BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0031.0044.p (312 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISQ8.1 D8ISQ8_HERSS IclR family transcription regulator protein 521 e-146 B9TEJ5.1 B9TEJ5_RICCO Pca regulon regulatory protein, putative 384 e-104 D1RRS4.1 D1RRS4_SEROD Transcriptional regulatory protein 293 2e-77 B9Z065.1 B9Z065_9NEIS Transcriptional regulator, IclR family 292 5e-77 C1DSM2.1 C1DSM2_AZOVD Transcriptional regulator PcaR 288 7e-76 A8GES5.1 A8GES5_SERP5 Transcriptional regulator, IclR family 288 8e-76 Q02US3.1 Q02US3_PSEAB Transcriptional regulator PcaR 288 8e-76 Q9I6X7.1 Q9I6X7_PSEAE Transcriptional regulator PcaR 288 8e-76 B7V272.1 B7V272_PSEA8 Transcriptional regulator PcaR 288 8e-76 E3A6W1.1 E3A6W1_PSEAE Transcriptional regulator PcaR 288 8e-76 >D8ISQ8.1 D8ISQ8_HERSS IclR family transcription regulator protein Length = 260 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 259/260 (99%), Positives = 260/260 (100%) Query: 53 LTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 112 +TIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK Sbjct: 1 MTIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLK 60 Query: 113 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 172 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV Sbjct: 61 QLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEV 120 Query: 173 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV 232 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV Sbjct: 121 LYVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVV 180 Query: 233 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 292 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM Sbjct: 181 SQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQM 240 Query: 293 EEEILPVLLRGAQELSVLLP 312 EEEILPVLLRGAQELSVLLP Sbjct: 241 EEEILPVLLRGAQELSVLLP 260 >B9TEJ5.1 B9TEJ5_RICCO Pca regulon regulatory protein, putative Length = 271 Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust. Identities = 189/259 (72%), Positives = 223/259 (86%) Query: 54 TIAQEIDALTDPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQ 113 TIA+EIDAL DP FMTSLARGLAV+RAF+D+R+ TIAQISQ+TGIPRAAVRRCLHTL+Q Sbjct: 13 TIAEEIDALADPDFMTSLARGLAVLRAFADTRKPQTIAQISQQTGIPRAAVRRCLHTLRQ 72 Query: 114 LGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVL 173 LGY D+++NNFSLRPK+LTLGYSYLSSTPLT +AQP LN +S+ LGES SLAVL++ +VL Sbjct: 73 LGYVDAELNNFSLRPKVLTLGYSYLSSTPLTAAAQPCLNGVSKALGESSSLAVLEEDQVL 132 Query: 174 YVARSAASRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVS 233 YVAR+A SRVMSV+L GSRLPAYC+SLGR +LAHLP+D+L AY + L +TE+TV Sbjct: 133 YVARAATSRVMSVSLAAGSRLPAYCSSLGRVLLAHLPQDELDAYLARTTLTPMTERTVTD 192 Query: 234 QKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQME 293 RLRDILA VR +GYAV +EELE+GLRSIAVPVRGASG VLAALNVGA AARV+ +M Sbjct: 193 PARLRDILAQVRRDGYAVNNEELELGLRSIAVPVRGASGRVLAALNVGAHAARVTPERMV 252 Query: 294 EEILPVLLRGAQELSVLLP 312 EE LPVL +GAQEL++LLP Sbjct: 253 EEFLPVLRQGAQELAMLLP 271 >D1RRS4.1 D1RRS4_SEROD