQGFILGDERIAFITETELYAQAVRRSGRRKQEQATAVDAMVRDLAELKIGDPVVH 490 Query: 488 SSHGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHAL 547 S HGIGRY GLVS+D+G GE EFLHL+Y K +KLYVPV QLHVISRYSGA P+ APLH L Sbjct: 491 SEHGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDTAPLHQL 550 Query: 548 GSGQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQ 607 GSGQWEKAKR+AAQQ+RDTAAELLNLYARRALRQG AF + +DYEAFA+SFGF+ET DQ Sbjct: 551 GSGQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQ 610 Query: 608 AAAINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQH 667 AAAI AVI DMT GKPMDRL+CGDVGFGKTEVALRAAFVAVMGGKQVA+LAPTTLLAEQH Sbjct: 611 AAAITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQH 670 Query: 668 AATFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGL 727 T ADRFA+WPV+IAE+SRF+ KE+ AI+ + GTIDIVIGTHKLLS +V+F RLGL Sbjct: 671 YQTLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGL 730 Query: 728 VIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLA 787 VIIDEEHRFGVRQKEALK+LRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLA Sbjct: 731 VIIDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLA 790 Query: 788 IKTFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPEARIGVAHGQM 847 IKTFVR E++S +REA LRELKRGGQVYFLHNEVETI N++A+LE L+PEAR+ VAHGQM Sbjct: 791 IKTFVRREEDSVLREAILRELKRGGQVYFLHNEVETIENKRAKLEALVPEARVAVAHGQM 850 Query: 848 HERDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGR 907 HER+LE+VMRDFVAQR NILLCTTIIETGIDVPTANTI++HRADKFGLAQLHQLRGRVGR Sbjct: 851 HERELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGR 910 Query: 908 SHHQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSG 967 SHHQAYAYLLV D +GL+KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGD QSG Sbjct: 911 SHHQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSG 970 Query: 968 EIHEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLS 1027 EI EIGFQ+Y+DMLN+AV++LK G+EPDL APL+ TTEINL PALLP+D+CGDV ERLS Sbjct: 971 EISEIGFQLYTDMLNQAVKSLKAGKEPDLMAPLAATTEINLGTPALLPSDYCGDVQERLS 1030 Query: 1028 LYKRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAA 1087 LYKRLANCE + ID +QEELIDRFGKLP A++LIETHRLRIAA PLGI KID ++A Sbjct: 1031 LYKRLANCESGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAVPLGIRKIDTGADAV 1090 Query: 1088 LLQFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATMKAL 1143 LQFVPNPP+DA++II+LVQKNRQ+KL G D+LRI + A Q ++ TM+ L Sbjct: 1091 TLQFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPTETAALAQAIRHTMRQL 1146 >B5SKB5.1 B5SKB5_RALSO Transcription-repair coupling factor protein Length = 1147 Score = 1711 bits (4430), Expect = 0.0, Method: Compositional matrix adjust. Identities = 836/1134 (73%), Positives = 950/1134 (83%), Gaps = 5/1134 (0%) Query: 11 KAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSEGE 70 K G RF + GSADA LLA+ +A MLAVV A A DAQRL E+ WF P Sbjct: 17 KPGQRFVFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAP---- 72 Query: 71 RLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFL 130 + R LLPDWETLPYD FSPHQDL+SERLATL+++Q G CDLL+VPA+TAL R+APP FL Sbjct: 73 QARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPASTALQRIAPPSFL 