BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0209.p (541 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0F4.1 D8J0F4_HERSS Methyl-accepting chemotaxis protein 1097 0.0 A6STX9.1 A6STX9_JANMA Methyl-accepting chemotaxis protein 719 0.0 B2T7T5.1 B2T7T5_BURPP Methyl-accepting chemotaxis sensory transd... 613 e-173 D4XEF5.1 D4XEF5_9BURK Methyl-accepting chemotaxis protein WspA 612 e-173 D5NB52.1 D5NB52_9BURK Methyl-accepting chemotaxis sensory transd... 606 e-171 E5U3D0.1 E5U3D0_ALCXX Methyl-accepting chemotaxis transducer 605 e-171 Q46V23.1 Q46V23_CUPPJ Histidine kinase, HAMP region:Bacterial ch... 585 e-165 E3HMC0.1 E3HMC0_ACHXA HAMP domain protein 13 583 e-164 A6V178.1 A6V178_PSEA7 Probable chemotaxis transducer 581 e-163 Q3KHG1.1 Q3KHG1_PSEPF Putative methyl-accepting chemotaxis protein 580 e-163 >D8J0F4.1 D8J0F4_HERSS Methyl-accepting chemotaxis protein Length = 541 Score = 1097 bits (2836), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/541 (100%), Positives = 541/541 (100%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW Sbjct: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET Sbjct: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 Query: 121 RQKYRAMISEVLKMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRIN 180 RQKYRAMISEVLKMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRIN Sbjct: 121 RQKYRAMISEVLKMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRIN 180 Query: 181 DAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRN 240 DAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRN Sbjct: 181 DAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRN 240 Query: 241 DEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 DEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG Sbjct: 241 DEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 Query: 301 ATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKLA 360 ATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKLA Sbjct: 301 ATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKLA 360 Query: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAV 420 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAV Sbjct: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAV 420 Query: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI Sbjct: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 Query: 481 VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKVQ 540 VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKVQ Sbjct: 481 VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKVQ 540 Query: 541 D 541 D Sbjct: 541 D 541 >A6STX9.1 A6STX9_JANMA Methyl-accepting chemotaxis protein Length = 542 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/540 (72%), Positives = 465/540 (86%), Gaps = 1/540 (0%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKNWTIKQRILGSFALILLLMALMA ++ V L +I++ A++L+ DSTPGL+ S MINA W Sbjct: 1 MKNWTIKQRILGSFALILLLMALMAAVAWVRLAKIDDAASSLQDDSTPGLHASAMINAYW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 +EN ++ QQIA+I ++A R+ DLA L+ N E ++ LQ Y+ +IF+ D+ F++FK+ Sbjct: 61 FENYMLIQQIAEIADSDANRKNDLAKLQVNNEHINALQVQYENSIFAADDKAQFEEFKQA 120 Query: 121 RQKYRAMISEVLKMDFSQRAP-IDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRI 179 R KY+ + E+L+ D S+ +P + K+F EQ+RP W+ + L Q++ + NK IAD +A I Sbjct: 121 RAKYQQIQQEILRQDLSRTSPLVHKLFIEQLRPAWKDAHALIQKITENNKVIADQSAQHI 180 Query: 180 NDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDR 239 D+V A+ M+++L+ ALLAA++ G+FL+RAI P+Q+L+GILD MRSGDFS+R+ L+R Sbjct: 181 IDSVHQAKINMVAALVVALLAAIISGYFLLRAITIPMQRLIGILDVMRSGDFSQRLHLER 240 Query: 240 NDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 DEF HL SGF+RMTDELT LV QAQKSS +V++SVTEIAAT++QQQATAAETAATTTEI Sbjct: 241 KDEFEHLASGFNRMTDELTILVGQAQKSSGQVSSSVTEIAATSKQQQATAAETAATTTEI 300 Query: 300 GATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKL 359 GATSREI +TSRDLVRTMNEVS+VSEQ + LAG+GQ GLTRMEDTMQ VMDAAGSVS KL Sbjct: 301 GATSREIFATSRDLVRTMNEVSLVSEQAATLAGSGQTGLTRMEDTMQAVMDAAGSVSGKL 360 Query: 360 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTA 419 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGE+GRGFSVVATEIRRLADQTA Sbjct: 361 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRLADQTA 420 Query: 420 VATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQ 479 VATYDIE+MVKEIQSAVAAGVMGMDKFSDQVRRGMQ+VQ GSQLSQIIAQVQALAPRFQ Sbjct: 421 VATYDIELMVKEIQSAVAAGVMGMDKFSDQVRRGMQEVQQVGSQLSQIIAQVQALAPRFQ 480 Query: 480 IVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKV 539 +VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAI+ELH+VSN LRNGVSRFKV Sbjct: 481 VVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIDELHLVSNGLRNGVSRFKV 540 >B2T7T5.1 B2T7T5_BURPP Methyl-accepting chemotaxis sensory transducer Length = 541 Score = 613 bits (1580), Expect = e-173, Method: Compositional matrix adjust. Identities = 323/539 (59%), Positives = 411/539 (76%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MK WTI+QRIL SF ++L++M MA ++ LG I+ A + ++DS PGLYY+T + AAW Sbjct: 1 MKQWTIRQRILCSFGIVLIVMLAMAIVTFEQLGGIDRDAKSQQEDSMPGLYYATAMRAAW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 +EN ++Q++ +D + + D L+ + L +L DY TIF D+DR F+ F++ Sbjct: 61 FENYTVTQRLVYVDADPESVKRDTERLQDTEQTLQKLLGDYGATIFRDNDRGFFNDFRQQ 120 Query: 121 RQKYRAMISEVLKMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRIN 180 +Y + + +L S + ++FN Q+ P W G +++VD NK+ AD AA I Sbjct: 121 HTQYLPIQASLLNALPSSKENAVRIFNTQLTPIWEAGRLSARKLVDNNKADADKAAESIR 180 Query: 181 DAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRN 240 +V + + +L L+ A + A++ G++L+RA+ P+ K++ ++D MR+GD ++R+ L+R Sbjct: 181 SSVEATRIVLLVMLLIAAIVAVLAGYWLLRAVTTPMAKVLRVVDVMRTGDLTQRLQLNRA 240 Query: 241 DEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 DE G L +GF+RMTDELTALV QAQKS+ +V TSVTEIAAT+R+QQATA ETAATTTEIG Sbjct: 241 DEIGALEAGFNRMTDELTALVGQAQKSAVQVTTSVTEIAATSREQQATANETAATTTEIG 300 Query: 301 ATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKLA 360 ATSREI +TSRDL+RTMNEVS V+ Q++ALAG G AGL RME+TM+ VM+AAGSV+AKLA Sbjct: 301 ATSREIFATSRDLLRTMNEVSEVAGQSAALAGTGHAGLARMEETMRLVMEAAGSVNAKLA 