BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0032.0002.p (186 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value E6PKB7.1 E6PKB7_9ZZZZ Cyclic nucleotide-binding domain (CNMP-BD)... 184 4e-45 A1VLV3.1 A1VLV3_POLNA Cyclic nucleotide-binding domain (CNMP-BD)... 184 7e-45 Q12H49.1 Q12H49_POLSJ Cyclic nucleotide-binding domain (CNMP-BD)... 179 2e-43 D6CQT3.1 D6CQT3_THIS3 Putative Bacterial regulatory protein, Crp 167 7e-40 C5SZZ2.1 C5SZZ2_ACIDE Putative transcriptional regulator, Crp/Fn... 161 4e-38 D3RSC9.1 D3RSC9_ALLVD Putative transcriptional regulator, Crp/Fn... 154 4e-36 B2J9N2.1 B2J9N2_NOSP7 Cyclic nucleotide-binding protein 153 1e-35 A6WPY5.1 A6WPY5_SHEB8 Putative transcriptional regulator, Crp/Fn... 149 2e-34 B8EED7.1 B8EED7_SHEB2 Transcriptional regulator, Crp/Fnr family 148 3e-34 Q0A9M0.1 Q0A9M0_ALHEH Transcriptional regulator, Crp/Fnr family 148 3e-34 >E6PKB7.1 E6PKB7_9ZZZZ Cyclic nucleotide-binding domain (CNMP-BD) protein Length = 230 Score = 184 bits (468), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 85/184 (46%), Positives = 124/184 (67%) Query: 3 YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62 YFP++G IS+L + P EV MVGREG+ G+ ALG+ +T A V G AW I + Sbjct: 46 YFPVDGFISLLQQIETHPPLEVGMVGREGILGVQLALGVATTPLLAVVQGSGSAWRIEQS 105 Query: 63 AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122 AF+ EL Q+ L+ LNRY+ +++ QL ++ C++FH + RLA+WLLMSQDR+++ F Sbjct: 106 AFQHELLQSPALRQSLNRYVYVLMAQLAASASCLRFHLIDARLARWLLMSQDRAHSDAFH 165 Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLY 182 +T E LA +LGVRRVG+T AA L+ +G+IEY RG + +L+R LE ACSCY + ++Y Sbjct: 166 VTHEFLAHMLGVRRVGVTVAAGDLQRSGLIEYHRGELKVLDRIGLEAAACSCYNRDKEIY 225 Query: 183 TKTL 186 ++ Sbjct: 226 RTSM 229 >A1VLV3.1 A1VLV3_POLNA Cyclic nucleotide-binding domain (CNMP-BD) protein Length = 247 Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 85/185 (45%), Positives = 122/185 (65%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP G IS+++L D TP EV MVGREGM G ALG+ + HA V G AW I+T Sbjct: 45 VYFPTRGYISLVALVDGTPGVEVGMVGREGMLGAQLALGVVTAPLHALVQGSGMAWRIAT 104 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 F+ EL ++ L+ L+RY+ +++ Q ++ C++FH + RLA+WLLMSQDR++ F Sbjct: 105 VPFKRELARSPALRRGLHRYLYVLMVQQATSAACLRFHLIGPRLARWLLMSQDRAHCDSF 164 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 +T E LA +LG+RRVG+TAAA+ L+ +G+I+Y RG + +L+R LE ACSCY + Sbjct: 165 HLTHEFLAYMLGMRRVGVTAAASALQRSGLIQYHRGEIRVLDRSGLEAAACSCYATSQQT 224 Query: 182 YTKTL 186 Y L Sbjct: 225 YNDLL 229 >Q12H49.1 Q12H49_POLSJ Cyclic nucleotide-binding domain (CNMP-BD) protein Length = 237 Score = 179 bits (453), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 82/167 (49%), Positives = 114/167 (68%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP G IS+++L D +P EV MVGREGM G ALG+ ++ HA V PG AW + T Sbjct: 45 VYFPTEGFISLVALLDGSPGVEVGMVGREGMLGAQVALGVVTSPLHALVQGPGAAWRVDT 