BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0176.p (186 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0C0.1 D8J0C0_HERSS Flagellar transcription activator regulato... 385 e-105 A4G4N1.1 A4G4N1_HERAR Flagellar transcriptional activator FlhC 294 4e-78 A6SZU4.1 A6SZU4_JANMA FlhC flagellar transcriptional activator 287 5e-76 F1W2Q8.1 F1W2Q8_9BURK Flagellar transcriptional activator flhC 271 2e-71 Q2Y9G2.1 Q2Y9G2_NITMU Flagellar transcriptional activator FlhC 257 5e-67 E1TCM8.1 E1TCM8_BURSG Flagellar transcriptional activator FlhC 251 3e-65 E8YII3.1 E8YII3_9BURK Flagellar transcriptional activator FlhC 247 5e-64 Q63PR3.1 Q63PR3_BURPS Flagellar regulon master regulator subunit... 246 1e-63 Q62G04.1 Q62G04_BURMA Flagellar transcriptional activator FlhC 246 1e-63 Q3JY55.1 Q3JY55_BURP1 Flagellar transcriptional activator FlhC 246 1e-63 >D8J0C0.1 D8J0C0_HERSS Flagellar transcription activator regulator protein Length = 200 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 185/186 (99%), Positives = 185/186 (99%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS Sbjct: 15 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM Sbjct: 75 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLGLDEAARPLAAPVAV 180 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLGL EAARPLAAPVAV Sbjct: 135 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVVLGLAEAARPLAAPVAV 194 Query: 181 PLAAVA 186 PLAAVA Sbjct: 195 PLAAVA 200 >A4G4N1.1 A4G4N1_HERAR Flagellar transcriptional activator FlhC Length = 182 Score = 294 bits (752), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 141/166 (84%), Positives = 152/166 (91%), Gaps = 1/166 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFSTDWFITWQPNIHSS Sbjct: 15 LAIELIKLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFSTDWFITWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LFI IH+YL+EHA+ISGIEAVMKAYKLYLEQV + GEPVLSLTRAWTLVRFF+SKML Sbjct: 75 LFIGIHKYLIEHAQISGIEAVMKAYKLYLEQVDMGEDGEPVLSLTRAWTLVRFFDSKMLE 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK-DAVVL 165 T C +CNGHFVVHRLDL+ +Y CGLCHMPSRAGKTK+AK DA +L Sbjct: 135 TACCSECNGHFVVHRLDLNANYTCGLCHMPSRAGKTKRAKMDANLL 180 >A6SZU4.1 A6SZU4_JANMA FlhC flagellar transcriptional activator Length = 181 Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 135/160 (84%), Positives = 147/160 (91%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELINLGARLQLLESETSLSRERLLKLYKEL+GVSPPKGMLPFSTDWFITWQPNIHSS Sbjct: 15 LAIELINLGARLQLLESETSLSRERLLKLYKELRGVSPPKGMLPFSTDWFITWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF+ IH+YL+EHA+ISGI+AVMKAYKLYLEQV GEPVLSLTRAWTLVRFF+SKML Sbjct: 75 LFMGIHKYLIEHAQISGIQAVMKAYKLYLEQVELGADGEPVLSLTRAWTLVRFFDSKMLA 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAK 160 T C +C G+FVVHRLDL+ +Y CGLCHMPSRAGKTK+AK Sbjct: 135 TACCSECGGNFVVHRLDLNANYTCGLCHMPSRAGKTKRAK 174 >F1W2Q8.1 F1W2Q8_9BURK Flagellar transcriptional activator flhC Length = 184 Score = 271 bits (694), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 128/158 (81%), Positives = 143/158 (90%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPN+HSS Sbjct: 15 LAIELIKLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNVHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LFINI+++L EHA I+GI AV+KAYKLYLEQ+G EPVLSLTRAWT+VRFF+SKML Sbjct: 75 LFINIYKFLQEHAHITGIVAVVKAYKLYLEQMGPEGDEEPVLSLTRAWTMVRFFDSKMLN 134 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKK 158 T C +C+GHFVVH+LDL+ Y+CGLCHMPSRAGKT+K Sbjct: 135 TACCTECSGHFVVHQLDLNAGYVCGLCHMPSRAGKTRK 172 >Q2Y9G2.1 Q2Y9G2_NITMU Flagellar transcriptional activator FlhC Length = 181 Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 121/163 (74%), Positives = 138/163 (84%), Gaps = 1/163 (0%) Query: 2 AIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSSL 61 AIELI LGARLQLLESET+LSRERL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS+ Sbjct: 16 AIELIRLGARLQLLESETTLSRERLIKLYKELKGVSPPKGMLPFSTDWFLTWQPNIHSSV 75 Query: 62 FINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLMT 121 F +I+RYL+ H GI A++K+YKLYLE Q EP+LSLTRAWTLVRFFESK++ T Sbjct: 76 FADIYRYLIAHGDCRGISAIIKSYKLYLEHC-QVCEMEPILSLTRAWTLVRFFESKLMQT 134 Query: 122 TPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDAVV 164 T C +C GHFVVH DLH Y+CGLCHMPSRAGKT KA+ A+V Sbjct: 135 TACNQCGGHFVVHANDLHHRYVCGLCHMPSRAGKTNKARTAMV 177 >E1TCM8.1 E1TCM8_BURSG Flagellar transcriptional activator FlhC Length = 186 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 116/162 (71%), Positives = 136/162 (83%), Gaps = 1/162 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ETSLSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPN HSS Sbjct: 15 LAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNFHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ +H R +GI++++K+Y+LYLE V +D EPVLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMADHGRCAGIQSIVKSYRLYLEHVQLHD-DEPVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDA 162 TPCC+C GHFV H D ++CGLC PSRAGKTKK DA Sbjct: 134 ITPCCRCGGHFVAHAHDPQHGFVCGLCQPPSRAGKTKKVADA 175 >E8YII3.1 E8YII3_9BURK Flagellar transcriptional activator FlhC Length = 186 Score = 247 bits (631), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 115/162 (70%), Positives = 135/162 (83%), Gaps = 1/162 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ETSLSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPN HSS Sbjct: 15 LAIELIELGARLQLLEAETSLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNFHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ +H + I++++K+Y+LYLE + Q A EPVLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMADHGGCATIQSIVKSYRLYLEHM-QLHADEPVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKAKDA 162 TPCC+C GHFV H D Q ++CGLC PSRAGKTKK DA Sbjct: 134 ITPCCRCGGHFVAHAHDPKQGFVCGLCQPPSRAGKTKKVADA 175 >Q63PR3.1 Q63PR3_BURPS Flagellar regulon master regulator subunit FlhC Length = 183 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 133/159 (83%), Gaps = 1/159 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ET+LSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS Sbjct: 15 LAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ EH I++++KAY+LYLE VG +D E VLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSD-DEAVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKA 159 TPC +C GHFV H D H Y+CGLC PSRAGKT+KA Sbjct: 134 MTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKA 172 >Q62G04.1 Q62G04_BURMA Flagellar transcriptional activator FlhC Length = 183 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 133/159 (83%), Gaps = 1/159 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ET+LSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS Sbjct: 15 LAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ EH I++++KAY+LYLE VG +D E VLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSD-DEAVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKA 159 TPC +C GHFV H D H Y+CGLC PSRAGKT+KA Sbjct: 134 MTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKA 172 >Q3JY55.1 Q3JY55_BURP1 Flagellar transcriptional activator FlhC Length = 183 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 115/159 (72%), Positives = 133/159 (83%), Gaps = 1/159 (0%) Query: 1 LAIELINLGARLQLLESETSLSRERLLKLYKELKGVSPPKGMLPFSTDWFITWQPNIHSS 60 LAIELI LGARLQLLE+ET+LSR+RL+KLYKELKGVSPPKGMLPFSTDWF+TWQPNIHSS Sbjct: 15 LAIELIELGARLQLLEAETNLSRDRLIKLYKELKGVSPPKGMLPFSTDWFMTWQPNIHSS 74 Query: 61 LFINIHRYLVEHARISGIEAVMKAYKLYLEQVGQNDAGEPVLSLTRAWTLVRFFESKMLM 120 LF NI+R++ EH I++++KAY+LYLE VG +D E VLSLTRAWTLVRFF+S ML Sbjct: 75 LFYNIYRFMREHGGCDSIQSIVKAYRLYLEHVGLSD-DEAVLSLTRAWTLVRFFDSGMLQ 133 Query: 121 TTPCCKCNGHFVVHRLDLHQDYLCGLCHMPSRAGKTKKA 159 TPC +C GHFV H D H Y+CGLC PSRAGKT+KA Sbjct: 134 MTPCTRCGGHFVAHAHDPHHGYVCGLCQPPSRAGKTRKA 172