BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0006.p         (63 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITQ6.1 D8ITQ6_HERSS Transcription regulator protein                 125   2e-27

>D8ITQ6.1 D8ITQ6_HERSS Transcription regulator protein
          Length = 89

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/63 (100%), Positives = 63/63 (100%)

Query: 1  MSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEMELPDLLRHTLLALPKEEHR 60
          MSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEMELPDLLRHTLLALPKEEHR
Sbjct: 27 MSQEELAFRADISRTYLSEVERGERNISVDNMEALAEALEMELPDLLRHTLLALPKEEHR 86

Query: 61 ASD 63
          ASD
Sbjct: 87 ASD 89