BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0031.0238.p         (158 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IUG0.1 D8IUG0_HERSS Putative uncharacterized protein                314   3e-84
Q4FTD3.1 Q4FTD3_PSYA2 Probable OmpA/MotB                              186   9e-46
D0SUD2.1 D0SUD2_ACILW OmpA/MotB                                       161   3e-38
E2XYC5.1 E2XYC5_PSEFL Chemotaxis MotB protein                         154   5e-36
Q13V05.1 Q13V05_BURXL Outer membrane protein, OmpA/MotB family        152   1e-35

>D8IUG0.1 D8IUG0_HERSS Putative uncharacterized protein
          Length = 161

 Score =  314 bits (804), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 157/158 (99%), Positives = 157/158 (99%)

Query: 1   VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60
           VLRQVQTVFAQQGAASLVAVDTEAGKITL EGAFRRGSACVESEAKAAFAQVEERIAEYL
Sbjct: 4   VLRQVQTVFAQQGAASLVAVDTEAGKITLKEGAFRRGSACVESEAKAAFAQVEERIAEYL 63

Query: 61  QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120
           QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA
Sbjct: 64  QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 123

Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP 158
           RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP
Sbjct: 124 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP 161


>Q4FTD3.1 Q4FTD3_PSYA2 Probable OmpA/MotB
          Length = 211

 Score =  186 bits (472), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 85/151 (56%), Positives = 109/151 (72%)

Query: 1   VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60
           +L  +QT  A QGA +L+  + E  KITL +  F RGSAC+  EAK AF  +E++I  +L
Sbjct: 58  LLEDIQTSVATQGAGNLIDFNMEQSKITLKDNVFARGSACITPEAKTAFNNIEDKITSFL 117

Query: 61  QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120
           QQ+   +I+VEGHTD+ PV  PVTD R FCTVYDDN TLSAARAR+AR LLVG+     A
Sbjct: 118 QQSSNAKIFVEGHTDNIPVSQPVTDYRRFCTVYDDNYTLSAARAREARKLLVGQLDTSIA 177

Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRF 151
           +R++VAGYGDSQP+ G++  D+ NRRVEVR 
Sbjct: 178 KRIVVAGYGDSQPIKGISPEDDANRRVEVRL 208


>D0SUD2.1 D0SUD2_ACILW OmpA/MotB
          Length = 215

 Score =  161 bits (408), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 74/151 (49%), Positives = 101/151 (66%)

Query: 1   VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60
           +L  ++    + GA++L++ D   GKITL E  F  GSAC+   A   F  +++RI  +L
Sbjct: 58  MLTDLKNSVDETGASNLISFDIADGKITLKENIFNVGSACITPSAAKTFKSLDQRIVSFL 117

Query: 61  QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120
           ++NP   ++VEGHTD+  VK PV D +  CTVYDDN TLSAARAR+AR L++       A
Sbjct: 118 KENPKASVFVEGHTDNSIVKQPVLDFKEKCTVYDDNFTLSAARAREARKLIISSLDANEA 177

Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRF 151
            RV+VAGYGDS+PL G+  SD RNRRVE++F
Sbjct: 178 NRVVVAGYGDSRPLNGIDPSDGRNRRVEIQF 208


>E2XYC5.1 E2XYC5_PSEFL Chemotaxis MotB protein
          Length = 229

 Score =  154 bits (388), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 76/158 (48%), Positives = 103/158 (65%)

Query: 1   VLRQVQTVFAQQGAASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIAEYL 60
           +L  +Q+   + G   LV +D +  ++TL + AF RGSAC+   A+ A   +  R+A ++
Sbjct: 69  LLAAMQSDLQRTGETDLVDIDIQNRRLTLPDNAFARGSACITPAAQGALTLLSARVATFI 128

Query: 61  QQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSPEAA 120
           +    G++ VEGHTD+ PV  PVTD   FCTVYDDN TLSAARAR+AR LL+    P+ A
Sbjct: 129 KDYGQGQVLVEGHTDNLPVSRPVTDYERFCTVYDDNYTLSAARAREARKLLIQAIEPQQA 188

Query: 121 RRVIVAGYGDSQPLPGLAASDERNRRVEVRFVSGAQKP 158
           RRV+VAGYGDS+P PG+  +   NRRVEV+ V   Q P
Sbjct: 189 RRVVVAGYGDSRPKPGIDPASALNRRVEVQLVVATQPP 226


>Q13V05.1 Q13V05_BURXL Outer membrane protein, OmpA/MotB family
          Length = 212

 Score =  152 bits (384), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/155 (52%), Positives = 112/155 (72%), Gaps = 3/155 (1%)

Query: 1   VLRQVQTVFAQQG---AASLVAVDTEAGKITLMEGAFRRGSACVESEAKAAFAQVEERIA 57
           V R +QT+ A+ G   A+ L+ +D    ++TL +G F RGSAC+  EA+AA   V+  +A
Sbjct: 55  VARMMQTLGAKLGNGEASGLMTLDRSTNRLTLRDGVFERGSACLTPEARAAIGAVQGELA 114

Query: 58  EYLQQNPAGRIYVEGHTDDKPVKAPVTDVRAFCTVYDDNITLSAARARQARLLLVGRSSP 117
            ++  NP  R+ VEG+TD+ PV  PV D + FCTVYDDN TLSAARAR+AR  L+G  S 
Sbjct: 115 HFIADNPKARMLVEGYTDNLPVTRPVIDYQRFCTVYDDNFTLSAARAREARRALLGTISD 174

Query: 118 EAARRVIVAGYGDSQPLPGLAASDERNRRVEVRFV 152
           +AA+R++VAGYG+S+PLPG+ A+D RNRRVEV+F+
Sbjct: 175 DAAKRIVVAGYGESRPLPGVDAADPRNRRVEVQFL 209