BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0030.0088.p (526 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWI6.1 D8IWI6_HERSS Sigma-54 dependent transcription regulator... 1038 0.0 Q1IEP8.1 Q1IEP8_PSEE4 Putative sigma-54 dependent transcriptiona... 710 0.0 Q3K764.1 Q3K764_PSEPF Nitric oxide reductase sigma-54-dependent ... 706 0.0 B0KPD7.1 B0KPD7_PSEPG Transcriptional regulator, NifA subfamily,... 702 0.0 C3K1V0.1 C3K1V0_PSEFS Nitric oxide reductase sigma-54-dependent ... 701 0.0 Q4K6L3.1 Q4K6L3_PSEF5 Sigma-54 dependent transcriptional regulator 700 0.0 E2XXW0.1 E2XXW0_PSEFL Anaerobic nitric oxide reductase transcrip... 697 0.0 B1JEM1.1 B1JEM1_PSEPW Transcriptional regulator, NifA subfamily,... 693 0.0 Q88PP1.1 Q88PP1_PSEPK Sigma-54 dependent transcriptional regulator 686 0.0 A5VYN4.1 A5VYN4_PSEP1 Transcriptional regulator, NifA subfamily,... 683 0.0 >D8IWI6.1 D8IWI6_HERSS Sigma-54 dependent transcription regulator (Nitric oxide sensor) protein Length = 526 Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust. Identities = 524/526 (99%), Positives = 526/526 (100%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG Sbjct: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC Sbjct: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA Sbjct: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 Query: 181 QQRAEAYRLGLEQSQGQRELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHA 240 QQRAEAYRLGLEQSQGQREL+GQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHA Sbjct: 181 QQRAEAYRLGLEQSQGQRELIGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHA 240 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE Sbjct: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHR 360 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHR Sbjct: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHR 360 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIREL 420 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIREL Sbjct: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIREL 420 Query: 421 EHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGSLR 480 EHLIGRSALRSLATHRTRP+ILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGSLR Sbjct: 421 EHLIGRSALRSLATHRTRPTILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGSLR 480 Query: 481 DALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 DALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR Sbjct: 481 DALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 >Q1IEP8.1 Q1IEP8_PSEE4 Putative sigma-54 dependent transcriptional regulator Length = 516 Score = 710 bits (1833), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/526 (69%), Positives = 432/526 (82%), Gaps = 10/526 (1%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MT++ LL AL+PLV+DLS ++ D+ERYRRLLQ +R L PCDAAALLRL+G+ LVPLA+DG Sbjct: 1 MTAKPLLTALLPLVSDLSCDLPDQERYRRLLQAMRGLLPCDAAALLRLDGEWLVPLAVDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS+DTLGRRFR++EHPRF LL PTRFA+DSPLPDPYDGLV N H+ +LEVHDC