BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0035.0132.p (79 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZU6.1 D8IZU6_HERSS Protein hfq 162 2e-38 A6SZW5.1 HFQ_JANMA Protein hfq 154 4e-36 A4G4K7.1 HFQ_HERAR Protein hfq 154 5e-36 F1VX33.1 F1VX33_9BURK RNA-binding protein Hfq 150 6e-35 B5SLZ2.1 B5SLZ2_RALSO Protein hfq 148 2e-34 B5S180.1 B5S180_RALSO Protein hfq 2 148 2e-34 A3RVC9.1 A3RVC9_RALSO Protein hfq 148 2e-34 Q8Y025.1 HFQ_RALSO Protein hfq 148 2e-34 D8NUR1.1 D8NUR1_RALSO Protein hfq 3 147 4e-34 Q1LLJ6.1 HFQ_RALME Protein hfq 147 5e-34 >D8IZU6.1 D8IZU6_HERSS Protein hfq Length = 79 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 79/79 (100%), Positives = 79/79 (100%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSDE 79 STVVPARAVNLSLESSSDE Sbjct: 61 STVVPARAVNLSLESSSDE 79 >A6SZW5.1 HFQ_JANMA Protein hfq Length = 78 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 73/78 (93%), Positives = 77/78 (98%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 M+NKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGH+ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MTNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVNLSLES ++ Sbjct: 61 STVVPARAVNLSLESEAE 78 >A4G4K7.1 HFQ_HERAR Protein hfq Length = 78 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 73/78 (93%), Positives = 77/78 (98%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 M+NKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGH+ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MTNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVNLSLES ++ Sbjct: 61 STVVPARAVNLSLESDAE 78 >F1VX33.1 F1VX33_9BURK RNA-binding protein Hfq Length = 78 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 71/78 (91%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQ+LQDPFLNALRKEHVPVSIYLVNGIKLQGH+ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQMLQDPFLNALRKEHVPVSIYLVNGIKLQGHIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAV L+LE +D Sbjct: 61 STVVPARAVTLNLEPEAD 78 >B5SLZ2.1 B5SLZ2_RALSO Protein hfq Length = 79 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/78 (89%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQG++ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVN ++ +SD Sbjct: 61 STVVPARAVNFRVDEASD 78 >B5S180.1 B5S180_RALSO Protein hfq 2 Length = 79 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/78 (89%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQG++ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVN ++ +SD Sbjct: 61 STVVPARAVNFRVDEASD 78 >A3RVC9.1 A3RVC9_RALSO Protein hfq Length = 79 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/78 (89%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQG++ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVN ++ +SD Sbjct: 61 STVVPARAVNFRVDEASD 78 >Q8Y025.1 HFQ_RALSO Protein hfq Length = 79 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 70/78 (89%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQG++ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVN ++ +SD Sbjct: 61 STVVPARAVNFRVDEASD 78 >D8NUR1.1 D8NUR1_RALSO Protein hfq 3 Length = 79 Score = 147 bits (372), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 69/78 (88%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQG++ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVN ++ ++D Sbjct: 61 STVVPARAVNFRVDEATD 78 >Q1LLJ6.1 HFQ_RALME Protein hfq Length = 79 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 70/78 (89%), Positives = 75/78 (96%) Query: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLLRNTVTQMVYKHAI 60 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQG++ESFDQYVVLLRNTVTQMVYKHAI Sbjct: 1 MSNKGQLLQDPFLNALRKEHVPVSIYLVNGIKLQGNIESFDQYVVLLRNTVTQMVYKHAI 60 Query: 61 STVVPARAVNLSLESSSD 78 STVVPARAVN ++ SS+ Sbjct: 61 STVVPARAVNFRVDDSSE 78