BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0171.p (216 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IVJ5.1 D8IVJ5_HERSS Transcription response regulator protein 422 e-116 A4JV01.1 A4JV01_BURVG Two component transcriptional regulator, w... 274 5e-72 Q1LDD6.1 Q1LDD6_RALME Two component transcriptional regulator, w... 274 6e-72 F0FY28.1 F0FY28_9BURK Winged helix family two component transcri... 274 6e-72 C5T7P8.1 C5T7P8_ACIDE Two component transcriptional regulator, w... 274 6e-72 F1VWR3.1 F1VWR3_9BURK Response regulator receiver:Transcriptiona... 271 6e-71 E7RZA4.1 E7RZA4_9BURK Two component response regulator 270 8e-71 Q47DP7.1 Q47DP7_DECAR Two component transcriptional regulator, w... 270 1e-70 F0GD39.1 F0GD39_9BURK Two component transcriptional regulator 266 2e-69 B5WPI7.1 B5WPI7_9BURK Two component transcriptional regulator, w... 263 1e-68 >D8IVJ5.1 D8IVJ5_HERSS Transcription response regulator protein Length = 220 Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust. Identities = 216/216 (100%), Positives = 216/216 (100%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR Sbjct: 5 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 64 Query: 61 QLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASD 120 QLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASD Sbjct: 65 QLRTHSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAASD 124 Query: 121 QLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEE 180 QLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEE Sbjct: 125 QLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGEE 184 Query: 181 VESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 VESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS Sbjct: 185 VESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 220 >A4JV01.1 A4JV01_BURVG Two component transcriptional regulator, winged helix family Length = 221 Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDY+ KPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKGGTAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG +TLD A K AC +GP V LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + + Sbjct: 185 EVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >Q1LDD6.1 Q1LDD6_RALME Two component transcriptional regulator, winged helix family (Tn6048) Length = 221 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDY+ KPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKGGTAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG +TLD A K AC +GP V LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + + Sbjct: 185 EVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >F0FY28.1 F0FY28_9BURK Winged helix family two component transcriptional regulator Length = 221 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDY+ KPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKGGTAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG +TLD A K AC +GP V LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + + Sbjct: 185 EVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >C5T7P8.1 C5T7P8_ACIDE Two component transcriptional regulator, winged helix family Length = 221 Score = 274 bits (700), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 138/217 (63%), Positives = 169/217 (77%), Gaps = 1/217 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLA 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDY+ KPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPVPLLIITARDGLDDRLRGLDGGADDYVSKPFQMAELLARMRAVLRRKGGTAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG +TLD A K AC +GP V LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PVLSNGVVTLDPATKEACANDGPQVQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQRAS 216 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + + Sbjct: 185 EVESNAVEYLIHALRRKLGGEVIKNVRGVGWMVSKGA 221 >F1VWR3.1 F1VWR3_9BURK Response regulator receiver:Transcriptional regulatory protein Length = 221 Score = 271 bits (692), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 139/215 (64%), Positives = 168/215 (78%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIGE ++ ALKD YAADWV+ G AL LA Q+YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDIMIGEAIQGALKDASYAADWVKNGQTALTTLACQRYDLVLLDLGLPGKDGLEVLT 64 Query: 61 QLR-THSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDYLLKPF I ELLAR+RAVLRR+ G+A+ Sbjct: 65 SIRAIGNPVPLLIITARDGLDDRVRGLDGGADDYLLKPFEIAELLARMRAVLRRKGGSAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 L NG ++LD A + A +G +V LS REF LL AL+ RPGAILSR ELE++LYGWGE Sbjct: 125 PVLGNGIVSLDPATRGATVNDGESVQLSNREFGLLHALLTRPGAILSRRELEDRLYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVEFLIH+LRRKL + IKNVRG+GW+V + Sbjct: 185 EVESNAVEFLIHALRRKLGSDVIKNVRGVGWMVSK 219 >E7RZA4.1 E7RZA4_9BURK Two component response regulator Length = 221 Score = 270 bits (691), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 137/215 (63%), Positives = 167/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG V AL D +AADWV+ G++AL AL Q YD +LLDLGLPG DGL VLR Sbjct: 5 LVEDDPMIGNAVHGALNDASWAADWVKDGNSALTALRTQHYDLVLLDLGLPGRDGLEVLR 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R+ + LPVL++TARD + DRI GLDAGADDY+LKPF I ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRSQPTTLPVLIVTARDALDDRIAGLDAGADDYILKPFEISELLARMRAVLRRQGGQAN 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LS+ +TLD A A + P V LS REFALL ALM RPGAILSRA+LE+++YGWG+ Sbjct: 125 PILSSALLTLDPATHEASRQGQPTVRLSNREFALLHALMQRPGAILSRADLEDRIYGWGQ 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNA+E+LIHSLR+KL EAI+N+RG GW+V + Sbjct: 185 EVESNAIEYLIHSLRKKLGSEAIRNIRGAGWMVSK 219 >Q47DP7.1 Q47DP7_DECAR Two component transcriptional regulator, winged helix family Length = 221 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 137/215 (63%), Positives = 166/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIGE ++ ALKD YAADWV+ G AL L Q YD +LLDLGLPG DGL VL Sbjct: 5 LVEDDFMIGEAIQGALKDASYAADWVKNGQTALTTLGCQHYDLVLLDLGLPGKDGLEVLT 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R + +P+L+ITARDG+ DR+ GLD GADDYLLKPF + ELLAR+RAVLRR+ G A+ Sbjct: 65 SIRAKDNPVPLLIITARDGLNDRLRGLDGGADDYLLKPFEMAELLARMRAVLRRKGGNAT 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG ++LD A + A +V LS REFALL AL+ RPGAILSR++LE+++YGWGE Sbjct: 125 SVLSNGVVSLDPATREAAVNNSASVQLSNREFALLQALLVRPGAILSRSDLEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVEFLIH+LRRKL E IKNVRG+GW+V + Sbjct: 185 EVESNAVEFLIHALRRKLGGEVIKNVRGVGWMVSK 219 >F0GD39.1 F0GD39_9BURK Two component transcriptional regulator Length = 221 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 L+EDDAMIGE V+ ALKD YA DW + G +A AL QQYD ++LDLGLPG DGL VL Sbjct: 5 LIEDDAMIGEAVQDALKDASYAVDWAKTGTSASTALENQQYDLVVLDLGLPGKDGLDVLT 64 Query: 61 QLR-THSLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 +R T + +PV+V+TARD + DR+ GLD GADDY+LKPF + ELLARLRAVLRR++G A+ Sbjct: 65 SIRATGNTVPVVVVTARDALDDRLRGLDGGADDYVLKPFEMVELLARLRAVLRRKNGGAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 L NG ++LD A + A GP + L+ REFALL AL+ RPGAILSR +LE+++YGWGE Sbjct: 125 PTLGNGVVSLDPATREASVHGGPLLQLTNREFALLRALLTRPGAILSRNDLEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVE+LIHSLRRKL E I+NVRG+GW+V + Sbjct: 185 EVESNAVEYLIHSLRRKLGGEIIRNVRGVGWMVSK 219 >B5WPI7.1 B5WPI7_9BURK Two component transcriptional regulator, winged helix family Length = 221 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 134/215 (62%), Positives = 167/215 (77%), Gaps = 1/215 (0%) Query: 1 LVEDDAMIGEEVRCALKDNGYAADWVRAGDAALLALAQQQYDALLLDLGLPGADGLAVLR 60 LVEDD MIG+ ++ ALKD YAADWV+ G AL L Q YD +LLDL LPG DGL VL Sbjct: 5 LVEDDPMIGDAIQGALKDASYAADWVKDGQTALTTLGCQHYDLVLLDLSLPGKDGLEVLV 64 Query: 61 QLRTH-SLLPVLVITARDGIQDRIGGLDAGADDYLLKPFAIGELLARLRAVLRRRSGAAS 119 ++R + +P+L+ITARDG+ DR+ GLD GADDY+LKPF + ELLAR+RAVLRR+ G+A+ Sbjct: 65 RIRAKDNPIPLLIITARDGLDDRLRGLDGGADDYVLKPFQMAELLARIRAVLRRKGGSAA 124 Query: 120 DQLSNGQITLDLAAKTACWREGPAVLLSAREFALLCALMGRPGAILSRAELEEKLYGWGE 179 LSNG ++LD A K A G + LS REF+LL AL+ RPGAILSR+ELE+++YGWGE Sbjct: 125 PALSNGVLSLDPATKEASVSGGSPLQLSNREFSLLQALLVRPGAILSRSELEDRIYGWGE 184 Query: 180 EVESNAVEFLIHSLRRKLDKEAIKNVRGMGWLVQR 214 EVESNAVE+LIH+LRRKL E IKNVRG+GW+V + Sbjct: 185 EVESNAVEYLIHALRRKLGSEVIKNVRGVGWMVSK 219