Sbjct: 61 LSADTLGRRFRVSEHPRFQALLSRPEPTRFASDSPLPDPYDGLV---NATHA-DLEVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGC L V+ R WGL+TLDAL G+F +++D+LQAFA+LAAATV VAERI LA + Sbjct: 117 MGCPLMVDERPWGLLTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDE 176 Query: 181 QQRAEAYRLGLEQSQGQRELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHA 240 QRAE YR Q+Q EL+GQS AH+ L++EI + SD+TVL+ GETG GKELVA A Sbjct: 177 HQRAEVYRQASSQAQ---ELIGQSKAHKHLVEEIRLVGGSDLTVLITGETGVGKELVAQA 233 Query: 241 LHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDE 300 LH AS RA KPMISLNCAALPDTLVESELFGHVRGAF+GA +RRGKFE+A+GGTLFLDE Sbjct: 234 LHRASNRADKPMISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDE 293 Query: 301 VGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHR 360 VGELPLAVQAKLLRVLQSGQLQR+GSDREH+VDVRLIAATNRDLA+EV+ G++RADFYHR Sbjct: 294 VGELPLAVQAKLLRVLQSGQLQRLGSDREHQVDVRLIAATNRDLAEEVRNGNYRADFYHR 353 Query: 361 LSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIREL 420 LSV+P++VPPLRERGRDVLLLAGYFLEQNR+RLGL SLRLS+DAQ ALL Y WPGN+REL Sbjct: 354 LSVYPLQVPPLRERGRDVLLLAGYFLEQNRSRLGLGSLRLSSDAQAALLAYDWPGNVREL 413 Query: 421 EHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGSLR 480 EHLIGRSAL++L H RP ILTL+AA L+L ++A AE +P P G LR Sbjct: 414 EHLIGRSALKALGQHGQRPKILTLEAADLDL--RNVAPAIRAEAEMPPVDAPL-PEGGLR 470 Query: 481 DALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 +A++ Y+RQ+V A L+RHG N AA ARELG+DRANL+RLAKRLGLR Sbjct: 471 EAMDDYQRQIVEACLKRHGDNWAAAARELGLDRANLSRLAKRLGLR 516 >Q3K764.1 Q3K764_PSEPF Nitric oxide reductase sigma-54-dependent transcriptional regulator Length = 517 Score = 706 bits (1822), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/530 (66%), Positives = 436/530 (82%), Gaps = 17/530 (3%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 M++++LL AL+PLV+DLSRE+ + ERYRRLL+ +R L PCDAAALLRL+G+ LVPLA+DG Sbjct: 1 MSAKSLLTALLPLVSDLSRELPEGERYRRLLEAMRALLPCDAAALLRLDGEWLVPLAVDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS+DTLGRRF+++EHPRF +LL PTRFAADS LPDPYDGLVDGL+D LEVHDC Sbjct: 61 LSTDTLGRRFKVSEHPRFEVLLAGEGPTRFAADSDLPDPYDGLVDGLDDH----LEVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 +GC L V+ + WGL+TLDAL RF+ +++D+LQAFA+LA+ATVN AERI LA + Sbjct: 117 LGCPLFVDEKLWGLITLDALDPERFEPIELDALQAFASLASATVNAAERIERLATRAEDE 176 Query: 181 QQRAEAYRLGLEQSQGQ--RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVA 238 QRAE YR Q+ GQ RE++GQS AH++L++EI + SD+TVL+ GETG GKELVA Sbjct: 177 HQRAEVYR----QASGQQNREMIGQSKAHKRLVEEINLVGGSDLTVLITGETGVGKELVA 232 Query: 239 HALHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFL 298 A+HAAS RA KP+ISLNCAALPDTLVESELFGHVRGAF+GA +DRRGKFE+A+GGTLFL Sbjct: 233 QAIHAASKRADKPIISLNCAALPDTLVESELFGHVRGAFTGATSDRRGKFELANGGTLFL 292 Query: 299 DEVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFY 358 DEVGEL L VQAKLLRVLQSGQLQR+GSD+EH+VDVRLIAATNRDLA+EV+ G +RADFY Sbjct: 293 DEVGELSLTVQAKLLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDLAEEVRSGRYRADFY 352 Query: 359 HRLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIR 