BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0052.p (249 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITV8.1 D8ITV8_HERSS Two component response regulator protein 506 e-141 A6SU98.1 A6SU98_JANMA Two-components system response regulator 340 9e-92 A4G1H8.1 A4G1H8_HERAR Putative two-component response regulator ... 336 2e-90 B2U789.1 B2U789_RALPJ Two component transcriptional regulator, F... 315 5e-84 E5ANC0.1 E5ANC0_BURRH COG: Response regulator containing CheY-li... 314 6e-84 E1T4L8.1 E1T4L8_BURSG Two component transcriptional regulator, F... 312 2e-83 C3X5B8.1 C3X5B8_OXAFO Two-components system response regulator 310 1e-82 B5WD15.1 B5WD15_9BURK Two component transcriptional regulator, F... 310 2e-82 C3XBJ3.1 C3XBJ3_OXAFO Two-components system response regulator 308 7e-82 B1G3M9.1 B1G3M9_9BURK Two component transcriptional regulator, F... 307 1e-81 >D8ITV8.1 D8ITV8_HERSS Two component response regulator protein Length = 249 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV Sbjct: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE Sbjct: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 Query: 241 PGKLARKNH 249 PGKLARKNH Sbjct: 241 PGKLARKNH 249 >A6SU98.1 A6SU98_JANMA Two-components system response regulator Length = 238 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 182/250 (72%), Positives = 197/250 (78%), Gaps = 17/250 (6%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG+LTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQGL+ Sbjct: 61 VTLLKEWQRDGMLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGLTR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHA---APVAAYAPALGGEPLHHGTTASTPF 177 +E R A PV A + A D H P+ A + PA+ PL +A T F Sbjct: 121 GQEVTRIASM---PVRAPI-AATDSHHLPQDKVLPASSSQMYPAIASAPL---MSADTQF 173 Query: 178 GQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQL 237 SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQL Sbjct: 174 -------FTASFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQL 226 Query: 238 GVEPGKLARK 247 GVEPGK+A+K Sbjct: 227 GVEPGKIAKK 236 >A4G1H8.1 A4G1H8_HERAR Putative two-component response regulator containing CheY-like receiver Length = 236 Score = 336 bits (861), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 176/247 (71%), Positives = 193/247 (78%), Gaps = 12/247 (4%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEILGDEGHVV TAENAQQARELR A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILGDEGHVVATAENAQQARELRAAAKPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPI+LQKLLKAVQQG+S Sbjct: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPISLQKLLKAVQQGISR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 +E R A PV A + +H H + ++ P G + + T+ Sbjct: 121 GQEVSRVASI---PVRAPI------IHNDTHLSSDRSHQPLAG---ISYPTSTPVSLMSA 168 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 SF+LPLREARDAFERAYFE+HL +E GSMTRVAE+TGLERTHLYRKLKQLGVE Sbjct: 169 DTQFFTTSFELPLREARDAFERAYFEHHLGQEGGSMTRVAEKTGLERTHLYRKLKQLGVE 228 Query: 241 PGKLARK 247 PGK+A+K Sbjct: 229 PGKIAKK 235 >B2U789.1 B2U789_RALPJ Two component transcriptional regulator, Fis family Length = 236 Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 167/240 (69%), Positives = 176/240 (73%), Gaps = 14/240 (5%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEILGDEGHVV AENAQ+ARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILGDEGHVVEVAENAQRAREYRANATPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW GLLTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLL AV+QGLS Sbjct: 61 VTLLKEWASQGLLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLTAVEQGLSR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 S+E R A P AA V G A + P A + G P + F Sbjct: 121 SKEKPRSA----TPAAAPVAGLAGAMPNAAAGTPAALERTDINGVPTRAAESGGMQF--- 173 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 SFD+PLREARD FERAYFEYHL RE GSMTRVAE+TGLERTHLYRKLKQLGVE Sbjct: 174 -------SFDMPLREARDLFERAYFEYHLQREGGSMTRVAEKTGLERTHLYRKLKQLGVE 226 >E5ANC0.1 E5ANC0_BURRH COG: Response regulator containing CheY-like receiver Length = 228 Score = 314 bits (805), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 174/245 (71%), Positives = 180/245 (73%), Gaps = 23/245 (9%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGH V AENAQQARE RQ PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHAVDVAENAQQAREYRQQSTPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLL AV+QGL+H Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLSAVEQGLAH 120 Query: 121 SREA--VRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFG 178 A A P P V GAA A PV ALG TAS Sbjct: 121 GEAAPLATAASNPPMPATQTVAGAA--------ALPV---TDALG--------TASNGVA 161 Query: 179 QVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLG 238 V A ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLG Sbjct: 162 GVPTTA--ISFDIPLRDARDAFERAYFEYHLSRENGSMTRVAEKTGLERTHLYRKLKQLG 219 Query: 239 VEPGK 243 VE GK Sbjct: 220 VELGK 