BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0011.p (91 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B7X3Q6.1 B7X3Q6_COMTE Sigma 54 interacting domain protein 124 6e-27 Q12DH4.1 Q12DH4_POLSJ Regulator of RNA terminal phosphate cyclase 123 8e-27 Q392U0.1 Q392U0_BURS3 Sigma54-dependent transcriptional regulato... 123 1e-26 B1K5J1.1 B1K5J1_BURCC Regulator of RNA terminal phosphate cyclase 123 1e-26 A0AYF6.1 A0AYF6_BURCH Regulator of RNA terminal phosphate cyclase 122 1e-26 B1Z0D5.1 B1Z0D5_BURA4 Regulator of RNA terminal phosphate cyclase 122 1e-26 F0GAU4.1 F0GAU4_9BURK Sigma54-dependent transcriptional regulato... 122 1e-26 B4EM30.1 B4EM30_BURCJ Transcriptional regulator 122 1e-26 A2W0F5.1 A2W0F5_9BURK Sigma-54 factor, interaction region 122 1e-26 Q1BLF6.1 Q1BLF6_BURCA Regulator of RNA terminal phosphate cyclase 122 1e-26 >B7X3Q6.1 B7X3Q6_COMTE Sigma 54 interacting domain protein Length = 536 Score = 124 bits (310), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 60/79 (75%), Positives = 67/79 (84%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+AH+ +LFLDEIGELGLDEQAML KA+EEKRF P+G+D E S QLIAGTHRDL Sbjct: 276 LLRTAHEGVLFLDEIGELGLDEQAMLLKAVEEKRFFPMGSDKEVSSDFQLIAGTHRDLRV 335 Query: 61 EVAAGRFREDLFARIKLWS 79 +VA GRFREDLFARI LWS Sbjct: 336 DVAEGRFREDLFARINLWS 354 >Q12DH4.1 Q12DH4_POLSJ Regulator of RNA terminal phosphate cyclase Length = 531 Score = 123 bits (309), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 61/87 (70%), Positives = 71/87 (81%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A K +LFLDEIGELGLDEQAML KA+EEKRFLP+GAD E +SS QLIAGT++DL Sbjct: 275 LLRTADKGVLFLDEIGELGLDEQAMLLKAVEEKRFLPVGADREVDSSFQLIAGTNKDLRS 334 Query: 61 EVAAGRFREDLFARIKLWSPFIASTGN 87 EV+ GRFREDLFARI LW+ + G Sbjct: 335 EVSHGRFREDLFARINLWTYTMPGLGQ 361 >Q392U0.1 Q392U0_BURS3 Sigma54-dependent transcriptional regulator RtcR Length = 567 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 307 LLRAADSGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 366 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 367 MVAAGTFREDLYARINLWT 385 >B1K5J1.1 B1K5J1_BURCC Regulator of RNA terminal phosphate cyclase Length = 544 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 278 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 337 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 338 MVAAGTFREDLYARINLWT 356 >A0AYF6.1 A0AYF6_BURCH Regulator of RNA terminal phosphate cyclase Length = 538 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 278 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 337 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 338 MVAAGTFREDLYARINLWT 356 >B1Z0D5.1 B1Z0D5_BURA4 Regulator of RNA terminal phosphate cyclase Length = 538 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 278 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 337 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 338 MVAAGTFREDLYARINLWT 356 >F0GAU4.1 F0GAU4_9BURK Sigma54-dependent transcriptional regulator RtcR Length = 538 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 278 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEASSDFELIAGTHRDLRQ 337 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 338 MVAAGTFREDLYARINLWT 356 >B4EM30.1 B4EM30_BURCJ Transcriptional regulator Length = 538 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 278 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 337 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 338 MVAAGTFREDLYARINLWT 356 >A2W0F5.1 A2W0F5_9BURK Sigma-54 factor, interaction region Length = 548 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 288 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 347 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 348 MVAAGTFREDLYARINLWT 366 >Q1BLF6.1 Q1BLF6_BURCA Regulator of RNA terminal phosphate cyclase Length = 604 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 62/79 (78%), Positives = 68/79 (86%) Query: 1 LLRSAHKRLLFLDEIGELGLDEQAMLFKAIEEKRFLPIGADVEAESSCQLIAGTHRDLAR 60 LLR+A LLFLDEIGELGLDEQAML KAIEEKRFLP+GADVEA S +LIAGTHRDL + Sbjct: 344 LLRAADGGLLFLDEIGELGLDEQAMLLKAIEEKRFLPVGADVEATSDFELIAGTHRDLRQ 403 Query: 61 EVAAGRFREDLFARIKLWS 79 VAAG FREDL+ARI LW+ Sbjct: 404 MVAAGTFREDLYARINLWT 422