418 HRLSV+P+RVP LR+RGRDVLLL+GYFLEQNR+R+GL+SLRL++DAQ ALL Y WPGN+R Sbjct: 353 HRLSVYPLRVPALRDRGRDVLLLSGYFLEQNRSRMGLNSLRLNSDAQEALLTYTWPGNVR 412 Query: 419 ELEHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAAEPSLPAESTPA--QAS 476 ELEHLIGRSAL++L + RP IL+L A L+LP V P +P+E+T A S Sbjct: 413 ELEHLIGRSALKALGNCKVRPKILSLSAMDLDLP----REVVDNSP-MPSEATAALPLIS 467 Query: 477 GSLRDALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 G LR A E+Y+RQL+SAAL+R+ N A+ ARELG+DRANL R+AKRLG++ Sbjct: 468 GDLRTATEQYQRQLISAALERNQDNWASAARELGLDRANLGRMAKRLGMK 517 >B0KPD7.1 B0KPD7_PSEPG Transcriptional regulator, NifA subfamily, Fis Family Length = 518 Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/530 (68%), Positives = 433/530 (81%), Gaps = 16/530 (3%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MT++ LL AL+PLV+DLSR++ D+ERYRRLLQ +R+L PCDAAALLRL+G+ LVPLA+DG Sbjct: 1 MTTKPLLTALLPLVSDLSRDLPDQERYRRLLQAMRSLLPCDAAALLRLDGEWLVPLAVDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS DTLGRRFR++EHPRF ILL PTRFA+DS LPDPYDGLV+ + +LEVHDC Sbjct: 61 LSPDTLGRRFRVSEHPRFQILLSRPEPTRFASDSELPDPYDGLVNATD----ADLEVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGC L V+ R WGL+TLDAL G+F +++D+LQAFA+LAAATV VAERI LA + Sbjct: 117 MGCPLMVDERPWGLVTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDE 176 Query: 181 QQRAEAYRLGLEQSQGQ-RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAH 239 RAE YR Q+ GQ +EL+GQSPAH++L++EI + SD+TVL+ GETG GKELVA Sbjct: 177 HHRAEIYR----QASGQDKELIGQSPAHKRLVEEIRLVGGSDLTVLITGETGVGKELVAQ 232 Query: 240 ALHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLD 299 ALH AS RA KP+ISLNCAALPDTLVESELFGHVRGAF+GA +RRGKFE+A+GGTLFLD Sbjct: 233 ALHQASSRADKPLISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLD 292 Query: 300 EVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYH 359 EVGELPL VQAKLLRVLQSGQLQR+GSDREHRVDVRLIAATNRDLA EV+ G+FRADFYH Sbjct: 293 EVGELPLTVQAKLLRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVRNGNFRADFYH 352 Query: 360 RLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRE 419 RLSV+P+ VPPLRERGRDVLLLAGYFLEQNR+RLGL+SLRLS +AQ AL+ Y WPGN+RE Sbjct: 353 RLSVYPLHVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSNEAQAALIAYDWPGNVRE 412 Query: 420 LEHLIGRSALRSLATHRTRPSILTLDAAALEL---PAPSLATVAAAEPSLPAESTPAQAS 476 LEHLIGRSAL++L H RP ILTL+A L+L PA + + A PS PA + P Sbjct: 413 LEHLIGRSALKALGQHPDRPRILTLEAIDLDLRVSPAMPGSPPSHAAPS-PAATLP---E 468 Query: 477 GSLRDALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 G LR+A++ Y+RQ++ A LQ+H N AA ARELG+DRANL+RLA+RLGLR Sbjct: 469 GGLREAVDIYQRQVIEACLQKHQDNWAAAARELGLDRANLSRLARRLGLR 518 >C3K1V0.1 C3K1V0_PSEFS Nitric oxide reductase sigma-54-dependent transcriptional regulator Length = 514 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/528 (67%), Positives = 429/528 (81%), Gaps = 16/528 (3%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MT+++LL L+PLVADLSRE+ + ERYRRLLQ +R L PCDAAALLRL+GD LVPLA+DG Sbjct: 1 