224 >E1T4L8.1 E1T4L8_BURSG Two component transcriptional regulator, Fis family Length = 229 Score = 312 bits (800), Expect = 2e-83, Method: Compositional matrix adjust. Identities = 170/243 (69%), Positives = 182/243 (74%), Gaps = 18/243 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGHVV AENAQQARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHVVEAAENAQQAREFRLRQAPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLLKAV+QGL+ Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLKAVEQGLAR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 AV+P G A L A AA P L + HG+ G + Sbjct: 121 GTAAVQPGG----------AAAKSALPMNSSAVASAAALPMLSAD--GHGS------GVL 162 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 A A+ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 163 AAQTASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVD 222 Query: 241 PGK 243 GK Sbjct: 223 LGK 225 >C3X5B8.1 C3X5B8_OXAFO Two-components system response regulator Length = 233 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 175/253 (69%), Positives = 191/253 (75%), Gaps = 24/253 (9%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEIL DEGHVV TAENAQQARE R A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILSDEGHVVQTAENAQQAREARAAETPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG LTMPVIMMSGHATIDTAVEATRIGA+NFLEKPIALQKLL+AVQQGL+ Sbjct: 61 VTLLKEWQRDGYLTMPVIMMSGHATIDTAVEATRIGAMNFLEKPIALQKLLQAVQQGLAR 120 Query: 121 SREAVRP----AGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTP 176 +E RP +PAP + + G G PV A AP + +ST Sbjct: 121 HQEKNRPIPVTIAQQPAPASELRTGITTG------NVPVQAPAPVINN--------SST- 165 Query: 177 FGQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQ 236 N A +SFDLPLREARD FER YFE+HL +E GSMTRVAE+TGLERTHLYRKLKQ Sbjct: 166 -----INTALLSFDLPLREARDMFERIYFEHHLAQEGGSMTRVAEKTGLERTHLYRKLKQ 220 Query: 237 LGVEPGKLARKNH 249 LGVEP K +K++ Sbjct: 221 LGVEPVKAPKKHN 233 >B5WD15.1 B5WD15_9BURK Two component transcriptional regulator, Fis family Length = 229 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 166/243 (68%), Positives = 179/243 (73%), Gaps = 18/243 (7%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGHVV AENAQ+ARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHVVEAAENAQEAREFRLRQAPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLLKAV+QGL+ Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLKAVEQGLAR 120 Query: 121 SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFGQV 180 AV P G P L + AA P L + + G A+ Sbjct: 121 GNAAVLPGGVATKP----------ALPVSASSVASAAALPMLSADGVSGGALAA------ 164 Query: 181 ADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLGVE 240 A+ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQLGV+ Sbjct: 165 --QTASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQLGVD 222 Query: 241 PGK 243 GK Sbjct: 223 LGK 225 >C3XBJ3.1 C3XBJ3_OXAFO Two-components system response regulator Length = 233 Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 170/250 (68%), Positives = 187/250 (74%), Gaps = 20/250 (8%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MANILVVDDEMGIRELLSEIL DEGHVV TAENAQQARE R A PDLVLLDIWMPDTDG Sbjct: 1 MANILVVDDEMGIRELLSEILSDEGHVVQTAENAQQAREARAAETPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEWQRDG LTMPVIMMSGHATIDTAVEATRIGA+NFLEKPIALQKLL+AVQQGL+ Sbjct: 61 VTLLKEWQRDGNLTMPVIMMSGHATIDTAVEATRIGAMNFLEKPIALQKLLQAVQQGLAR 120 Query: 121 SREAVRPAGYRPAPVAAV--VNGAADGLHTPEHAAPVAAYAPALGGEPLHHGTTASTPFG 178 ++E R P +V V + ++ + AP AST Sbjct: 121 NQEKSRMVATPIMPSVSVTEVRTTSTVINNVQMQAP------------------ASTTGN 162 Query: 179 QVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQLG 238 N + +SFDLPLREARD FER YFE+HL +E GSMTRVAE+TGLERTHLYRKLKQLG Sbjct: 163 TSLINTSLLSFDLPLREARDMFERIYFEHHLAQEGGSMTRVAEKTGLERTHLYRKLKQLG 222 Query: 239 VEPGKLARKN 248 VEP K ++KN Sbjct: 223 VEPVKASKKN 232 >B1G3M9.1 B1G3M9_9BURK Two component transcriptional regulator, Fis family Length = 229 Score = 307 bits (786), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 166/246 (67%), Positives = 184/246 (74%), Gaps = 24/246 (9%) Query: 1 MANILVVDDEMGIRELLSEILGDEGHVVTTAENAQQARELRQAGVPDLVLLDIWMPDTDG 60 MA ILVVDDEMGIRELLSEIL DEGHVV AENAQQARE R PDLVLLDIWMPDTDG Sbjct: 1 MATILVVDDEMGIRELLSEILSDEGHVVEAAENAQQAREFRLRQAPDLVLLDIWMPDTDG 60 Query: 61 VTLLKEWQRDGLLTMPVIMMSGHATIDTAVEATRIGALNFLEKPIALQKLLKAVQQGLSH 120 VTLLKEW G LTMPVIMMSGHATIDTAVEAT+IGALNFLEKPIALQKLLKAV+QGL+ Sbjct: 61 VTLLKEWAAQGQLTMPVIMMSGHATIDTAVEATKIGALNFLEKPIALQKLLKAVEQGLAR 120 Query: 121 -SREAVRPAGYRPAPVAAVVNGAADGLHTPEHAAPVAAYA--PALGGEPLHHGTTASTPF 177 + +P+ P +++ VA+ A P L + HG+ Sbjct: 121 GTAAVAPGGVAAKSPL-------------PMNSSTVASAAALPMLSAD--GHGS------ 159 Query: 178 GQVADNAANISFDLPLREARDAFERAYFEYHLVRENGSMTRVAERTGLERTHLYRKLKQL 237 G +A A+ISFD+PLR+ARDAFERAYFEYHL RENGSMTRVAE+TGLERTHLYRKLKQL Sbjct: 160 GVLAAQTASISFDIPLRDARDAFERAYFEYHLARENGSMTRVAEKTGLERTHLYRKLKQL 219 Query: 238 GVEPGK 243 GV+ GK Sbjct: 220 GVDLGK 225