132 Query: 131 AAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLD 190 AAYTFFFK+GE+LDE LK+Q TLAGY HV VM PGEYSVRGGLID+FPMGS +PYRLD Sbjct: 133 AAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPMPYRLD 192 Query: 191 LFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWREVFEGDPSRSA 250 LFGD IETIR FD DTQRSLYPV EVRLLPGREFPMDEV+R AFR RWREVFEGDP+R+ Sbjct: 193 LFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEVARTAFRGRWREVFEGDPTRAP 252 Query: 251 IYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWN 310 IYKDIGNG+ SAGIEYYLPLFFEETATLF YLPA A A VGDIE A++RFW+DT R+N Sbjct: 253 IYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPATAHLALVGDIEAAVRRFWADTTQRYN 312 Query: 311 FLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRADDP 370 F+ DR+RP+L P A+YLD+E FF KPHAR VL+ + + +S PLPN+AVNRRA+DP Sbjct: 313 FMRHDRDRPLLAPPALYLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAEDP 372 Query: 371 LVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVA 430 LVNL +FL++G RV+ICAES GRRETL Q A LHP D + + +LGVA Sbjct: 373 LVNLEAFLMRGNCRVMICAESAGRRETLAQMLAASGLHPEGVADCADLMGGEARFVLGVA 432 Query: 431 PLHAGFVTA-AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSS 489 PL+ GF+ +A +TETELYA + RR G RKQ+ AT V+ MVRDL+ELKIGDPVVHS Sbjct: 433 PLYQGFILGDERIAFITETELYAQAVRRSGRRKQEQATAVDAMVRDLAELKIGDPVVHSE 492 Query: 490 HGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGS 549 HGIGRY GLVS+D+G GE EFLHL+Y K +KLYVPV QLHVISRYSGA P+ APLH LGS Sbjct: 493 HGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDTAPLHQLGS 552 Query: 550 GQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAA 609 GQWEKAKR+AAQQ+RDTAAELLNLYARRALRQG AF + +DYEAFA+SFGF+ET DQAA Sbjct: 553 GQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAA 612 Query: 610 AINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAA 669 AI AVI DMT GKPMDRL+CGDVGFGKTEVALRAAFVAVMGGKQVA+LAPTTLLAEQH Sbjct: 613 AITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQ 672 Query: 670 TFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVI 729 T ADRFA+WPV+IAE+SRF+ KE+ AI+ + GTIDIVIGTHKLLS +V+F RLGLVI Sbjct: 673 TLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVI 732 Query: 730 IDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK 789 IDEEHRFGVRQKEALK+LRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK Sbjct: 733 IDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK 792 Query: 790 TFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPEARIGVAHGQMHE 849 TFVR E++S +REA LRELKRGGQVYFLHNEVETI N++A+LE+L+PEAR+ VAHGQMHE Sbjct: 793 TFVRREEDSVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELVPEARVAVAHGQMHE 852 Query: 850 RDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSH 909 R+LE+VMRDFVAQR NILLCTTIIETGIDVPTANTI++HRADKFGLAQLHQLRGRVGRSH Sbjct: 853 RELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSH 912 Query: 910 HQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEI 969 HQAYAYLLV D +GL+KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGD QSGEI Sbjct: 913 HQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEI 972 Query: 970 HEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLY 1029 EIGFQ+Y+DMLN AV++LK G+EPDL APL+ TTEINL PALLPND+CGDV ERLSLY Sbjct: 973 SEIGFQLYTDMLNHAVKSLKAGKEPDLMAPLAATTEINLGTPALLPNDYCGDVQERLSLY 1032 Query: 1030 KRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALL 1089 KRLANC+ + ID +QEELIDRFGKLP A++LIETHRLRIAA PLGI KID ++A L Sbjct: 1033 KRLANCDSGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAVPLGIRKIDTGADAVTL 1092 Query: 1090 QFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATMKAL 1143 QFVPNPP+DA++II+LVQKNRQ+KL G D+LRI + A Q ++ T++ L Sbjct: 1093 QFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPTETAALAQAIRHTLRQL 1146 >A3RPK0.1 A3RPK0_RALSO Transcription-repair coupling factor Length = 1206 Score = 1711 bits (4430), Expect = 0.0, Method: Compositional matrix adjust. Identities = 836/1134 (73%), Positives = 950/1134 (83%), Gaps = 5/1134 (0%) Query: 11 KAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSEGE 70 K G RF + GSADA LLA+ +A MLAVV A A DAQRL E+ WF P Sbjct: 76 KPGQRFVFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAP---- 131 Query: 71 RLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFL 130 + R LLPDWETLPYD FSPHQDL+SERLATL+++Q G CDLL+VPA+TAL R+APP FL Sbjct: 132 QARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPASTALQRIAPPSFL 191 Query: 131 AAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLD 190 AAYTFFFK+GE+LDE LK+Q TLAGY HV VM PGEYSVRGGLID+FPMGS +PYRLD Sbjct: 192 AAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPMPYRLD 251 Query: 191 LFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWREVFEGDPSRSA 250 LFGD IETIR FD DTQRSLYPV EVRLLPGREFPMDEV+R AFR RWREVFEGDP+R+ Sbjct: 252 LFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEVARTAFRGRWREVFEGDPTRAP 311 Query: 251 IYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWN 310 IYKDIGNG+ SAGIEYYLPLFFEETATLF YLPA A A VGDIE A++RFW+DT R+N Sbjct: 312 IYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPATAHLALVGDIEAAVRRFWADTTQRYN 371 Query: 311 FLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRADDP 370 F+ DR+RP+L P A+YLD+E FF KPHAR VL+ + + +S PLPN+AVNRRA+DP Sbjct: 372 FMRHDRDRPLLAPPALYLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAEDP 431 Query: 371 LVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVA 430 LVNL +FL++G RV+ICAES GRRETL Q A LHP D + + +LGVA Sbjct: 432 LVNLEAFLMRGNCRVMICAESAGRRETLAQMLAASGLHPEGVADCADLMGGEARFVLGVA 491 Query: 431 PLHAGFVTA-AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSS 489 PL+ GF+ +A +TETELYA + RR G RKQ+ AT V+ MVRDL+ELKIGDPVVHS Sbjct: 492 PLYQGFILGDERIAFITETELYAQAVRRSGRRKQEQATAVDAMVRDLAELKIGDPVVHSE 551 Query: 490 HGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGS 549 HGIGRY GLVS+D+G GE EFLHL+Y K +KLYVPV QLHVISRYSGA P+ APLH LGS Sbjct: 552 HGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDTAPLHQLGS 611 Query: 550 GQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAA 609 GQWEKAKR+AAQQ+RDTAAELLNLYARRALRQG AF + +DYEAFA+SFGF+ET DQAA Sbjct: 612 GQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAA 671 Query: 610 AINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAA 669 AI AVI DMT