360 Query: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAV 420 ILNEKA NINQVV TITKVADQTNLLSLNAAIEAEKAGE+GRGF+VVATEIRRLADQTAV Sbjct: 361 ILNEKASNINQVVATITKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEIRRLADQTAV 420 Query: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 ATYDIE MVKEIQSAVAAGVMGMDKFS++VRRGM DVQ G L+QII QVQ LAPRF + Sbjct: 421 ATYDIEQMVKEIQSAVAAGVMGMDKFSEEVRRGMLDVQNVGGHLTQIIQQVQQLAPRFSM 480 Query: 481 VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKV 539 VNEGMQ QA AEQI QAL QLSEAAQQT ESL+QS+QAI++L V+N LR GVSRFKV Sbjct: 481 VNEGMQTQATGAEQITQALTQLSEAAQQTAESLRQSTQAIDDLTHVANSLRTGVSRFKV 539 >D4XEF5.1 D4XEF5_9BURK Methyl-accepting chemotaxis protein WspA Length = 539 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 326/541 (60%), Positives = 409/541 (75%), Gaps = 4/541 (0%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKN T++QRIL SF +IL +MALM + L IE+ + D+ PG+YYST I A+W Sbjct: 1 MKNLTLRQRILASFMVILAIMALMVVVDYRRLLHIEDEVVMINTDAVPGIYYSTSIRASW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 + ++ Q D N+ ER+A L L ++ +L+ + Y +TI D DR +F +F++ Sbjct: 61 FAGFVIMQDAFNSD-NDQERRATLETLPKSDRQLEENVDFYRRTIARDDDRSMFVEFEKD 119 Query: 121 RQKYRAMISEVLKMDFSQR--APIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASR 178 Q+Y+ + +++L + A ++ NE +RP + +G + MV NK AD+AA+ Sbjct: 120 LQEYKRIRADILATTGANDPLAARTRVKNE-LRPAFYKGRDILATMVAENKKQADEAATS 178 Query: 179 INDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALD 238 I AV SA+ ML SL A+ AALVCGF L+RAI P++ ++ L+ GD +RR+AL Sbjct: 179 IGKAVDSAEVGMLVSLGMAIAAALVCGFLLLRAIANPMRDIVKTLELTGGGDLTRRLALA 238 Query: 239 RNDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTE 298 R DEF + +GF+ M DEL LV + Q+S+ +VATSVTEIAAT++QQQATA+E AATTTE Sbjct: 239 RKDEFNAIETGFNGMVDELKGLVGKTQRSAVQVATSVTEIAATSKQQQATASEVAATTTE 298 Query: 299 IGATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAK 358 IGATSREI +TSR+LVRTM EVS +EQT++LAG+GQ GL RMEDTM+NV+ AAGSV+AK Sbjct: 299 IGATSREISATSRELVRTMTEVSSAAEQTASLAGSGQVGLARMEDTMRNVVGAAGSVNAK 358 Query: 359 LAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQT 418 LAILNEKAGNI QVVTTITKVADQTNLLSLNAAIEAEKAGE+GRGF VVATEIRRLADQT Sbjct: 359 LAILNEKAGNITQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFVVVATEIRRLADQT 418 Query: 419 AVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRF 478 AVATYDIE MV+EIQS+V+AGVMGMDKFS++VRRGM D+Q G QLSQII QVQ LAPR Sbjct: 419 AVATYDIEQMVREIQSSVSAGVMGMDKFSEEVRRGMADMQQVGDQLSQIIQQVQTLAPRV 478 Query: 479 QIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFK 538 Q+VNEGMQAQA AEQINQAL QLS+AAQQTVESL+QSS AIEEL +V+N+LR+GVSRFK Sbjct: 479 QMVNEGMQAQATGAEQINQALQQLSDAAQQTVESLRQSSLAIEELTLVANDLRSGVSRFK 538 Query: 539 V 539 V Sbjct: 539 V 539 >D5NB52.1 D5NB52_9BURK Methyl-accepting chemotaxis sensory transducer Length = 541 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 313/539 (58%), Positives = 407/539 (75%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MK WTI+QRIL SF ++L++M MA ++ LG I+ A + +QDS PGLY +T + AAW Sbjct: 