MTAKSLLTTLLPLVADLSRELPEGERYRRLLQAMRALLPCDAAALLRLDGDSLVPLAVDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS+DTLGRRF+++EHPRF +LL + PTRF +DS LPDPYDGLVDGL+ G LEVHDC Sbjct: 61 LSADTLGRRFKVSEHPRFAVLLSSPGPTRFDSDSELPDPYDGLVDGLH----GHLEVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGC L V+ WGL+TLDAL RF+RV++D+LQAFA+LAAATVNVAERI LA + Sbjct: 117 MGCPLFVDDHPWGLLTLDALDTERFERVELDALQAFASLAAATVNVAERIERLALRAEDE 176 Query: 181 QQRAEAYRLGLEQSQGQ--RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVA 238 QRAE YR Q+ GQ +E++GQS H++L++EI SD+TVL+ GETG GKELVA Sbjct: 177 HQRAEIYR----QASGQQHKEMIGQSKTHKRLVEEIKWVGGSDLTVLITGETGVGKELVA 232 Query: 239 HALHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFL 298 A+HAAS RA KP+ISLNCAALP+TLVESELFGHVRGAF+GA+ +RRGKFE+A+GGTLFL Sbjct: 233 QAIHAASHRADKPLISLNCAALPETLVESELFGHVRGAFTGALNERRGKFELANGGTLFL 292 Query: 299 DEVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFY 358 DEVGEL L VQAKLLRVLQSGQLQR+GSD+EH+VDVRLIAATNRDLADEV+ G +RADFY Sbjct: 293 DEVGELSLTVQAKLLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDLADEVRNGRYRADFY 352 Query: 359 HRLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIR 418 HRLSV+P++VP LRERGRDVLLLAG+FLEQNR+R+GL SLRL++DAQ ALL Y WPGN+R Sbjct: 353 HRLSVYPLQVPALRERGRDVLLLAGFFLEQNRSRMGLGSLRLTSDAQAALLAYNWPGNVR 412 Query: 419 ELEHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGS 478 ELEHLIGRSAL++L R RP IL+L A L+LP S V A P ++ A +G Sbjct: 413 ELEHLIGRSALKALGNCRERPKILSLSAQDLDLPDVSAPVVEA-----PVDTGLA-VTGD 466 Query: 479 LRDALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 LR A E Y+RQ++SA L+RH N A+ ARELG+DRANL R+AKRLG++ Sbjct: 467 LRQATEHYQRQVISACLERHQHNWASAARELGLDRANLGRMAKRLGMK 514 >Q4K6L3.1 Q4K6L3_PSEF5 Sigma-54 dependent transcriptional regulator Length = 518 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 361/527 (68%), Positives = 435/527 (82%), Gaps = 10/527 (1%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MT+++LL AL+PLV DLSRE+ + ERYRRLL+ LR L PCDA ALLRL+G+ LVPLA++G Sbjct: 1 MTAKSLLTALLPLVTDLSRELPEGERYRRLLEALRALLPCDATALLRLDGEWLVPLAVNG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS+DTLGRRF+++EHPRF LL + PTRFA+DS LPDPYDGLV+GL+D LEVHDC Sbjct: 61 LSTDTLGRRFKVSEHPRFAALLSSPGPTRFASDSDLPDPYDGLVEGLDDH----LEVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGC L V+ R WGL+TLDAL RF+ +++D+LQAFA+LAAATV+ A+RI LAQ + Sbjct: 117 MGCPLFVDERPWGLLTLDALDPQRFEPIELDALQAFASLAAATVSAAQRIERLAQRAENE 176 Query: 181 QQRAEAYRLGLEQSQGQ-RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAH 239 QRAE YR Q+ GQ RE++GQS AH++L++EI + SD+TVL+ GETG GKELVA Sbjct: 177 HQRAEVYR----QASGQNREMIGQSKAHKRLLEEIKLVGGSDLTVLITGETGVGKELVAQ 232 Query: 240 ALHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLD 299 A+HAASPRA +P+ISLNCAALPDTLVESELFGHVRGAF+GA DRRGKFE+A+GGTLFLD Sbjct: 233 AIHAASPRAEQPIISLNCAALPDTLVESELFGHVRGAFTGATQDRRGKFELANGGTLFLD 292 Query: 300 EVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYH 359 EVGEL L VQAKLLRVLQSGQLQR+GSD+EHRVDVRLIAATNRDLA+EV+ G +RADFYH Sbjct: 293 EVGELSLTVQAKLLRVLQSGQLQRLGSDQEHRVDVRLIAATNRDLAEEVRNGRYRADFYH 