BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0220.p (127 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2WB47.1 Q2WB47_MAGSA dTDP-4-dehydrorhamnose 3,5-epimerase and r... 174 4e-42 Q1YPS3.1 Q1YPS3_9GAMM DTDP-4-dehydrorhamnose epimerase 151 3e-35 E1X3V0.1 E1X3V0_BACMS dTDP-D-glucose 4,6-dehydratase 145 2e-33 B6BQZ0.1 B6BQZ0_9RICK Polysaccharide biosynthesis domain protein 142 2e-32 Q72FY9.1 Q72FY9_DESVH Polysaccharide biosynthesis domain protein 135 2e-30 E3ILQ0.1 E3ILQ0_DESVR Polysaccharide biosynthesis domain-contain... 135 2e-30 A1VHI2.1 A1VHI2_DESVV Polysaccharide biosynthesis domain protein 135 2e-30 B8DPY9.1 B8DPY9_DESVM Polysaccharide biosynthesis domain-contain... 131 3e-29 Q12VL8.1 Q12VL8_METBU dTDP-4-dehydrorhamnose 3,5-epimerase relat... 130 5e-29 D9YHD8.1 D9YHD8_9DELT Polysaccharide biosynthesis domain protein 129 1e-28 >Q2WB47.1 Q2WB47_MAGSA dTDP-4-dehydrorhamnose 3,5-epimerase and related enzyme Length = 169 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 80/126 (63%), Positives = 94/126 (74%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLRADA HF FGE+YF+ YPG IK WH+HTK NY G IK V YDDR +SPTKG Sbjct: 43 MLRADAPHFDKFGEVYFATAYPGVIKAWHLHTKQAQNYCCIQGMIKLVCYDDRADSPTKG 102 Query: 61 EVQEIFMGPDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIPY 120 +QEI MG NY V +PPL+ NG+K IGT+ AL+ANCA + HDPTE+ R DPFDP+IPY Sbjct: 103 VLQEIVMGDLNYVLVQIPPLLINGWKCIGTQTALLANCADMPHDPTEMKRIDPFDPAIPY 162 Query: 121 DWAIKH 126 DWA+KH Sbjct: 163 DWALKH 168 >Q1YPS3.1 Q1YPS3_9GAMM DTDP-4-dehydrorhamnose epimerase Length = 152 Score = 151 bits (381), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 69/126 (54%), Positives = 82/126 (65%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLR D HF+ FGEIYFS +P +K WH H++M LNYA G +K VLYD R +S T G Sbjct: 26 MLREDDDHFEKFGEIYFSCTFPDVVKAWHKHSEMKLNYACVSGSVKVVLYDTRESSETFG 85 Query: 61 EVQEIFMGPDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIPY 120 E + P+NY +TVPP+VWNGFK IGT+MA VANCA+I H EI R I Y Sbjct: 86 RFNEFILSPENYYLLTVPPMVWNGFKAIGTQMATVANCATIAHRSNEITRLSYDASEINY 145 Query: 121 DWAIKH 126 DW IKH Sbjct: 146 DWNIKH 151 >E1X3V0.1 E1X3V0_BACMS dTDP-D-glucose 4,6-dehydratase Length = 145 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 70/122 (57%), Positives = 80/122 (65%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLR+DA HF FGE+YFS V G IK WH H +M +NYAVP G I FVLYD R S T G Sbjct: 23 MLRSDAEHFSKFGEVYFSFVNNGVIKAWHYHKEMTINYAVPVGKIDFVLYDSREESSTFG 82 Query: 61 EVQEIFMGPDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIPY 120 E Q I M P++Y VTVPP VWNGFKG+ TE A+V NC I H EI+R D IP+ Sbjct: 83 ETQVITMSPEDYFLVTVPPRVWNGFKGLSTEPAMVVNCTDIPHRGDEIERLDFNTDKIPF 142 Query: 121 DW 122 W Sbjct: 143 KW 144 >B6BQZ0.1 B6BQZ0_9RICK Polysaccharide biosynthesis domain protein Length = 149 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 62/125 (49%), Positives = 83/125 (66%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 M+R D +F FGEIYFS +P +K WH+H +M +NY G IK VL+DDRP S TKG Sbjct: 23 MMRNDDPNFTKFGEIYFSYSHPNTVKAWHLHKRMTVNYVCVIGKIKLVLFDDRPESSTKG 82 Query: 61 EVQEIFMGPDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIPY 120 E+QEIF+ +NY VTVP VWNGFK + + +++ANC+ I H+ E+ R+ DP Y Sbjct: 83 ELQEIFLTTENYSLVTVPARVWNGFKSVENKFSIIANCSDIPHEAEEMSRKPFDDPYFNY 142 Query: 121 DWAIK 125 +W IK Sbjct: 143 NWNIK 147 >Q72FY9.1 Q72FY9_DESVH Polysaccharide biosynthesis domain protein Length = 147 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/123 (52%), Positives = 81/123 (65%), Gaps = 1/123 (0%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLR DA F