BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0233.p (170 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5JXM5.1 B5JXM5_9GAMM Capsular polysaccharide biosynthesis prote... 195 2e-48 E8UC07.1 E8UC07_DEIML NAD-dependent epimerase/dehydratase 194 3e-48 F0RPY8.1 F0RPY8_DEIPM NAD-dependent epimerase/dehydratase 194 4e-48 Q0EZA0.1 Q0EZA0_9PROT Capsular polysaccharide synthesis enzyme CapF 194 4e-48 Q1NU85.1 Q1NU85_9DELT NAD-dependent epimerase/dehydratase:3-beta... 182 1e-44 A3TY41.1 A3TY41_9RHOB Capsular polysaccharide synthesis enzyme CapF 181 2e-44 D7A827.1 D7A827_STAND NAD-dependent epimerase/dehydratase 176 8e-43 C8RWW1.1 C8RWW1_9RHOB NAD-dependent epimerase/dehydratase 174 3e-42 C7PLX2.1 C7PLX2_CHIPD NAD-dependent epimerase/dehydratase 169 1e-40 D1N7C3.1 D1N7C3_9BACT NAD-dependent epimerase/dehydratase 164 4e-39 >B5JXM5.1 B5JXM5_9GAMM Capsular polysaccharide biosynthesis protein Cap5F Length = 370 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 95/162 (58%), Positives = 116/162 (71%), Gaps = 4/162 (2%) Query: 3 VSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGELF 62 V+ LE + A +V +PDL E L+LFNTLRS+LYP YP L L+ D RG LF Sbjct: 206 VAGKLESMHASYTNHV----MPDLREGFDLQLFNTLRSFLYPAHYPVALKLNTDNRGSLF 261 Query: 63 EAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEVSG 122 EAVKAD GGQ FLSTT PG TRGNH+H K+ERFLVI G IR+R+LF D++ F VSG Sbjct: 262 EAVKADNGGQAFLSTTKPGITRGNHFHFGKVERFLVIRGEAVIRLRRLFDDEVTEFRVSG 321 Query: 123 DRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTY 164 P Y+D+PTLHTH+ITN G+ + T+FWS+EIFDP +PDTY Sbjct: 322 SEPVYVDMPTLHTHNITNVGDEELMTMFWSHEIFDPENPDTY 363 >E8UC07.1 E8UC07_DEIML NAD-dependent epimerase/dehydratase Length = 369 Score = 194 bits (494), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 95/168 (56%), Positives = 114/168 (67%), Gaps = 1/168 (0%) Query: 1 MRVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGE 60 + V LL L+ Y +PD+ + LFNT RSYLYP YP L LH DARG Sbjct: 200 LTVGDLLARLQQFHSLYAAH-IIPDVRQDFDRDLFNTYRSYLYPQRYPVALTLHTDARGS 258 Query: 61 LFEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEV 120 LFEA+K+ GGQ FLSTT PG TRGNH+H RKIERFLV G I++R + ++ TF V Sbjct: 259 LFEAIKSPNGGQAFLSTTHPGITRGNHYHTRKIERFLVTGGEAEIKLRHVTRAEVQTFRV 318 Query: 121 SGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAV 168 GD P YIDIPTLHTH+ITN G G++ TLFW++E+FDP HPDTYPE V Sbjct: 319 RGDTPVYIDIPTLHTHNITNVGSGVLTTLFWTHELFDPQHPDTYPELV 366 >F0RPY8.1 F0RPY8_DEIPM NAD-dependent epimerase/dehydratase Length = 368 Score = 194 bits (493), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 92/168 (54%), Positives = 117/168 (69%), Gaps = 1/168 (0%) Query: 1 MRVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGE 60 + V LLE L+ +R Y E +PD+ + LFN RSYLYP YP L LH D RG Sbjct: 199 LTVRGLLETLQEMRRTYAEH-IIPDISDPFRRDLFNMYRSYLYPQHYPVALKLHTDLRGS 257 Query: 61 LFEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEV 120 LFEA+K+ GGQ F+STT PG