BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0030.0161.p         (73 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWC0.1 D8IWC0_HERSS Lipoprotein                                     140   9e-32

>D8IWC0.1 D8IWC0_HERSS Lipoprotein
          Length = 265

 Score =  140 bits (352), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 67/69 (97%), Positives = 67/69 (97%)

Query: 5   ETCQYILEAVRGQTVLRYTCSDDCSYIGQLSLPGDVEKDTVIVSNDRHSLPALIVSDAMN 64
           E  QYILEAVRGQTVLRYTCSDDCSYIGQLSLPGDVEKDTVIVSNDRHSLPALIVSDAMN
Sbjct: 197 EHGQYILEAVRGQTVLRYTCSDDCSYIGQLSLPGDVEKDTVIVSNDRHSLPALIVSDAMN 256

Query: 65  GLLAPSMTR 73
           GLLAPSMTR
Sbjct: 257 GLLAPSMTR 265