1 MKQWTIRQRILCSFGIVLIVMLAMAIVAFQQLGGIDRDAKSQQQDSMPGLYNATAMRAAW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 +EN ++Q++ +D + + D A L+ + L ++ DY TIF D DR++F+ F++ Sbjct: 61 FENYSVTQRLIYVDADPDSVKRDTARLQETQQTLQKIINDYGATIFRDVDREVFNDFRQQ 120 Query: 121 RQKYRAMISEVLKMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRIN 180 + +Y ++ + +L + + ++FN Q+ P W G +++V+ NK AD +A I Sbjct: 121 QAQYLSIQASLLDALPASKDNAARVFNTQLTPLWETGRLTVRKLVENNKGYADQSAESIR 180 Query: 181 DAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDRN 240 +V + + +L L+ A + A + G++L+R + P+ K++ ++D MR+GD ++R+ L+R Sbjct: 181 SSVETTRVVLLVMLLVAAVLATLAGYWLVRGVTTPMAKMLQVVDVMRTGDLTQRLQLNRT 240 Query: 241 DEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEIG 300 DE G L +GF+RM DELTALV QAQKS+ +V TSVTEIAAT+R+QQATA ET ATTTEIG Sbjct: 241 DEIGALEAGFNRMADELTALVGQAQKSAMQVTTSVTEIAATSREQQATANETVATTTEIG 300 Query: 301 ATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKLA 360 ATSREI +TSRDL+R MNEVS V+ Q++ LAG G AGL RME+TM+ VM+AAGSV+AKLA Sbjct: 301 ATSREIFATSRDLLRAMNEVSEVAGQSAVLAGTGHAGLARMEETMRLVMEAAGSVNAKLA 360 Query: 361 ILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTAV 420 ILNEKA NINQVV TITKVADQTNLLSLNAAIEAEKAGE+GRGF+VVATEIRRLADQTAV Sbjct: 361 ILNEKASNINQVVATITKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEIRRLADQTAV 420 Query: 421 ATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQI 480 ATYDIE MVKEIQSAVAAGVMGMDKFS++VRRGM DVQ G L++II QVQ LAPRF + Sbjct: 421 ATYDIEQMVKEIQSAVAAGVMGMDKFSEEVRRGMLDVQNVGGHLTEIIQQVQQLAPRFSM 480 Query: 481 VNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKV 539 VN+GMQ QA AEQI QAL QLSEAAQQT ESL+QS+QAI++L V+N LR GVSRFKV Sbjct: 481 VNDGMQTQATGAEQITQALTQLSEAAQQTAESLRQSTQAIDDLTHVANSLRTGVSRFKV 539 >E5U3D0.1 E5U3D0_ALCXX Methyl-accepting chemotaxis transducer Length = 539 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 321/540 (59%), Positives = 400/540 (74%), Gaps = 2/540 (0%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKN T+++RI+ SF +IL +MALM + L ++E A ++ D+ PG+YYST I A+W Sbjct: 1 MKNLTLRERIIASFLVILAIMALMVVVDYQRLLQVEAEAKSINTDAVPGIYYSTSIRASW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 + + Q DT E ERQA LA L +N + L E Y +T+ D+++F F++ Sbjct: 61 FAGFVAVQDAFNSDT-EQERQAGLAALPKNDQHLKDDIEQYRRTVVRGEDQRMFADFEKA 119 Query: 121 RQKYRAMISEVLKMD-FSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRI 179 Q Y + +E+L+ + A +RP + G + MV NK AD++A I Sbjct: 120 LQTYMRIRAEILEPAMLADPARAQAKIKSDLRPAFYAGRDVLATMVAANKEQADESAIGI 179 Query: 180 NDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDR 239 AV A+ ML SL A++AA++CG L+RAI P+ ++ L+ GD +RR+ L R Sbjct: 180 QKAVDKAEVGMLVSLGLAIVAAIICGVLLLRAIVNPMSAIVKTLEATGGGDLTRRLTLAR 239 Query: 240 NDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 DEF + SGF+ M DELT LV + Q+S+ +VATSVTEIAAT++QQQATA+E AATTTEI Sbjct: 240 KDEFNAIESGFNGMVDELTGLVGKTQRSAVQVATSVTEIAATSKQQQATASEVAATTTEI 299 Query: 300 GATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKL 359 GATSREI +TSR+LVRTM EVS +EQT++LAG+GQ GL RMEDTM+NV+ AAGSV+AKL Sbjct: 