BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0188.p (186 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IVH9.1 D8IVH9_HERSS RNA polymerase sigma-E factor protein 385 e-105 F0Q1K5.1 F0Q1K5_ACIAP RNA polymerase, sigma-24 subunit, ECF subf... 132 3e-29 Q5GYG4.1 Q5GYG4_XANOR RNA polymerase sigma-E factor 127 5e-28 Q2P1G8.1 Q2P1G8_XANOM RNA polymerase sigma-E factor 127 6e-28 B2SU66.1 B2SU66_XANOP RNA polymerase sigma-E factor 127 6e-28 Q8PLV7.1 Q8PLV7_XANAC RNA polymerase sigma-E factor 127 8e-28 F0BTK9.1 F0BTK9_9XANT RNA polymerase sigma factor, sigma-70 family 127 8e-28 Q3BUW4.1 Q3BUW4_XANC5 RNA polymerase ECF-type sigma factor 127 8e-28 D4ST83.1 D4ST83_9XANT RNA polymerase ECF-type sigma factor 127 8e-28 F0BII7.1 F0BII7_9XANT RNA polymerase sigma factor, sigma-70 family 126 1e-27 >D8IVH9.1 D8IVH9_HERSS RNA polymerase sigma-E factor protein Length = 186 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 184/186 (98%), Positives = 184/186 (98%) Query: 1 MRGPSANSIEQEDIDLIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDT 60 M GPSANSIEQEDIDLIERIA GDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDT Sbjct: 1 MHGPSANSIEQEDIDLIERIAQGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDT 60 Query: 61 MFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLS 120 MFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLS Sbjct: 61 MFVVWTKAQTYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLS 120 Query: 121 ETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKV 180 ETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKV Sbjct: 121 ETQLRRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKV 180 Query: 181 FLSAYA 186 FLSAYA Sbjct: 181 FLSAYA 186 >F0Q1K5.1 F0Q1K5_ACIAP RNA polymerase, sigma-24 subunit, ECF subfamily Length = 197 Score = 132 bits (331), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 80/182 (43%), Positives = 97/182 (53%), Gaps = 8/182 (4%) Query: 10 EQEDIDLIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQ 69 D+ L+ IA GDR A LYR Y RL QFL RL L EEIIND +VVW KA Sbjct: 8 NSHDLALLHAIAAGDRDALATLYRGYHRRLGQFLTRLTRRTDLIEEIINDCFWVVWQKAG 67 Query: 70 TYNGQSKVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPE-----HQLSETQL 124 T+ G S+VSTWI I+Y+ GLK L R P +D V DE + + +L Sbjct: 68 TFRGDSRVSTWIMGISYRCGLKVL-RQSGP--LDASDDVGDETAAERGHPGINPGDDREL 124 Query: 125 RRHIGGALERLSFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSA 184 R + L RLS + R V+ L Y HG S EEIA + TVK RMF+AR KL+ L Sbjct: 125 RDWLAKGLARLSADQRLVLELAYTHGHSIEEIAVITQAPVGTVKARMFHARVKLRNLLPG 184 Query: 185 YA 186 A Sbjct: 185 LA 186 >Q5GYG4.1 Q5GYG4_XANOR RNA polymerase sigma-E factor Length = 197 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y++Y RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D E +T V ++ + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDG--EAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S E R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 137 SPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 187 >Q2P1G8.1 Q2P1G8_XANOM RNA polymerase sigma-E factor Length = 193 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y++Y RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D E +T V ++ + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDG--EAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S E R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >B2SU66.1 B2SU66_XANOP RNA polymerase sigma-E factor Length = 193 Score = 127 bits (320), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 96/171 (56%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y++Y RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAAGDRDALASMYQNYHSRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D E +T V ++ + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDG--EAIDDTAVVEDHAPSADDNDDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S E R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPEQRLVIELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >Q8PLV7.1 Q8PLV7_XANAC RNA polymerase sigma-E factor Length = 193 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >F0BTK9.1 F0BTK9_9XANT RNA polymerase sigma factor, sigma-70 family Length = 193 Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 15 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 74 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 75 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 132 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 133 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 183 >Q3BUW4.1 Q3BUW4_XANC5 RNA polymerase ECF-type sigma factor Length = 197 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 137 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 187 >D4ST83.1 D4ST83_9XANT RNA polymerase ECF-type sigma factor Length = 197 Score = 127 bits (318), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAGGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D +V D + + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTALVEDHAPSADDN-DDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+AD M C + T+K R+F+AR KL+ L A Sbjct: 137 SPDQRLVVELVYGVGHKLEEVADIMQCPVGTIKARLFHARVKLRNVLPGLA 187 >F0BII7.1 F0BII7_9XANT RNA polymerase sigma factor, sigma-70 family Length = 197 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 69/171 (40%), Positives = 95/171 (55%), Gaps = 2/171 (1%) Query: 16 LIERIAHGDRGAFERLYRSYFPRLAQFLRRLVWDGPLSEEIINDTMFVVWTKAQTYNGQS 75 L+ R+A GDR A +Y SY RL +FL RL + EE IND ++ W KA + G S Sbjct: 19 LLRRMAAGDRDALASMYHSYHGRLCRFLSRLTRRPDIIEEAINDCFWIAWQKAGDFRGDS 78 Query: 76 KVSTWIFAIAYKQGLKALSRVDTPVEMDMETMVSDELVEPEHQLSETQLRRHIGGALERL 135 +VSTWI IAY+ GLK L + D +D MV D + + +LR + +ERL Sbjct: 79 QVSTWIMGIAYRCGLKCLRQHDGEA-IDDTAMVEDHAPSADDN-DDRELRDWLDKGMERL 136 Query: 136 SFEHRTVMTLTYFHGMSYEEIADTMGCSINTVKTRMFYARQKLKVFLSAYA 186 S + R V+ L Y G EE+A+ M C + T+K R+F+AR KL+ L A Sbjct: 137 SPDQRLVIELVYGVGHKLEEVAEIMQCPVGTIKARLFHARVKLRNVLPGLA 187