TRGNH+H RK+ERFLV G IR+R +F D++ F V Sbjct: 258 LFEAIKSPSGGQTFMSTTHPGITRGNHFHTRKVERFLVSGGEAEIRLRHIFGDEVQVFRV 317 Query: 121 SGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAV 168 SGD+P+Y+DIPTLHTH+ITN G+ + T+FW+NE+FDPA+PD E V Sbjct: 318 SGDQPSYVDIPTLHTHNITNVGDSTLLTMFWTNELFDPANPDQVMEMV 365 >Q0EZA0.1 Q0EZA0_9PROT Capsular polysaccharide synthesis enzyme CapF Length = 369 Score = 194 bits (492), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 95/168 (56%), Positives = 117/168 (69%), Gaps = 1/168 (0%) Query: 1 MRVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGE 60 M+VS LL L+ + Y E +PD+ E RLFNT RSYL+P YP L +H+DARG Sbjct: 203 MKVSELLARLQKIAGDYREH-ILPDMSETTDFRLFNTYRSYLFPTHYPVTLKMHEDARGA 261 Query: 61 LFEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEV 120 L E VK GGQ F STT G TRGNH+H K+ERFLV+ G TIR+R++FS I TF+V Sbjct: 262 LTEVVKTRHGGQCFFSTTKAGITRGNHYHTGKVERFLVVKGRATIRLRRMFSSQIHTFDV 321 Query: 121 SGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAV 168 G P YIDIPT +TH+ITNTG+ + T+FWS+EIFDPAHPDT+ E V Sbjct: 322 DGGLPQYIDIPTCYTHNITNTGDEELVTIFWSHEIFDPAHPDTFMEVV 369 >Q1NU85.1 Q1NU85_9DELT NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase Length = 378 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 91/170 (53%), Positives = 114/170 (67%), Gaps = 1/170 (0%) Query: 1 MRVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGE 60 +RV LLE + H + PDL + L LFN+ R+ LYP +PRPL ++ D RG Sbjct: 205 VRVPDLLERIETF-HAGWQANIYPDLTDPFDLALFNSYRAALYPDGFPRPLQVNADPRGT 263 Query: 61 LFEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEV 120 LFEAVK GGQ FLS T PG TRG+H+HLRK+ERFLV+ G IR+R + D+ + V Sbjct: 264 LFEAVKGGCGGQTFLSWTKPGVTRGDHFHLRKVERFLVLEGEAVIRMRPVLGQDVWEYRV 323 Query: 121 SGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAVLS 170 SGD PA +D+PTLHTHSI N GE + TLFWS+E+FDP HPDTY + VL Sbjct: 324 SGDAPAAVDMPTLHTHSIENIGERPLLTLFWSHELFDPEHPDTYADPVLG 373 >A3TY41.1 A3TY41_9RHOB Capsular polysaccharide synthesis enzyme CapF Length = 374 Score = 181 bits (460), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 89/170 (52%), Positives = 117/170 (68%), Gaps = 1/170 (0%) Query: 1 MRVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGE 60 + V L L+A Y PDL + L LFN+ R+ YP +PRPL L+ DARG Sbjct: 206 ITVPDLYARLQAFHDSYTAN-IYPDLSDPFDLALFNSYRAASYPDQWPRPLRLNTDARGT 264 Query: 61 LFEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEV 120 LFEAVK GGQ FLSTT PG TRG+H+HL K+ERFLV+ G IRIRK+ +D++ + V Sbjct: 265 LFEAVKGGGGGQTFLSTTKPGITRGDHFHLGKVERFLVVQGEAVIRIRKVLTDEVWEYRV 324 Query: 121 SGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAVLS 170 SGD PA +D+PTLHTHSI N G+ + TLFW++++FDPA+PDT+ + VL+ Sbjct: 325 SGDSPAPVDMPTLHTHSIENVGDSDLLTLFWTHDLFDPANPDTFADKVLT 374 >D7A827.1 D7A827_STAND NAD-dependent epimerase/dehydratase Length = 379 Score = 176 bits (447), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 89/170 (52%), Positives = 108/170 (63%), Gaps = 1/170 (0%) Query: 1 MRVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGE 60 M V LL ++ Y G PDL + L LFN+ R+ LYP +PR L L+ DARG Sbjct: 211 MGVQELLSRIQTFHAAYT-AGVFPDLADPFDLALFNSYRAALYPDFFPRSLKLNSDARGV 269 Query: 61 LFEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEV 120 LFEAVK GGQ FLS T PG TRGNH+HL K+ERFLV+ G IRIR+ + + V Sbjct: 270 LFEAVKGGGGGQTFLSWTEPGVTRGNHFHLDKVERFLVLEGEAVIRIRRALGGPVWEYRV 329 Query: 121 SGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAVLS 170 SG PA +D+PTLHTHSI N G+ + TLFW+ IFDPA PDTY + VL Sbjct: 330 SGAAPAAVDMPTLHTHSIENVGDKPLLTLFWTQAIFDPAAPDTYADPVLG 379 >C8RWW1.1 C8RWW1_9RHOB NAD-dependent epimerase/dehydratase Length = 374 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/164 (51%), Positives = 111/164 (67%) Query: 7 LEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYLYPVLYPRPLVLHKDARGELFEAVK 66 L D+ + HR PDL + L LFN+ R+ LYP +PRPL L+ D RG LFEAVK Sbjct: 210 LLDMLSGFHRDYRANIFPDLGDPFDLALFNSYRAALYPSGFPRPLSLNTDPRGTLFEAVK 269 Query: 67 ADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEVSGDRPA 126 GGQ FLS T PG TRG+H+HL K+ERFLV+ G IRIR++ + + VSGD PA Sbjct: 270 GGGGGQTFLSWTKPGVTRGDHFHLNKVERFLVLEGEAVIRIRRVLHAPVWEYRVSGDTPA 329 Query: 127 YIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAVLS 170 +D+PTLHTH+ITN G+ + TLFW++++FDPA PDTY + V+ Sbjct: 330 PVDMPTLHTHNITNVGDKPLLTLFWTHDLFDPAAPDTYADPVVK 373 >C7PLX2.1 C7PLX2_CHIPD NAD-dependent epimerase/dehydratase Length = 372 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 82/167 (49%), Positives = 108/167 (64%), Gaps = 1/167 (0%) Query: 3 VSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYL-YPVLYPRPLVLHKDARGEL 61 VS +LE L + R Y+E+G P L + ++LFNT RS++ + +P L H D RG Sbjct: 206 VSEILEKLESYRDLYLEEGIFPALPDKFSIQLFNTFRSFIDHASYFPYKLKQHADNRGVF 265 Query: 62 FEAVKADQGGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFEVS 121 E VK QGGQ+ STTVP TRGNH+H RKIERFLVI G I +R+ +D +L+FE+ Sbjct: 266 VEMVKLQQGGQVSFSTTVPEITRGNHFHTRKIERFLVIKGKALIELRQYNTDKVLSFELD 325 Query: 122 GDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPEAV 168 GD P+Y+D+P +TH+I N G + T+FW NE FDP PDTY E V Sbjct: 326 GDTPSYVDMPVWYTHNIKNIGAEELYTVFWINEFFDPQDPDTYFEVV 372 >D1N7C3.1 D1N7C3_9BACT NAD-dependent epimerase/dehydratase Length = 372 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/167 (47%), Positives = 107/167 (64%), Gaps = 2/167 (1%) Query: 2 RVSTLLEDLRALRHRYVEQGAVPDLDEHVHLRLFNTLRSYL-YPVLYPRPLVLHKDARGE 60 +VS LL R + Y EQG +P+L + ++LFNT YL Y YP L + DARG Sbjct: 204 KVSELLATFRRFKELYFEQGILPELRDRFEVQLFNTFCGYLDYKTFYPFSLKNNTDARGT 263 Query: 61 LFEAVKADQ-GGQIFLSTTVPGATRGNHWHLRKIERFLVISGSGTIRIRKLFSDDILTFE 119 E VK D GGQ+ STTVPG TRGNH+H RKIERF VI G I +R++ + + + FE Sbjct: 264 FVELVKLDHLGGQVSFSTTVPGVTRGNHYHTRKIERFAVIRGKARIELRRIGTTEKMVFE 323 Query: 120 VSGDRPAYIDIPTLHTHSITNTGEGLMQTLFWSNEIFDPAHPDTYPE 166 + GD PA++D+P HTH+ITN G+ + T+FW NE ++P PDT+ E Sbjct: 324 LDGDHPAFVDMPVWHTHNITNIGDDELYTVFWINEFYNPEDPDTFFE 370