Transcriptional regulatory protein Length = 277 Score = 293 bits (750), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 142/248 (57%), Positives = 189/248 (76%), Gaps = 1/248 (0%) Query: 64 DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADS-DVN 122 DP+FM SLARGL VI+AF+ RR ++I+QISQKTGIPRAAVRRCL+TL +LG+ + D Sbjct: 28 DPNFMASLARGLEVIQAFTPQRRLMSISQISQKTGIPRAAVRRCLYTLNKLGFVYAQDGK 87 Query: 123 NFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASR 182 NF LRP+ILTL ++YL STPL + QP L +IS+ L ESCS+A LD +LY+AR++A R Sbjct: 88 NFELRPRILTLAHAYLGSTPLAKATQPVLKHISQLLNESCSIATLDGDNILYIARASAER 147 Query: 183 VMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILA 242 +M++ LN GSRLPA+ TS+GR +L+HLP D+ Y ++ L T+ T+ S +LR+ L Sbjct: 148 IMTIDLNIGSRLPAFATSMGRVLLSHLPADKRDDYLQRITLMRYTQYTIGSIDKLREELD 207 Query: 243 GVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLR 302 VR+ GYA+ D+ELE+GLRSIAVP+ A+G+V AALNVG QA V V+++ E ILP+LL Sbjct: 208 KVRSQGYAINDQELEIGLRSIAVPIMSANGSVTAALNVGVQAGHVPVSELTERILPILLE 267 Query: 303 GAQELSVL 310 GAQELS+L Sbjct: 268 GAQELSLL 275 >B9Z065.1 B9Z065_9NEIS Transcriptional regulator, IclR family Length = 288 Score = 292 bits (747), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 142/250 (56%), Positives = 194/250 (77%), Gaps = 1/250 (0%) Query: 64 DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADS-DVN 122 DP+FMTSLARGL VI+AFS RR ++I+QISQKTGIPRAAVRRCL+TL +LG+ + D Sbjct: 39 DPNFMTSLARGLTVIQAFSQQRRLMSISQISQKTGIPRAAVRRCLYTLNKLGFVSAEDGR 98 Query: 123 NFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASR 182 NF+LRP+IL+LG++YL+STPL +AQP L +IS TL ES S+A+LD ++LY+AR++ SR Sbjct: 99 NFALRPRILSLGHAYLASTPLAKAAQPVLRHISNTLNESSSIAILDGDDILYIARASTSR 158 Query: 183 VMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILA 242 +M++ L+ GSRLPA TS+GR +LA LP ++ +A+ + KL T T+++ LR L Sbjct: 159 IMTIDLDIGSRLPAAYTSMGRVLLASLPAEEREAHLARAKLIKYTSHTLITVDDLRAELE 218 Query: 243 GVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLR 302 VRA GYA++D+ELE+GLRSIAVP+ + G V+AA+N+G QA RVS++ +E ILPVL Sbjct: 219 KVRAQGYAIVDQELEIGLRSIAVPIAASDGKVVAAMNIGVQAGRVSLSDLETRILPVLRA 278 Query: 303 GAQELSVLLP 312 G+ ELS+LLP Sbjct: 279 GSNELSLLLP 288 >C1DSM2.1 C1DSM2_AZOVD Transcriptional regulator PcaR Length = 279 Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 146/258 (56%), Positives = 196/258 (75%), Gaps = 2/258 (0%) Query: 56 AQEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQL 114 A+ I+AL+ DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL +L Sbjct: 20 AKRIEALSGDPNFMTSLARGLAVIGAFQERKRHLTIAQISHRTEIPRAAVRRCLHTLMKL 79 Query: 115 GYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLY 174 G+A +D +SL PK+LTLG++YLSSTPL VSAQPYL+ IS L E+C+LA L+ EVLY Sbjct: 80 GFATTDGRTYSLTPKVLTLGHAYLSSTPLAVSAQPYLDRISEQLHEACNLATLEGEEVLY 139 Query: 175 VARSAA-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVS 233 +ARSA R++SV L+ GSRLPAYCTS+GR +LA L + L+ Y + L A T +T+ S Sbjct: 140 IARSAIPQRLISVDLSVGSRLPAYCTSMGRVLLAALDDVSLQEYLEHADLLAKTSRTLHS 199 Query: 234 QKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQME 293 ++ L + L VR G+ ++D+ELE GLRS+AVPV+ +SG VLAA+NV A RV++A++E Sbjct: 200 REALWECLQQVRRQGWCIVDQELEQGLRSLAVPVQDSSGRVLAAMNVSTHAGRVTIAELE 259 Query: 294 EEILPVLLRGAQELSVLL 311 + LP++L +++LS L Sbjct: 260 KRYLPIMLAASRDLSAQL 277 >A8GES5.1 A8GES5_SERP5 Transcriptional regulator, IclR family Length = 277 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 139/248 (56%), Positives = 188/248 (75%), Gaps = 1/248 (0%) Query: 64 DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTLKQLGYADS-DVN 122 DP+FM SLARGL VI+AF+ RR ++I+QISQKTGIPRAAVRRCL+TL +LG+ + D Sbjct: 28 DPNFMASLARGLEVIQAFTPQRRLMSISQISQKTGIPRAAVRRCLYTLNKLGFVYAQDGK 87 Query: 123 NFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHEVLYVARSAASR 182 NF LRP+ILTL ++YL +TPL + QP L +IS+ L ESCS+A LD +LY+AR++A R Sbjct: 88 NFELRPRILTLAHAYLGATPLAKATQPVLKHISQLLNESCSIATLDGDNILYIARASAER 147 Query: 183 VMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKTVVSQKRLRDILA 242 +M++ LN GSRLPA+ TS+GR +L+HLP D+ + Y ++ L T+ T+ S +LR+ L Sbjct: 148 IMTIDLNIGSRLPAFATSMGRVLLSHLPIDKREDYLQRITLTRYTQYTLSSIDKLREELD 207 Query: 243 GVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVAQMEEEILPVLLR 302 VRA GYA+ D+ELE+GLRSIAVP+ +G V AALNVG QA V ++++ E ILP+LL Sbjct: 208 KVRAQGYAINDQELEIGLRSIAVPITSVNGGVTAALNVGVQAGHVPLSELTERILPILLE 267 Query: 303 GAQELSVL 310 G+QELS+L Sbjct: 268 GSQELSLL 275 >Q02US3.1 Q02US3_PSEAB Transcriptional regulator PcaR Length = 279 Score = 288 bits (737), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 154/270 (57%), Positives = 201/270 (74%), Gaps = 2/270 (0%) Query: 41 PEPAAEAEAERELTIAQEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGI 99 PE +A L+ A+ I A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T I Sbjct: 5 PEHSATLAPPTVLSPAKRIKAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEI 64 Query: 100 PRAAVRRCLHTLKQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLG 159 PRAAVRRCLHTL QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L Sbjct: 65 PRAAVRRCLHTLMQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLH 124 Query: 160 ESCSLAVLDDHEVLYVARSAA-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYF 218 E+CS+A L+ +VLY+ARSA R++SV LN GSRLPAYCTS+GR +LA L +D L AYF Sbjct: 125 EACSMATLEGDDVLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAYF 184 Query: 219 DKVKLRALTEKTVVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAAL 278 V+++A T +T+ + + L L +R G+ ++D+ELEVGLRS+AVPVR ++G+VLAAL Sbjct: 185 GGVEMQAKTSRTLYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAAL 244 Query: 279 NVGAQAARVSVAQMEEEILPVLLRGAQELS 308 NVG A RVS A++E LP+LL ++ELS Sbjct: 245 NVGTHAGRVSRAELESRFLPLLLEASRELS 274 >Q9I6X7.1 Q9I6X7_PSEAE Transcriptional regulator PcaR Length = 279 Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 151/258 (58%), Positives = 198/258 (76%), Gaps = 2/258 (0%) Query: 53 LTIAQEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTL 111 L+ A+ I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL Sbjct: 17 LSPAKRIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTL 76 Query: 112 KQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHE 171 QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L E+CS+A L+ + Sbjct: 77 MQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDD 136 Query: 172 VLYVARSAA-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKT 230 VLY+ARSA R++SV LN GSRLPAYCTS+GR +LA L +D L AYF V+++A T +T Sbjct: 137 VLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRT 196 Query: 231 VVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVA 290 + + + L L +R G+ ++D+ELEVGLRS+AVPVR ++G+VLAALNVG A RVS A Sbjct: 197 LYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRA 256 Query: 291 QMEEEILPVLLRGAQELS 308 ++E LP+LL ++ELS Sbjct: 257 ELESRFLPLLLEASRELS 274 >B7V272.1 B7V272_PSEA8 Transcriptional regulator PcaR Length = 279 Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 151/258 (58%), Positives = 198/258 (76%), Gaps = 2/258 (0%) Query: 53 LTIAQEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTL 111 L+ A+ I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL Sbjct: 17 LSPAKRIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTL 76 Query: 112 KQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHE 171 QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L E+CS+A L+ + Sbjct: 77 MQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDD 136 Query: 172 VLYVARSAA-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKT 230 VLY+ARSA R++SV LN GSRLPAYCTS+GR +LA L +D L AYF V+++A T +T Sbjct: 137 VLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRT 196 Query: 231 VVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVA 290 + + + L L +R G+ ++D+ELEVGLRS+AVPVR ++G+VLAALNVG A RVS A Sbjct: 197 LYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRA 256 Query: 291 QMEEEILPVLLRGAQELS 308 ++E LP+LL ++ELS Sbjct: 257 ELESRFLPLLLEASRELS 274 >E3A6W1.1 E3A6W1_PSEAE Transcriptional regulator PcaR Length = 279 Score = 288 bits (736), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 151/258 (58%), Positives = 198/258 (76%), Gaps = 2/258 (0%) Query: 53 LTIAQEIDALT-DPSFMTSLARGLAVIRAFSDSRRSLTIAQISQKTGIPRAAVRRCLHTL 111 L+ A+ I+A T DP+FMTSLARGLAVI AF + +R LTIAQIS +T IPRAAVRRCLHTL Sbjct: 17 LSPAKRIEAFTGDPNFMTSLARGLAVIHAFQERKRHLTIAQISHRTEIPRAAVRRCLHTL 76 Query: 112 KQLGYADSDVNNFSLRPKILTLGYSYLSSTPLTVSAQPYLNNISRTLGESCSLAVLDDHE 171 QLGYA +D +SL PK+LTLG++YLSSTPL ++AQP L+ +S L E+CS+A L+ + Sbjct: 77 MQLGYATTDGRTYSLLPKVLTLGHAYLSSTPLAITAQPILDRLSEQLHEACSMATLEGDD 136 Query: 172 VLYVARSAA-SRVMSVALNTGSRLPAYCTSLGRAMLAHLPEDQLKAYFDKVKLRALTEKT 230 VLY+ARSA R++SV LN GSRLPAYCTS+GR +LA L +D L AYF V+++A T +T Sbjct: 137 VLYIARSATPQRLISVDLNVGSRLPAYCTSMGRILLAALDDDALHAYFGGVEMQAKTSRT 196 Query: 231 VVSQKRLRDILAGVRANGYAVIDEELEVGLRSIAVPVRGASGNVLAALNVGAQAARVSVA 290 + + + L L +R G+ ++D+ELEVGLRS+AVPVR ++G+VLAALNVG A RVS A Sbjct: 197 LYTPETLLPCLVEIRRQGWCIVDQELEVGLRSLAVPVRDSAGHVLAALNVGTHAGRVSRA 256 Query: 291 QMEEEILPVLLRGAQELS 308 ++E LP+LL ++ELS Sbjct: 257 ELESRFLPLLLEASRELS 274