300 GATSREISATSRELVRTMTEVSSAAEQTASLAGSGQVGLARMEDTMRNVVGAAGSVNAKL 359 Query: 360 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTA 419 AILNEKAGNI QVVTTITKVADQTNLLSLNAAIEAEKAGE+GRGF VVATEIRRLADQTA Sbjct: 360 AILNEKAGNITQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFVVVATEIRRLADQTA 419 Query: 420 VATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQ 479 VATYDIE MV+EIQS+V+AGVMGMDKFS++VRRGM D+Q G QLSQII QVQ LAPR Q Sbjct: 420 VATYDIEQMVREIQSSVSAGVMGMDKFSEEVRRGMADMQQVGDQLSQIIQQVQTLAPRVQ 479 Query: 480 IVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKV 539 +VNEGMQAQA AEQINQAL QLS+AAQQTVESL+QSS AIEEL +V+N+LR+GVSRFKV Sbjct: 480 MVNEGMQAQATGAEQINQALQQLSDAAQQTVESLRQSSLAIEELTLVANDLRSGVSRFKV 539 >Q46V23.1 Q46V23_CUPPJ Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer Length = 539 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 325/545 (59%), Positives = 405/545 (74%), Gaps = 12/545 (2%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 M +WTI+ RIL SF ILL+MALM ++ L IE + +D+ PGL YST I AW Sbjct: 1 MNHWTIRTRILASFTFILLVMALMGVVAYNRLSAIERETNLMLKDALPGLNYSTGIRGAW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 E +++ + + T E++RQ +RLDRL++ Y+ TI D+DR F+Q+K Sbjct: 61 GEVYVLAWETVKAGT-ESQRQGYQQQSAEVRQRLDRLEQQYESTITRDNDRATFNQYKAA 119 Query: 121 RQKYRAMISEVLKMDFSQRAP------IDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADD 174 R +Y + L + +Q A + + + W + +L Q +VD N ++ + Sbjct: 120 RSRY-----DQLALPLTQSASWKGGEAAEALLRGEANQHWAEVRRLAQTLVDDNNAVNEK 174 Query: 175 AASRINDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRR 234 AA IN AV+SA+ + +L+ A+ + +CG+ L+RAI P++ ++G+L +R GD R Sbjct: 175 AAHGINAAVSSAKIGIEVALLVAVAMSAICGYLLLRAITVPMRSIVGLLAGIRGGDLRLR 234 Query: 235 VALDRNDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAA 294 +AL R DEF + GF++MT ELT+LV QAQ+S+ +V TSV EIAATARQQQATA ETAA Sbjct: 235 MALGRGDEFQDVEQGFNQMTGELTSLVGQAQRSAIQVTTSVNEIAATARQQQATATETAA 294 Query: 295 TTTEIGATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGS 354 TTT+IGATSREI +T+RDLVRT+NEVS +EQT+ LAG GQ GL+RME TMQ+VMDAAGS Sbjct: 295 TTTQIGATSREISATARDLVRTINEVSNAAEQTAGLAGTGQVGLSRMEATMQHVMDAAGS 354 Query: 355 VSAKLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRL 414 V+AKLA LNEKAGNINQVVTTI KVADQTNLLSLNAAIEAEKAGE+GRGFSVVATEIRRL Sbjct: 355 VNAKLATLNEKAGNINQVVTTIAKVADQTNLLSLNAAIEAEKAGEYGRGFSVVATEIRRL 414 Query: 415 ADQTAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQAL 474 ADQTAVATYDIE MV+EIQSAVAAGVMGMDKFS++VRRGM DV G QLSQII QVQ+L Sbjct: 415 ADQTAVATYDIEQMVREIQSAVAAGVMGMDKFSEEVRRGMSDVTQVGDQLSQIIGQVQSL 474 Query: 475 APRFQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGV 534 APR +VNEGMQAQA AEQINQAL+QLSEAAQQTVESL+QSSQAI+EL +V+NELR+GV Sbjct: 475 APRVLMVNEGMQAQAGGAEQINQALMQLSEAAQQTVESLRQSSQAIDELTLVANELRSGV 534 Query: 535 SRFKV 539 SRFKV Sbjct: 535 SRFKV 539 >E3HMC0.1 E3HMC0_ACHXA HAMP domain protein 13 Length = 539 Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust. Identities = 324/540 (60%), Positives = 402/540 (74%), Gaps = 2/540 (0%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKN T++QRIL SF IL +MALM + L IE+ + D+ PG+YYST I A+W Sbjct: 1 MKNLTLRQRILASFLAILAIMALMVVMDYRRLLVIESEVELINNDAVPGIYYSTSIRASW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 + ++ Q +DT E ER LA L + L E Y +TI + DR +F +F++ Sbjct: 61 FAGFVVVQDALNMDT-EQERNTILAGLPETDKLLADHTEQYRRTIGREDDRGMFSEFEKE 119 Query: 121 RQKYRAMISEVL-KMDFSQRAPIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAASRI 179 Q+Y+ + + VL + A + ++RP + +G + RMV NK ADDAA+ I Sbjct: 120 LQEYKRIRANVLAPAMLADPARAQALIKAELRPAFYKGRDILARMVLENKKQADDAAAAI 179 Query: 180 NDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVALDR 239 +V SA+ ML SL A++AA++CG LMRAI P++ ++ L+ GD +RR+ L R Sbjct: 180 RQSVDSAEVRMLVSLALAIIAAIICGIMLMRAIANPMRAIVKTLEATGGGDLTRRLTLAR 239 Query: 240 NDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTTEI 299 DEF + +GF+ M DELT LV + Q+S+ +VATSVTEIAAT++QQQATA+E AATTTEI Sbjct: 240 KDEFNAIETGFNGMVDELTGLVGKTQRSAVQVATSVTEIAATSKQQQATASEVAATTTEI 299 Query: 300 GATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSAKL 359 G TSREI +TSR+LVRTM EVS +EQT+ALAG+GQ GL RMEDTM+NV+ AAGSV+AKL Sbjct: 300 GVTSREISATSRELVRTMAEVSGAAEQTAALAGSGQVGLARMEDTMRNVVGAAGSVNAKL 359 Query: 360 AILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQTA 419 AILNEKAGNI QVVTTITKVADQTNLLSLNAAIEAEKAGE+GRGF VVATEIRRLADQTA Sbjct: 360 AILNEKAGNITQVVTTITKVADQTNLLSLNAAIEAEKAGEYGRGFVVVATEIRRLADQTA 419 Query: 420 VATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPRFQ 479 VATYDIE MV+EIQS+V+AGVMGMDKFS++VRRGM D+Q G QLSQII QVQ LAPR Q Sbjct: 420 VATYDIEQMVREIQSSVSAGVMGMDKFSEEVRRGMADMQQVGDQLSQIIQQVQTLAPRVQ 479 Query: 480 IVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRFKV 539 +VNEGMQAQA AEQINQAL QLS+AAQQTVESL+QS+ AIEEL +V+N+LR+GVSRFKV Sbjct: 480 MVNEGMQAQATGAEQINQALQQLSDAAQQTVESLRQSTLAIEELTLVANDLRSGVSRFKV 539 >A6V178.1 A6V178_PSEA7 Probable chemotaxis transducer Length = 542 Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust. Identities = 322/542 (59%), Positives = 405/542 (74%), Gaps = 3/542 (0%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKNWT++QRIL SFA+I+ +M LMA S V + +E GA ++ D+ PG+Y+ T++ ++W Sbjct: 1 MKNWTVRQRILASFAVIIAIMLLMAATSYVKMLTVEKGAYRVQDDAMPGMYFITLVRSSW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDS--DRKLFDQFK 118 +N L +Q++ I + A +A+ + + ERLD+ Y KT+ D D +L F Sbjct: 61 TDNYLQTQELFGITDDHALSKAEADSILASEERLDQQIASYQKTMNPDEARDHELLAGFL 120 Query: 119 ETRQKYRAMISEVLKMDFSQR-APIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAAS 177 R+ Y +VL++ +R K+ + WR G + M++ NK IAD A+ Sbjct: 121 GVRKAYLEQHDKVLELYREKRFEEAGKLLAGPLTQHWRDGRKYLNEMIELNKDIADRASD 180 Query: 178 RINDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVAL 237 I +AV A+ +ML +L+ A+ A VCGF L+RAI +P+QK++ LD M GD + R+ L Sbjct: 181 NIVNAVDDAELSMLITLLLAVAVAGVCGFLLLRAITQPIQKIVRSLDLMAGGDLTARLDL 240 Query: 238 DRNDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTT 297 R DEFG + +GF+ M +EL LVSQAQ+SS +V TSVTEIAAT++QQQATA ETAATTT Sbjct: 241 GRRDEFGAIETGFNGMAEELKGLVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTT 300 Query: 298 EIGATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSA 357 EIGATSREI +TSRDLVRTM+EVS +EQTS LAG+GQ GL RME+TM +VM AA V+A Sbjct: 301 EIGATSREIAATSRDLVRTMSEVSGAAEQTSTLAGSGQLGLARMEETMHHVMGAADLVNA 360 Query: 358 KLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQ 417 KLAILNEKAGNINQVVTTI KVADQTNLLSLNAAIEAEKAGE+GRGF+VVATE+RRLADQ Sbjct: 361 KLAILNEKAGNINQVVTTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQ 420 Query: 418 TAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPR 477 TAVATYDIE MV+EIQSAV+AGVMGMDKFS++VRRG+ +V G QLSQII QVQALAPR Sbjct: 421 TAVATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGIAEVGQVGEQLSQIIQQVQALAPR 480 Query: 478 FQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRF 537 Q+VNEGMQAQA AEQINQALVQL EA QTVESL+Q+S AI+EL++V+N LRNGVSRF Sbjct: 481 VQMVNEGMQAQATGAEQINQALVQLGEATGQTVESLRQASFAIDELNLVANGLRNGVSRF 540 Query: 538 KV 539 KV Sbjct: 541 KV 542 >Q3KHG1.1 Q3KHG1_PSEPF Putative methyl-accepting chemotaxis protein Length = 540 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 320/542 (59%), Positives = 399/542 (73%), Gaps = 5/542 (0%) Query: 1 MKNWTIKQRILGSFALILLLMALMAGISAVNLGRIENGATALRQDSTPGLYYSTMINAAW 60 MKNWT++QRIL SFA+I+ +M LM +S L +IE ++R D+ PG+YYS+MI AW Sbjct: 1 MKNWTLRQRILASFAVIIAIMLLMVVVSYSRLLKIEASENSVRDDAIPGVYYSSMIRGAW 60 Query: 61 YENLLMSQQIAQIDTNEAERQADLALLRRNGERLDRLQEDYDKTIFSDSDRKLFDQFKET 120 ++ L +Q++ + + D A + RL +Y T+ +D D+ F F++ Sbjct: 61 VDSYLQTQELLGLKEGQGISSEDAADYKAFESRLQEQMANYRGTVVTDEDKLEFAAFEKY 120 Query: 121 RQKYRAMISEVLKMDFSQR---APIDKMFNEQIRPQWRQGYQLTQRMVDTNKSIADDAAS 177 Y + VL D +R A K+F+EQ+ P W G ++ NK +AD A + Sbjct: 121 HDAYLKIQDAVL--DLHKRNLEADAVKLFHEQLTPTWYSGRMKLNDIISENKRVADQAMA 178 Query: 178 RINDAVTSAQFAMLSSLMAALLAALVCGFFLMRAINEPLQKLMGILDYMRSGDFSRRVAL 237 I++AV +A+ +M SL+ A+LAA CG LMRAI P+ +++ ILD MR+GD S R+ L Sbjct: 179 NIDEAVAAAKVSMFVSLVVAVLAAGFCGLLLMRAIMAPMNRIVQILDIMRTGDLSSRLNL 238 Query: 238 DRNDEFGHLGSGFDRMTDELTALVSQAQKSSARVATSVTEIAATARQQQATAAETAATTT 297 +R DEFG + +GF+ M ELT+LVSQAQ+SS +V TSVTEIAAT++QQQATA ETAATTT Sbjct: 239 ERKDEFGAVETGFNDMMTELTSLVSQAQRSSVQVTTSVTEIAATSKQQQATATETAATTT 298 Query: 298 EIGATSREIHSTSRDLVRTMNEVSVVSEQTSALAGNGQAGLTRMEDTMQNVMDAAGSVSA 357 EIGATSREI +TSRDLVRTM EVS ++Q S LAG+GQ GL RMEDTM +VM AA V+A Sbjct: 299 EIGATSREIAATSRDLVRTMTEVSTAADQASVLAGSGQQGLARMEDTMHSVMGAADLVNA 358 Query: 358 KLAILNEKAGNINQVVTTITKVADQTNLLSLNAAIEAEKAGEHGRGFSVVATEIRRLADQ 417 KLAILNEKAGNINQVV TI KVADQTNLLSLNAAIEAEKAGE+GRGF+VVATE+RRLADQ Sbjct: 359 KLAILNEKAGNINQVVVTIVKVADQTNLLSLNAAIEAEKAGEYGRGFAVVATEVRRLADQ 418 Query: 418 TAVATYDIEVMVKEIQSAVAAGVMGMDKFSDQVRRGMQDVQTAGSQLSQIIAQVQALAPR 477 TAVATYDIE MV+EIQSAV+AGVMGMDKFS++VRRGM +VQ G QLSQII QVQALAPR Sbjct: 419 TAVATYDIEQMVREIQSAVSAGVMGMDKFSEEVRRGMAEVQQVGEQLSQIIHQVQALAPR 478 Query: 478 FQIVNEGMQAQANSAEQINQALVQLSEAAQQTVESLQQSSQAIEELHVVSNELRNGVSRF 537 +VNEGMQAQA AEQIN ALVQL +A+ QTVESL+Q+S AI+EL V+ LR+GVSRF Sbjct: 479 VLMVNEGMQAQATGAEQINHALVQLGDASSQTVESLRQASFAIDELSQVAVGLRSGVSRF 538 Query: 538 KV 539 KV Sbjct: 539 KV 540