352 Query: 360 RLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRE 419 RLSV+P+RVP LRERGRDVLLL+GYFLEQNR+R+GL SLRLS +AQ+ALL Y WPGN+RE Sbjct: 353 RLSVYPLRVPALRERGRDVLLLSGYFLEQNRSRMGLGSLRLSVEAQQALLAYHWPGNVRE 412 Query: 420 LEHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAAEPSLPAESTPAQASGSL 479 LEHLIGRSAL++L H RP IL+LDA L+LP S T A EP+ ++ PA A G L Sbjct: 413 LEHLIGRSALKALGNHPERPKILSLDAGDLDLPRASERTSAPVEPASATQAMPAVA-GDL 471 Query: 480 RDALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 R A + Y+RQL+S+ L+RH N A+ ARELG+DRANL+RLAKRLGLR Sbjct: 472 RQATDHYQRQLISSCLERHQHNWASAARELGLDRANLSRLAKRLGLR 518 >E2XXW0.1 E2XXW0_PSEFL Anaerobic nitric oxide reductase transcription regulator Length = 513 Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust. Identities = 351/529 (66%), Positives = 431/529 (81%), Gaps = 19/529 (3%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MT+++LL L+PLVADLSR++ + ERYRRLLQ +R L PCDAAALLRL+G+ LVPLA+DG Sbjct: 1 MTAQSLLTTLLPLVADLSRDLPEGERYRRLLQAMRALLPCDAAALLRLDGEWLVPLAVDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS+DTLGRRF+++EHPRF +LL + PTRF +DSPLPDPYDGLVDGL+ G L+VHDC Sbjct: 61 LSADTLGRRFKVSEHPRFAVLLSSPGPTRFDSDSPLPDPYDGLVDGLH----GHLQVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGC L V+ + WGL+TLDAL RF+RV++++LQAFA+LAAATVNVAERI LA + Sbjct: 117 MGCPLFVDDQPWGLLTLDALDTERFERVELEALQAFASLAAATVNVAERIERLALRAEDE 176 Query: 181 QQRAEAYRLGLEQSQGQ--RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVA 238 QRAE YR Q+ GQ +E++GQS H++L++EI + SD+TVL+ GETG GKELVA Sbjct: 177 HQRAEIYR----QASGQQHKEMIGQSKTHKRLVEEIKLVGGSDLTVLITGETGVGKELVA 232 Query: 239 HALHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFL 298 A+HAAS RA KP+ISLNCAALP+TLVESELFGHVRGAF+GA+ +RRGKFE+A+GGTLFL Sbjct: 233 QAIHAASSRADKPLISLNCAALPETLVESELFGHVRGAFTGALNERRGKFELANGGTLFL 292 Query: 299 DEVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFY 358 DEVGEL L VQAKLLRVLQSGQLQR+GSD+EH+VDVRLIAATNRDLA EV+ G +RADFY Sbjct: 293 DEVGELSLTVQAKLLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDLAFEVRNGRYRADFY 352 Query: 359 HRLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIR 418 HRLSV+P++VP LRERGRDVLLLAG+FLEQNR+R+GL SLRL++DAQ ALL Y WPGN+R Sbjct: 353 HRLSVYPLQVPALRERGRDVLLLAGFFLEQNRSRMGLGSLRLTSDAQAALLAYNWPGNVR 412 Query: 419 ELEHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAAEPSLPAESTPAQA-SG 477 ELEHLIGRSAL++L R RP IL+L A L+LP S + E TP A +G Sbjct: 413 ELEHLIGRSALKALGNCRERPKILSLSAQDLDLPDVSAPVI--------EEPTPVAAITG 464 Query: 478 SLRDALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 LR A E Y+RQ++SA+L+RH N A+ ARELG+DRANL R+A+RLG++ Sbjct: 465 DLRQATEHYQRQVISASLERHQHNWASAARELGLDRANLGRMARRLGMK 513 >B1JEM1.1 B1JEM1_PSEPW Transcriptional regulator, NifA subfamily, Fis Family Length = 516 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/529 (68%), Positives = 430/529 (81%), Gaps = 16/529 (3%) Query: 1 MTSRTLLDALVPLVADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDG 60 MT++ LL AL+PLV+DLSR++ + ERYRRLLQ +R L PCDAAALLRL+G+ LVPLA+DG Sbjct: 1 MTAKPLLTALLPLVSDLSRDLPEEERYRRLLQAMRGLLPCDAAALLRLDGEWLVPLAVDG 60 Query: 61 LSSDTLGRRFRITEHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDC 120 LS+DTLGRRF+++EHPRF +LL A PTRF +DS LPDPYDGLV+ H +L VHDC Sbjct: 61 LSADTLGRRFKVSEHPRFQVLLSRAEPTRFPSDSQLPDPYDGLVNA----HDVDLHVHDC 116 Query: 121 MGCALTVNGRAWGLMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQA 180 MGC L V+ R WGL+TLDAL G+F +++D+LQAFA+LAAATV VAERI LA + Sbjct: 117 MGCPLMVDERPWGLVTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDE 176 Query: 181 QQRAEAYRLGLEQSQGQ-RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAH 239 QRAE YR Q+ GQ +EL+GQSPAH++L+ EI + SD+TVL+ GETG GKELVA Sbjct: 177 HQRAEIYR----QASGQDKELIGQSPAHKRLLDEIRLVGGSDLTVLITGETGVGKELVAQ 232 Query: 240 ALHAASPRAHKPMISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLD 299 ALH AS RA+KP+ISLNCAALPDTLVESELFGHVRGAF+GA +RRGKFE+A+GGTLFLD Sbjct: 233 ALHQASHRANKPLISLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLD 292 Query: 300 EVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYH 359 EVGELPLAVQAKLLRVLQSGQLQR+GSDREH VDVRLIAATNRDLA EV+ G++RADFYH Sbjct: 293 EVGELPLAVQAKLLRVLQSGQLQRLGSDREHTVDVRLIAATNRDLAAEVRNGNYRADFYH 352 Query: 360 RLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRE 419 RLSV+P++VPPLRERGRDVLLLAGYFLEQNR+RLGL+SLRLS +AQ ALL Y WPGN+RE Sbjct: 353 RLSVYPLQVPPLRERGRDVLLLAGYFLEQNRSRLGLNSLRLSNEAQSALLAYDWPGNVRE 412 Query: 420 LEHLIGRSALRSLATHRTRPSILTLDAAALELPAPSLATVAAA--EPSLPAESTPAQASG 477 LEHLIGRSAL++L H RP ILTL A+ L+ L TVA PS P+ A G Sbjct: 413 LEHLIGRSALKALGQHPDRPRILTLQASDLD-----LRTVAGGVQAPSPAPLPAPSLAEG 467 Query: 478 SLRDALERYERQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 LR+A++ Y+RQ++ A LQRH N AA ARELG+DRANLNRLA+RLGLR Sbjct: 468 GLREAVDGYQRQIIDACLQRHQDNWAAAARELGLDRANLNRLARRLGLR 516 >Q88PP1.1 Q88PP1_PSEPK Sigma-54 dependent transcriptional regulator Length = 518 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/519 (68%), Positives = 421/519 (81%), Gaps = 20/519 (3%) Query: 14 VADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDGLSSDTLGRRFRIT 73 V+DLSR++ D+ERYRRLLQ +R L PCDAAALLRL+G+ LVPLA+DGLS DTLGRRFR++ Sbjct: 14 VSDLSRDLPDQERYRRLLQAMRGLLPCDAAALLRLDGEWLVPLAVDGLSPDTLGRRFRVS 73 Query: 74 EHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDCMGCALTVNGRAWG 133 EHPRF ILL PTRFA+DS LPDPYDGLV+ + +LEVHDCMGC L V+ R WG Sbjct: 74 EHPRFQILLSRPEPTRFASDSELPDPYDGLVNAPD----ADLEVHDCMGCPLMVDERPWG 129 Query: 134 LMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQAQQRAEAYRLGLEQ 193 L+TLDAL G+F +++D+LQAFA+LAAATV VAERI LA + RAE YR Q Sbjct: 130 LVTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDEHHRAELYR----Q 185 Query: 194 SQGQ-RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHALHAASPRAHKPM 252 + GQ REL+GQSPAH++L++EI + SD+TVL+ GETG GKELVA ALH AS RA KP+ Sbjct: 186 ASGQDRELIGQSPAHKRLVEEIRLVGSSDLTVLITGETGVGKELVAQALHRASSRADKPL 245 Query: 253 ISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELPLAVQAKL 312 +SLNCAALPDTLVESELFGHVRGAF+GA +RRGKFE+A+GGTLFLDEVGELPL