BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0332.p (213 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRG4.1 D8IRG4_HERSS Transmembrane NADH dehydrogenase I (Chain ... 418 e-115 A6SY14.1 A6SY14_JANMA NADH dehydrogenase I chain J EC=1.6.5.3 298 3e-79 F1W1C1.1 F1W1C1_9BURK NADH-ubiquinone oxidoreductase chain J 291 6e-77 A4G635.1 A4G635_HERAR NADH-quinone oxidoreductase subunit J (NAD... 273 9e-72 Q3SJP8.1 Q3SJP8_THIDA NADH dehydrogenase I chain J EC=1.6.5.3 255 3e-66 A6GS84.1 A6GS84_9BURK NADH-ubiquinone/plastoquinone oxidoreducta... 250 1e-64 A1VM69.1 A1VM69_POLNA NADH dehydrogenase subunit J EC=1.6.5.3 249 2e-64 Q127Y1.1 Q127Y1_POLSJ NADH dehydrogenase subunit J EC=1.6.5.3 247 8e-64 E6PR34.1 E6PR34_9ZZZZ NADH:ubiquinone oxidoreductase, membrane s... 247 9e-64 Q5P1E1.1 Q5P1E1_AROAE NADH dehydrogenase I, chain J EC=1.6.5.3 242 3e-62 >D8IRG4.1 D8IRG4_HERSS Transmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein EC=1.6.5.3 Length = 219 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 213/213 (100%), Positives = 213/213 (100%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV Sbjct: 7 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD Sbjct: 67 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD Sbjct: 127 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 186 Query: 181 RVRLVSMKAESTRNEPPADAAAAADKPAAGQQS 213 RVRLVSMKAESTRNEPPADAAAAADKPAAGQQS Sbjct: 187 RVRLVSMKAESTRNEPPADAAAAADKPAAGQQS 219 >A6SY14.1 A6SY14_JANMA NADH dehydrogenase I chain J EC=1.6.5.3 Length = 213 Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 149/206 (72%), Positives = 173/206 (83%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVF+ ILV+AA+RVIT NPVHAALFLVLSF SAA +WMLLKAEFL+IVL+LVYVGAV Sbjct: 7 LFYVFSAILVLAAIRVITESNPVHAALFLVLSFCSAAALWMLLKAEFLSIVLILVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMM+DI + KLREGFWGY PLAATIGV+IVLEMA VL R FW TQVP S Sbjct: 67 MVLFLFVVMMVDIKLTKLREGFWGYLPLAATIGVVIVLEMALVLFRGFWRSHTQVPEVSA 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 +G K LGKLI+T+Y+YAFEIAAV+LLV ++AAVALT+RKRKDSKYF P AV+VKASD Sbjct: 127 NIGNAKELGKLIYTDYLYAFEIAAVLLLVGMIAAVALTMRKRKDSKYFAPGDAVRVKASD 186 Query: 181 RVRLVSMKAESTRNEPPADAAAAADK 206 R+R+V MKA+S R + AA AA++ Sbjct: 187 RLRVVKMKADSARANGDSPAAPAAEQ 212 >F1W1C1.1 F1W1C1_9BURK NADH-ubiquinone oxidoreductase chain J Length = 221 Score = 291 bits (744), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 156/193 (80%), Positives = 179/193 (92%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFY F+ ILV+AA++VIT RNPVH+ALFLVLSFFSAA IW+LL+AEFLAIVLVLVYVGAV Sbjct: 7 LFYAFSAILVMAALKVITDRNPVHSALFLVLSFFSAAAIWLLLQAEFLAIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDIN+DK+REGFWGY