GKPMDRL+CGDVGFGKTEVALRAAFVAVMGGKQVA+LAPTTLLAEQH Sbjct: 672 AITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQ 731 Query: 670 TFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVI 729 T ADRFA+WPV+IAE+SRF+ KE+ AI+ + GTIDIVIGTHKLLS +V+F RLGLVI Sbjct: 732 TLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVI 791 Query: 730 IDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK 789 IDEEHRFGVRQKEALK+LRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK Sbjct: 792 IDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK 851 Query: 790 TFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPEARIGVAHGQMHE 849 TFVR E++S +REA LRELKRGGQVYFLHNEVETI N++A+LE+L+PEAR+ VAHGQMHE Sbjct: 852 TFVRREEDSVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELVPEARVAVAHGQMHE 911 Query: 850 RDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSH 909 R+LE+VMRDFVAQR NILLCTTIIETGIDVPTANTI++HRADKFGLAQLHQLRGRVGRSH Sbjct: 912 RELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSH 971 Query: 910 HQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEI 969 HQAYAYLLV D +GL+KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGD QSGEI Sbjct: 972 HQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEI 1031 Query: 970 HEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLY 1029 EIGFQ+Y+DMLN AV++LK G+EPDL APL+ TTEINL PALLPND+CGDV ERLSLY Sbjct: 1032 SEIGFQLYTDMLNHAVKSLKAGKEPDLMAPLAATTEINLGTPALLPNDYCGDVQERLSLY 1091 Query: 1030 KRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALL 1089 KRLANC+ + ID +QEELIDRFGKLP A++LIETHRLRIAA PLGI KID ++A L Sbjct: 1092 KRLANCDSGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAVPLGIRKIDTGADAVTL 1151 Query: 1090 QFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATMKAL 1143 QFVPNPP+DA++II+LVQKNRQ+KL G D+LRI + A Q ++ T++ L Sbjct: 1152 QFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPTETAALAQAIRHTLRQL 1205 >B5S385.1 B5S385_RALSO Transcription-repair coupling factor protein Length = 1147 Score = 1709 bits (4425), Expect = 0.0, Method: Compositional matrix adjust. Identities = 836/1134 (73%), Positives = 949/1134 (83%), Gaps = 5/1134 (0%) Query: 11 KAGIRFQPPAVHGSADAYLLAQAALALKAEGRMLAVVVAGATDAQRLLAEIPWFQPSEGE 70 K G RF + GSADA LLA+ +A MLAVV A A DAQRL E+ WF P Sbjct: 17 KPGQRFVFSGLQGSADALLLARYLEQHRATAPMLAVVCANAVDAQRLADELRWFAP---- 72 Query: 71 RLRCHLLPDWETLPYDAFSPHQDLVSERLATLYEVQSGQCDLLIVPATTALLRMAPPQFL 130 + R LLPDWETLPYD FSPHQDL+SERLATL+++Q G CDLL+VPA TAL R+APP FL Sbjct: 73 QARVKLLPDWETLPYDNFSPHQDLISERLATLHDLQGGACDLLLVPAPTALQRIAPPSFL 132 Query: 131 AAYTFFFKQGEKLDEGKLKSQLTLAGYTHVGQVMSPGEYSVRGGLIDIFPMGSVLPYRLD 190 AAYTFFFK+GE+LDE LK+Q TLAGY HV VM PGEYSVRGGLID+FPMGS +PYRLD Sbjct: 133 AAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPMPYRLD 192 Query: 191 LFGDTIETIRTFDADTQRSLYPVPEVRLLPGREFPMDEVSRLAFRNRWREVFEGDPSRSA 250 LFGD IETIR FD DTQRSLYPV EVRLLPGREFPMDEV+R AFR RWREVFEGDP+R+ Sbjct: 193 LFGDEIETIRAFDPDTQRSLYPVNEVRLLPGREFPMDEVARTAFRGRWREVFEGDPTRAP 252 Query: 251 IYKDIGNGIASAGIEYYLPLFFEETATLFQYLPANAMFATVGDIEQAIKRFWSDTRSRWN 310 IYKDIGNG+ SAGIEYYLPLFFEETATLF YLPA A A VGDIE A++RFW+DT R+N Sbjct: 253 