VQAKL Sbjct: 246 VSLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDEVGELPLTVQAKL 305 Query: 313 LRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHRLSVFPIRVPPLR 372 LRVLQSGQLQR+GSDREHRVDVRLIAATNRDLA EV+ G+FRADFYHRLSV+P+ VPPLR Sbjct: 306 LRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVRTGNFRADFYHRLSVYPLHVPPLR 365 Query: 373 ERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRELEHLIGRSALRSL 432 ERGRDVLLLAGYFLEQNR+RLGL+SLRLS +AQ AL+ Y WPGN+RELEHLIGRSAL++L Sbjct: 366 ERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQAALIAYDWPGNVRELEHLIGRSALKAL 425 Query: 433 ATHRTRPSILTLDAAALELPAPSLATVAAAEP-SLPAESTPAQA----SGSLRDALERYE 487 H RP ILTL+A L+L V+A P +LP+ + P Q G LR+A++ Y+ Sbjct: 426 GQHPDRPRILTLEAIDLDL------RVSATTPGTLPSPAAPLQVVTPPEGGLREAVDSYQ 479 Query: 488 RQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 RQ++ A LQRH N AA ARELG+DRANL+RLA+RLGLR Sbjct: 480 RQVIEACLQRHQDNWAAAARELGLDRANLSRLARRLGLR 518 >A5VYN4.1 A5VYN4_PSEP1 Transcriptional regulator, NifA subfamily, Fis Family Length = 518 Score = 683 bits (1762), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/519 (68%), Positives = 420/519 (80%), Gaps = 20/519 (3%) Query: 14 VADLSREIDDRERYRRLLQTLRTLFPCDAAALLRLEGDVLVPLAIDGLSSDTLGRRFRIT 73 V+DLSR++ D+ERYRRLLQ +R L PCDAAALLRL+G+ LVPLA+DGLS DTLGRRFR++ Sbjct: 14 VSDLSRDLPDQERYRRLLQAMRGLLPCDAAALLRLDGEWLVPLAVDGLSPDTLGRRFRVS 73 Query: 74 EHPRFGILLGNAAPTRFAADSPLPDPYDGLVDGLNDQHSGELEVHDCMGCALTVNGRAWG 133 EHPRF ILL PTRFA+DS LPDPYDGLV+ + +LEVHDCMGC L V+ R WG Sbjct: 74 EHPRFQILLSRPEPTRFASDSELPDPYDGLVNAPD----ADLEVHDCMGCPLMVDERPWG 129 Query: 134 LMTLDALGRGRFDRVDMDSLQAFAALAAATVNVAERISDLAQAGQQAQQRAEAYRLGLEQ 193 L+TLDAL G+F +++D+LQAFA+LAAATV VAERI LA + RAE YR Q Sbjct: 130 LVTLDALTPGQFQSLELDALQAFASLAAATVTVAERIEHLALRAEDEHHRAELYR----Q 185 Query: 194 SQGQ-RELMGQSPAHRQLMQEIGMAAPSDMTVLVAGETGTGKELVAHALHAASPRAHKPM 252 + GQ REL+GQS AH++L++EI + SD+TVL+ GETG GKELVA ALH AS RA KP+ Sbjct: 186 ASGQDRELIGQSAAHKRLVEEIRLVGSSDLTVLITGETGVGKELVAQALHQASNRADKPL 245 Query: 253 ISLNCAALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELPLAVQAKL 312 +SLNCAALPDTLVESELFGHVRGAF+GA +RRGKFE+A+GGTLFLDEVGELPL VQAKL Sbjct: 246 VSLNCAALPDTLVESELFGHVRGAFTGAHGERRGKFELANGGTLFLDEVGELPLTVQAKL 305 Query: 313 LRVLQSGQLQRVGSDREHRVDVRLIAATNRDLADEVKRGHFRADFYHRLSVFPIRVPPLR 372 LRVLQSGQLQR+GSDREHRVDVRLIAATNRDLA EV+ G+FRADFYHRLSV+P+ VPPLR Sbjct: 306 LRVLQSGQLQRLGSDREHRVDVRLIAATNRDLAAEVRTGNFRADFYHRLSVYPLHVPPLR 365 Query: 373 ERGRDVLLLAGYFLEQNRARLGLSSLRLSADAQRALLDYAWPGNIRELEHLIGRSALRSL 432 ERGRDVLLLAGYFLEQNR+RLGL+SLRLS +AQ AL+ Y WPGN+RELEHLIGRSAL++L Sbjct: 366 ERGRDVLLLAGYFLEQNRSRLGLNSLRLSHEAQAALIAYDWPGNVRELEHLIGRSALKAL 425 Query: 433 ATHRTRPSILTLDAAALELPAPSLATVAAAEP-SLPAESTPAQA----SGSLRDALERYE 487 H RP ILTL+A L+L V+A P +LP+ + P Q G LR+A++ Y+ Sbjct: 426 GQHPDRPRILTLEAIDLDL------RVSATTPGTLPSPAAPLQVVTPPEGGLREAVDIYQ 479 Query: 488 RQLVSAALQRHGGNLAATARELGVDRANLNRLAKRLGLR 526 RQ++ A LQRH N AA ARELG+DRANL+RLA+RLGLR Sbjct: 480 RQVIEACLQRHQDNWAAAARELGLDRANLSRLARRLGLR 518