104 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 AFR EL + LQ LNRY+ +++ Q ++ C++FH + RLA+WLLM+QDR+++ F Sbjct: 105 GAFRKELAASAALQRGLNRYLYVLMAQQAASAACLRFHLIGPRLARWLLMTQDRAHSDSF 164 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLE 168 +TQ LA +LGVRRVG+TAAA L+ +G+IEY RG +L+R LE Sbjct: 165 HVTQAFLAYMLGVRRVGVTAAAGALQRSGLIEYHRGDFRVLDRSGLE 211 >D6CQT3.1 D6CQT3_THIS3 Putative Bacterial regulatory protein, Crp Length = 250 Score = 167 bits (423), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 80/184 (43%), Positives = 117/184 (63%) Query: 3 YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62 YFP+NG +S+L A EV MVGREGM G ALG+ +T A V G AW I + Sbjct: 53 YFPVNGYVSLLQQTGAQAPLEVGMVGREGMLGAELALGVTTTPLLALVRGSGAAWRIEQS 112 Query: 63 AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122 A + L Q+ L+ L+RY+ +++ Q + C +FH + RLA+ LLMSQDR++A F Sbjct: 113 ALQEALAQSLALRQGLHRYVYVLLAQRAAAVSCQRFHLIEARLARQLLMSQDRAHADTFH 172 Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLY 182 +T E LA +LGVRRVG+T AA +L+ +G+I Y RG + ++NR L+ +ACSCY + ++Y Sbjct: 173 VTHEDLAQMLGVRRVGVTVAAGELQRSGLIAYHRGDLRVVNRIALQSRACSCYALDQRIY 232 Query: 183 TKTL 186 ++ Sbjct: 233 DASM 236 >C5SZZ2.1 C5SZZ2_ACIDE Putative transcriptional regulator, Crp/Fnr family Length = 233 Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 75/184 (40%), Positives = 114/184 (61%) Query: 3 YFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSISTA 62 +FP+ G +S++ D+ P EV MVG E M G LGL +T + A V G +W I Sbjct: 46 HFPMEGFLSLVIDVDSHPPLEVGMVGAEAMLGSELILGLAATPWRALVQGAGSSWRIGAR 105 Query: 63 AFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEFS 122 R ++N L+ +L + + + Q C ++H ++ RLA+WLLMSQDRS ++ F Sbjct: 106 ELRAQINAIPALETLLQACLLMRLHQQTLAAACQRYHLIAPRLARWLLMSQDRSRSESFH 165 Query: 123 ITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKLY 182 +TQE +A +LGVRRVG+T AA+ + +G+I Y RG +T+LNRK LE ACSCY+ + ++Y Sbjct: 166 VTQEFMALMLGVRRVGVTEAASHFQDSGLIAYHRGELTVLNRKALEAAACSCYVADKEIY 225 Query: 183 TKTL 186 + + Sbjct: 226 NRLM 229 >D3RSC9.1 D3RSC9_ALLVD Putative transcriptional regulator, Crp/Fnr family Length = 239 Score = 154 bits (390), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/185 (40%), Positives = 108/185 (58%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP + ++S+++ EV +VG EGM G P LG++ T H V G AW +S Sbjct: 53 VYFPTDSVLSLMTPPADHAGLEVRLVGNEGMIGTPLILGVEVTLLHTVVQAAGPAWRMSR 112 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 F L ++ L +L+RY+ +++ Q C +FH + RLA+WLLM+QDR + F Sbjct: 113 EQFGEALLRSDALHTLLDRYLEVLMNQGDLLVVCTRFHLVEARLARWLLMTQDRIHGDRF 172 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 +T E LA LLGVRRVGIT AAT L+ +I Y RG +T+L+R L+ AC CY + Sbjct: 173 HVTHEGLALLLGVRRVGITKAATALQERKLIHYRRGEITVLDRMGLKAAACGCYGRAETM 232 Query: 182 YTKTL 186 Y + L Sbjct: 233 YDRLL 237 >B2J9N2.1 B2J9N2_NOSP7 Cyclic nucleotide-binding protein Length = 243 Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 76/174 (43%), Positives = 101/174 (58%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP N ++SI++ EV +V EGM GIP LG +T A V G I Sbjct: 50 VYFPQNAVVSIVTGMKDGSTVEVGIVSNEGMVGIPVILGGSTTTTKAFVQVAGSGVQIDA 109 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 RTE N+ +Q +L RYI +L C C + HTL ERLA+WLL DR ++EF Sbjct: 110 DVLRTEFNRGGAIQNLLLRYIRATYTELTQGCACNRLHTLEERLARWLLTVSDRLESEEF 169 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175 +TQE +A +LGVRR G+T AA+ L G+I Y RG + ILNR+ LE+ +C CY Sbjct: 170 PLTQEFIAQMLGVRRSGVTVAASALSRAGMISYQRGQINILNREDLEETSCECY 223 >A6WPY5.1 A6WPY5_SHEB8 Putative transcriptional regulator, Crp/Fnr family Length = 232 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 69/174 (39%), Positives = 112/174 (64%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFPI+ ++S+L++ + + E+S+VG EG+ GI +G +S A V GRA+ +S Sbjct: 46 VYFPIDSIVSLLNVLEDGSSAEISVVGNEGLVGIAVFMGGESAPNRAIVQSAGRAYKLSA 105 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 + E N N+ L+++L RY ++ Q+ T C + H++ ++L +WLL+S DR + Sbjct: 106 SVLLNEFNDNQSLRVLLLRYTQALMAQMAQTAICNRHHSIDQQLCRWLLLSLDRLASNNL 165 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175 ++TQE +A++LGVRR GIT AA +L+ G+I Y RGH+T+ NR+ LE C CY Sbjct: 166 TMTQELIANMLGVRREGITEAAGKLQKLGVINYKRGHITVTNREKLETLCCECY 219 >B8EED7.1 B8EED7_SHEB2 Transcriptional regulator, Crp/Fnr family Length = 232 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 68/174 (39%), Positives = 112/174 (64%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFPI+ ++S+L++ + + E+S+VG EG+ GI +G +S A V GRA+ +S Sbjct: 46 VYFPIDSIVSLLNVLEDGSSAEISVVGNEGLVGIAVFMGGESAPNRAIVQSAGRAYKLSA 105 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 + E N N+ L+++L RY ++ Q+ T C + H++ ++L +WLL+S DR + Sbjct: 106 SVLLNEFNDNQSLRVLLLRYTQALMAQMAQTAICNRHHSIDQQLCRWLLLSLDRLASNNL 165 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCY 175 ++TQE +A++LGVRR G+T AA +L+ G+I Y RGH+T+ NR+ LE C CY Sbjct: 166 TMTQELIANMLGVRREGVTEAAGKLQKLGVINYKRGHITVTNREKLETLCCECY 219 >Q0A9M0.1 Q0A9M0_ALHEH Transcriptional regulator, Crp/Fnr family Length = 250 Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 70/185 (37%), Positives = 115/185 (62%) Query: 2 IYFPINGLISILSLGDATPNFEVSMVGREGMYGIPFALGLKSTEFHASVLYPGRAWSIST 61 +YFP++ ++S+L L + + E S+VG EG+ G+ +G ++T A V G A+ ++ Sbjct: 49 VYFPVDCIVSLLCLMEDGSSAETSVVGNEGIVGVSLFMGGETTPSQAVVQAAGHAYRLTG 108 Query: 62 AAFRTELNQNKGLQLVLNRYINIVIEQLYSTCRCIKFHTLSERLAKWLLMSQDRSNAQEF 121 A + E ++ +Q +L RY ++ Q+ T C + HTL ++L +WLL+SQDR + E Sbjct: 109 RALKAEFHRGGPMQHLLLRYTQALLTQMAQTAVCNRHHTLDQQLCRWLLLSQDRLQSTEL 168 Query: 122 SITQETLASLLGVRRVGITAAATQLRSNGIIEYSRGHVTILNRKHLEKQACSCYIDETKL 181 +TQE +A++LGVRR G+T AA L+ G+I Y RGH++IL+R LE++ C CY + Sbjct: 169 IMTQELIANMLGVRREGVTEAANNLKKAGLISYHRGHISILDRAGLERRVCECYEVVRRE 228 Query: 182 YTKTL 186 Y + L Sbjct: 229 YARLL 233