IYKDIGNGVPSAGIEYYLPLFFEETATLFDYLPATAHLALVGDIEAAVRRFWADTTQRYN 312 Query: 311 FLHADRERPVLEPQAIYLDDEDFFTLLKPHARWVLKTDDAPSAISAPLPNIAVNRRADDP 370 F+ DR+RP+L P A+YLD+E FF KPHAR VL+ + + +S PLPN+AVNRRA+DP Sbjct: 313 FMRHDRDRPLLAPPALYLDEEAFFVAAKPHARLVLRAEAGDAPLSLPLPNVAVNRRAEDP 372 Query: 371 LVNLRSFLLKGAERVLICAESNGRRETLQQYFAEYDLHPVLCEDWNGFLASDEPLMLGVA 430 LVNL +FL++G RV+ICAES GRRETL Q A LHP D + + +LGVA Sbjct: 373 LVNLEAFLMRGNCRVMICAESAGRRETLAQMLAASGLHPEGVADCADLMGGEARFVLGVA 432 Query: 431 PLHAGFVTA-AGLALVTETELYAGSGRRVGSRKQQAATDVEYMVRDLSELKIGDPVVHSS 489 PL+ GF+ +A +TETELYA + RR G RKQ+ AT V+ MVRDL+ELKIGDPVVHS Sbjct: 433 PLYQGFILGDERIAFITETELYAQAVRRSGRRKQEQATAVDAMVRDLAELKIGDPVVHSE 492 Query: 490 HGIGRYMGLVSMDLGEGETEFLHLEYAKETKLYVPVSQLHVISRYSGASPEDAPLHALGS 549 HGIGRY GLVS+D+G GE EFLHL+Y K +KLYVPV QLHVISRYSGA P+ APLH LGS Sbjct: 493 HGIGRYQGLVSIDMGNGEEEFLHLDYDKGSKLYVPVHQLHVISRYSGADPDTAPLHQLGS 552 Query: 550 GQWEKAKRKAAQQVRDTAAELLNLYARRALRQGHAFQYSAHDYEAFADSFGFEETADQAA 609 GQWEKAKR+AAQQ+RDTAAELLNLYARRALRQG AF + +DYEAFA+SFGF+ET DQAA Sbjct: 553 GQWEKAKRRAAQQIRDTAAELLNLYARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAA 612 Query: 610 AINAVIKDMTGGKPMDRLICGDVGFGKTEVALRAAFVAVMGGKQVAILAPTTLLAEQHAA 669 AI AVI DMT GKPMDRL+CGDVGFGKTEVALRAAFVAVMGGKQVA+LAPTTLLAEQH Sbjct: 613 AITAVIADMTSGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQ 672 Query: 670 TFADRFANWPVKIAELSRFRTGKEVTQAIKGLGDGTIDIVIGTHKLLSDEVKFSRLGLVI 729 T ADRFA+WPV+IAE+SRF+ KE+ AI+ + GTIDIVIGTHKLLS +V+F RLGLVI Sbjct: 673 TLADRFADWPVRIAEISRFKNKKEIDAAIEAINAGTIDIVIGTHKLLSPDVQFDRLGLVI 732 Query: 730 IDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK 789 IDEEHRFGVRQKEALK+LRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK Sbjct: 733 IDEEHRFGVRQKEALKTLRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIK 792 Query: 790 TFVRAEQESTIREACLRELKRGGQVYFLHNEVETIANRKAELEQLLPEARIGVAHGQMHE 849 TFVR E++S +REA LRELKRGGQVYFLHNEVETI N++A+LE+L+PEAR+ VAHGQMHE Sbjct: 793 TFVRREEDSVLREAILRELKRGGQVYFLHNEVETIENKRAKLEELVPEARVAVAHGQMHE 852 Query: 850 RDLEKVMRDFVAQRFNILLCTTIIETGIDVPTANTIIMHRADKFGLAQLHQLRGRVGRSH 909 R+LE+VMRDFVAQR NILLCTTIIETGIDVPTANTI++HRADKFGLAQLHQLRGRVGRSH Sbjct: 853 RELERVMRDFVAQRANILLCTTIIETGIDVPTANTILIHRADKFGLAQLHQLRGRVGRSH 912 Query: 910 HQAYAYLLVQDVQGLSKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDHQSGEI 969 HQAYAYLLV D +GL+KQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGD QSGEI Sbjct: 913 HQAYAYLLVHDAEGLTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEI 972 Query: 970 HEIGFQMYSDMLNEAVRALKDGREPDLAAPLSTTTEINLHAPALLPNDFCGDVHERLSLY 1029 EIGFQ+Y+DMLN AV++LK G+EPDL APL+ TTEINL PALLPND+CGDV ERLSLY Sbjct: 973 SEIGFQLYTDMLNHAVKSLKAGKEPDLMAPLAATTEINLGTPALLPNDYCGDVQERLSLY 1032 Query: 1030 KRLANCEKSDAIDALQEELIDRFGKLPDAAKALIETHRLRIAAKPLGIIKIDAHSEAALL 1089 KRLANC+ + ID +QEELIDRFGKLP A++LIETHRLRIAA PLGI KID ++A L Sbjct: 1033 KRLANCDSGETIDNIQEELIDRFGKLPPQAQSLIETHRLRIAAVPLGIRKIDTGADAVTL 1092 Query: 1090 QFVPNPPIDAMRIIELVQKNRQVKLNGPDKLRITASMPDLNARVQQVKATMKAL 1143 QFVPNPP+DA++II+LVQKNRQ+KL G D+LRI + A Q ++ T++ L Sbjct: 1093 QFVPNPPVDAIKIIDLVQKNRQIKLAGQDRLRIENIPTETAALAQAIRHTLRQL 1146