BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0035.0019.p         (62 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYP8.1 D8IYP8_HERSS UDP-glucose 4-epimerase protein EC=5.1.3.2       93   1e-17
A2RPW3.1 A2RPW3_HERSE UDP-glucose 4-epimerase protein                  93   1e-17
Q2YCE2.1 Q2YCE2_NITMU NAD-dependent epimerase/dehydratase              77   7e-13
Q3SMJ3.1 Q3SMJ3_THIDA NAD-dependent epimerase/dehydratase              77   1e-12
Q1NTS9.1 Q1NTS9_9DELT NAD-dependent epimerase/dehydratase:3-beta...    75   4e-12
B7RW67.1 B7RW67_9GAMM NAD dependent epimerase/dehydratase family...    74   1e-11
A7K3F1.1 A7K3F1_VIBSE VI polysaccharide biosynthesis protein Vip...    73   2e-11
Q597F5.1 Q597F5_VIBVU UDP-GlcNAc C4 epimerase                          73   2e-11
Q47Y09.1 Q47Y09_COLP3 NAD-dependent epimerase/dehydratase family       73   2e-11
D4XJB7.1 D4XJB7_9BURK O-antigen biosynthesis protein EC=5.1.3.2        72   3e-11

>D8IYP8.1 D8IYP8_HERSS UDP-glucose 4-epimerase protein EC=5.1.3.2
          Length = 347

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 43
           VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA
Sbjct: 209 VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 251


>A2RPW3.1 A2RPW3_HERSE UDP-glucose 4-epimerase protein
          Length = 347

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 43
           VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA
Sbjct: 209 VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 251


>Q2YCE2.1 Q2YCE2_NITMU NAD-dependent epimerase/dehydratase
          Length = 350

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/43 (81%), Positives = 39/43 (90%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 43
           VIPQWV+A+IRN  L INGDG+TSRDFCYIDNVVQANLLAA +
Sbjct: 209 VIPQWVSALIRNQTLYINGDGETSRDFCYIDNVVQANLLAALS 251


>Q3SMJ3.1 Q3SMJ3_THIDA NAD-dependent epimerase/dehydratase
          Length = 342

 Score = 76.6 bits (187), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/49 (71%), Positives = 41/49 (83%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATAPAALAA 49
           VIP+WV +MI    + INGDG+TSRDFCYIDNV+QANLLAAT+P A AA
Sbjct: 209 VIPKWVASMIHGEPVYINGDGETSRDFCYIDNVIQANLLAATSPHADAA 257


>Q1NTS9.1 Q1NTS9_9DELT NAD-dependent epimerase/dehydratase:3-beta
           hydroxysteroid dehydrogenase/isomerase:Polysaccharide
           biosynthesis protein CapD:Nucleotide sugar epimerase
          Length = 344

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/52 (65%), Positives = 41/52 (78%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATAPAALAACAI 52
           VIP+W+ AMI+N  + INGDG+TSRDFCYIDN VQ NLLAAT+P   AA  +
Sbjct: 209 VIPKWIAAMIQNETVFINGDGETSRDFCYIDNAVQVNLLAATSPNLEAANQV 260


>B7RW67.1 B7RW67_9GAMM NAD dependent epimerase/dehydratase family protein
          Length = 347

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 39/43 (90%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 43
           VIP+W+ AMI N ++ INGDG+TSRDFC+IDNVVQANLLAAT+
Sbjct: 209 VIPKWIAAMISNHDVIINGDGETSRDFCFIDNVVQANLLAATS 251


>A7K3F1.1 A7K3F1_VIBSE VI polysaccharide biosynthesis protein VipB/tviC
           EC=5.1.3.2
          Length = 340

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 43
           VIP+W  AMI   ++ INGDG+TSRDFCYIDNVVQ NLLAATA
Sbjct: 209 VIPKWTAAMINGEDVYINGDGETSRDFCYIDNVVQMNLLAATA 251


>Q597F5.1 Q597F5_VIBVU UDP-GlcNAc C4 epimerase
          Length = 340

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 37/43 (86%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATA 43
           VIP+W +AMI N E+ INGDG+TSRDFCYI+NVVQ N+LAAT 
Sbjct: 209 VIPKWTSAMINNEEVFINGDGETSRDFCYIENVVQMNMLAATG 251


>Q47Y09.1 Q47Y09_COLP3 NAD-dependent epimerase/dehydratase family
          Length = 344

 Score = 72.8 bits (177), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/46 (69%), Positives = 38/46 (82%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATAPAA 46
           VIP+W  AMI N EL INGDG+TSRDFC+++N VQAN+LAATA  A
Sbjct: 213 VIPKWTVAMIANEELLINGDGETSRDFCFVENAVQANILAATANDA 258


>D4XJB7.1 D4XJB7_9BURK O-antigen biosynthesis protein EC=5.1.3.2
          Length = 341

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/44 (68%), Positives = 37/44 (84%)

Query: 1   VIPQWVTAMIRNGELRINGDGQTSRDFCYIDNVVQANLLAATAP 44
           VIP+W  AMI+  ++ INGDG+TSRDFC++DN VQANLLAA AP
Sbjct: 210 VIPKWTAAMIKGDDVTINGDGETSRDFCFVDNAVQANLLAAMAP 253