P AA IGV+IVLEM+AVLL++FW P+ QVP+A+ Sbjct: 67 MVLFLFVVMMLDINVDKMREGFWGYLPFAAFIGVLIVLEMSAVLLQAFWAPDAQVPSAAS 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 T+G TK LGKLI+TEYV+AFEIAA ILL+AIVAAVALTLRKRKDSKYFDPA+AVKVKASD Sbjct: 127 TIGTTKELGKLIYTEYVFAFEIAAAILLLAIVAAVALTLRKRKDSKYFDPAEAVKVKASD 186 Query: 181 RVRLVSMKAESTR 193 RVR+V MK+ESTR Sbjct: 187 RVRIVKMKSESTR 199 >A4G635.1 A4G635_HERAR NADH-quinone oxidoreductase subunit J (NADH dehydrogenase I subunit J) (NDH-1 subunit J) EC=1.6.99.5 Length = 213 Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 147/206 (71%), Positives = 173/206 (83%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVF+ ILV AA+RVIT NPVHAALFLVLSF +AA +WMLLKAEFL+IVLVLVYVGAV Sbjct: 7 LFYVFSAILVFAAIRVITDSNPVHAALFLVLSFCTAAALWMLLKAEFLSIVLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMM+DI + +REGFWGY PLAATIGV+IVLEMAAVL R FW T VP A+ Sbjct: 67 MVLFLFVVMMVDIKLSNVREGFWGYLPLAATIGVVIVLEMAAVLFRGFWKAHTHVPEAAA 126 Query: 121 TLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASD 180 +G TK LGKLI+T+Y+YAFE+AA++LL+A+VAAVALT+RKRKD+KYF P AVKVK+ D Sbjct: 127 MIGNTKELGKLIYTQYLYAFELAALLLLLAMVAAVALTMRKRKDTKYFAPGDAVKVKSGD 186 Query: 181 RVRLVSMKAESTRNEPPADAAAAADK 206 R+R+V MKAESTR AA AA++ Sbjct: 187 RLRVVKMKAESTRANGDQSAAPAAEQ 212 >Q3SJP8.1 Q3SJP8_THIDA NADH dehydrogenase I chain J EC=1.6.5.3 Length = 211 Score = 255 bits (651), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 131/193 (67%), Positives = 158/193 (81%), Gaps = 2/193 (1%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 +FY FA ILV A +RVITARNPVHAALFLVL+FF+AAG+W+LL+AEFLAI LVLVYVGAV Sbjct: 6 IFYFFAAILVFAGLRVITARNPVHAALFLVLAFFTAAGLWLLLEAEFLAITLVLVYVGAV 65 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVL-LRSFWTPETQVPAAS 119 MVLFLFVVMMLDIN+D+LREGFW Y PLA + +++V+EMA +L R F VP A Sbjct: 66 MVLFLFVVMMLDINLDQLREGFWNYLPLAGVVAILLVIEMALILGGRHFGLDVIGVPPAQ 125 Query: 120 DT-LGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKA 178 TK LG+LI+T+YVYAFE+AAVILLVAIVAA+ALTLR+RKD+KY DPA+ VKVK Sbjct: 126 PADYSNTKELGRLIYTDYVYAFELAAVILLVAIVAAIALTLRRRKDTKYIDPAQQVKVKR 185 Query: 179 SDRVRLVSMKAES 191 +DR+R++ M AE Sbjct: 186 NDRLRIIKMPAEK 198 >A6GS84.1 A6GS84_9BURK NADH-ubiquinone/plastoquinone oxidoreductase, chain 6 Length = 210 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 129/205 (62%), Positives = 160/205 (78%), Gaps = 6/205 (2%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FYVFA ILV AAVRVITA N VHAAL+LVLSFFSA+ +WMLL+AEFLAI LVLVYVGAVM Sbjct: 8 FYVFAAILVFAAVRVITASNAVHAALYLVLSFFSASALWMLLEAEFLAISLVLVYVGAVM 67 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASDT 121 VLFLFVVMM+D+NMDK+R GFW P+AA +G +I +M+ VLLR FW P + P Sbjct: 68 VLFLFVVMMVDVNMDKVRAGFWKNLPVAAIVGSLIAFQMSVVLLRGFWDPNLETP--EQA 