GFGE+YFS V PGA+K W HT+ ++AVP G +K V+YDDR SPT+G Sbjct: 25 MLRPDAPLFMGFGELYFSEVLPGAVKAWKRHTRQTQHFAVPVGRLKVVVYDDREGSPTRG 84 Query: 61 EVQEIFMG-PDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIP 119 V+E +G PD Y + +PPLVW GF +G AL+ NCA I HDP E +R+D IP Sbjct: 85 RVEEHILGRPDAYRLLRIPPLVWYGFTAVGDVPALICNCADIPHDPQEGERKDRDSADIP 144 Query: 120 YDW 122 Y W Sbjct: 145 YHW 147 >E3ILQ0.1 E3ILQ0_DESVR Polysaccharide biosynthesis domain-containing protein Length = 147 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/123 (52%), Positives = 81/123 (65%), Gaps = 1/123 (0%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLR DA F GFGE+YFS V PGA+K W HT+ ++AVP G +K V+YDDR SPT+G Sbjct: 25 MLRPDAPLFMGFGELYFSEVLPGAVKAWKRHTRQTQHFAVPVGRLKVVVYDDREGSPTRG 84 Query: 61 EVQEIFMG-PDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIP 119 V+E +G PD Y + +PPLVW GF +G AL+ NCA I HDP E +R+D IP Sbjct: 85 RVEEHILGRPDAYRLLRIPPLVWYGFTAVGDVPALICNCADIPHDPQEGERKDRDSADIP 144 Query: 120 YDW 122 Y W Sbjct: 145 YHW 147 >A1VHI2.1 A1VHI2_DESVV Polysaccharide biosynthesis domain protein Length = 147 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/123 (52%), Positives = 81/123 (65%), Gaps = 1/123 (0%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLR DA F GFGE+YFS V PGA+K W HT+ ++AVP G +K V+YDDR SPT+G Sbjct: 25 MLRPDAPLFMGFGELYFSEVLPGAVKAWKRHTRQTQHFAVPVGRLKVVVYDDREGSPTRG 84 Query: 61 EVQEIFMG-PDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIP 119 V+E +G PD Y + +PPLVW GF +G AL+ NCA I HDP E +R+D IP Sbjct: 85 RVEEHILGRPDAYRLLRIPPLVWYGFTAVGDVPALICNCADIPHDPQEGERKDRDSADIP 144 Query: 120 YDW 122 Y W Sbjct: 145 YHW 147 >B8DPY9.1 B8DPY9_DESVM Polysaccharide biosynthesis domain-containing protein Length = 149 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 62/123 (50%), Positives = 79/123 (64%), Gaps = 1/123 (0%) Query: 1 MLRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKG 60 MLR D+ F FGE+YFS V PGA+K W HT+ ++AVP G +K V++D RP SPT G Sbjct: 27 MLRPDSPMFTSFGELYFSEVEPGAVKAWKRHTRQTQHFAVPVGRMKVVIHDSRPGSPTFG 86 Query: 61 EVQEIFMG-PDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIP 119 +E +G PD+Y + +PPLVW GF +G AL+ NCA I HDPTE +R P IP Sbjct: 87 VTEEFLLGRPDDYRLLRIPPLVWYGFTAVGETPALICNCADIPHDPTESERAPRDAPEIP 146 Query: 120 YDW 122 Y W Sbjct: 147 YRW 149 >Q12VL8.1 Q12VL8_METBU dTDP-4-dehydrorhamnose 3,5-epimerase related protein Length = 145 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 60/122 (49%), Positives = 78/122 (63%) Query: 2 LRADAAHFQGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNSPTKGE 61 L+A+ + GFGE YFS V GAIK W H +M LN VP G I FVLYDDR S T+G+ Sbjct: 24 LKAEDDSYHGFGEAYFSTVNCGAIKAWKRHHEMTLNIVVPQGEIMFVLYDDRLESNTRGQ 83 Query: 62 VQEIFMGPDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFDPSIPYD 121 + EI + +NY +T+PP+VW GFKG+G + ++ N A+I HDP E D D +I YD Sbjct: 84 IMEIKLSTENYQRLTIPPMVWMGFKGMGKDANILINIANIQHDPNESDHLDSHKNNINYD 143 Query: 122 WA 123 W Sbjct: 144 WG 145 >D9YHD8.1 D9YHD8_9DELT Polysaccharide biosynthesis domain protein Length = 159 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/127 (50%), Positives = 83/127 (65%), Gaps = 5/127 (3%) Query: 1 MLRADAAHF----QGFGEIYFSAVYPGAIKGWHIHTKMVLNYAVPHGHIKFVLYDDRPNS 56 MLR D+ GFGEIYFS V PGA+K W H++ +AVPHG ++ VLYDDRP S Sbjct: 24 MLRPDSPLLPDFAAGFGEIYFSEVLPGAVKAWKRHSRQTQLFAVPHGLLRIVLYDDRPGS 83 Query: 57 PTKGEVQEIFMG-PDNYCCVTVPPLVWNGFKGIGTEMALVANCASIGHDPTEIDRRDPFD 115 T+G + E+ +G P++Y + +P VW GF +G E AL+ NCA I HDPTE +RR D Sbjct: 84 STQGVLCELALGRPEHYGLLRIPTGVWYGFAAMGGEAALICNCADIPHDPTEGERRPADD 143 Query: 116 PSIPYDW 122 P+IPY W Sbjct: 144 PAIPYSW 150