125 Query: 122 LGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKASDR 181 T+ LGKL++TEY+Y FE+AA+ILLVA+VAA+ALTLRKRKD+K P+ V+VK++DR Sbjct: 126 ANNTEALGKLLYTEYLYPFEVAALILLVAMVAAIALTLRKRKDTKGQVPSDQVRVKSTDR 185 Query: 182 VRLVSMKAE----STRNEPPADAAA 202 V+LVSM A+ T++E P+ A Sbjct: 186 VKLVSMPADLDRKQTKSETPSGPKA 210 >A1VM69.1 A1VM69_POLNA NADH dehydrogenase subunit J EC=1.6.5.3 Length = 215 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 128/194 (65%), Positives = 156/194 (80%), Gaps = 5/194 (2%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVFA +L+ AA RVITARNPVHAALFLVL+FF AA +W+LLKAEFLAI LVLVYVGAV Sbjct: 7 LFYVFAAVLLFAAFRVITARNPVHAALFLVLAFFQAAAVWILLKAEFLAITLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPET--QVPAA 118 MVLFLFVVMMLDIN+D +R+GFW +FPLA T+G II LEM+ VL+ F P +P + Sbjct: 67 MVLFLFVVMMLDINLDSVRKGFWKHFPLAGTVGAIIALEMSYVLMGGFREPPQGASMPVS 126 Query: 119 SDTLGQ---TKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVK 175 + Q TK LGK+++++Y+Y EIAAVILLVAI+AA+ALTLR+RKDSK +PA V+ Sbjct: 127 GELAAQVSNTKELGKVLYSQYIYPLEIAAVILLVAIIAAIALTLRERKDSKRTNPADQVR 186 Query: 176 VKASDRVRLVSMKA 189 VK+ DRVRLV MK+ Sbjct: 187 VKSQDRVRLVKMKS 200 >Q127Y1.1 Q127Y1_POLSJ NADH dehydrogenase subunit J EC=1.6.5.3 Length = 217 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 126/196 (64%), Positives = 155/196 (79%), Gaps = 11/196 (5%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFYVFA +L+ AA RVITARNPVHAAL+LVL+FF AA +W+LLKAEFLAI LVLVYVGAV Sbjct: 7 LFYVFAAVLLFAAFRVITARNPVHAALYLVLAFFQAAAVWILLKAEFLAITLVLVYVGAV 66 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPETQVPAASD 120 MVLFLFVVMMLDIN+D +R+GFW +FPLA T+G II LEM+ VL+ F P P A+ Sbjct: 67 MVLFLFVVMMLDINIDSVRKGFWKHFPLAGTVGAIIALEMSYVLMGGFREP----PKAAS 122 Query: 121 TLGQ-------TKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKA 173 GQ TK LGKL+++EY+Y E+AAVILLVA++AA+ALTLR+RKD+KY +P+ Sbjct: 123 APGQIGAQVSNTKELGKLLYSEYLYPLEVAAVILLVAMIAAIALTLRQRKDTKYINPSDQ 182 Query: 174 VKVKASDRVRLVSMKA 189 ++VK DRV LV MK+ Sbjct: 183 IRVKRGDRVSLVKMKS 198 >E6PR34.1 E6PR34_9ZZZZ NADH:ubiquinone oxidoreductase, membrane subunit J EC=1.6.5.3 Length = 244 Score = 247 bits (630), Expect = 9e-64, Method: Compositional matrix adjust. Identities = 127/203 (62%), Positives = 157/203 (77%), Gaps = 12/203 (5%) Query: 1 LFYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAV 60 LFY+F+ +L+ AA RVITARNPVH+AL+LVL+FF AA IWMLL+AEFLAIVLVLVYVGAV Sbjct: 40 LFYIFSAVLLFAAFRVITARNPVHSALYLVLAFFQAATIWMLLRAEFLAIVLVLVYVGAV 99 Query: 61 MVLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFW----------- 109 MVLFLFVVMMLDIN+D++R+GFW YFP+AA +GV IVLEMAAVL+++F Sbjct: 100 MVLFLFVVMMLDINIDRMRQGFWRYFPVAALVGVFIVLEMAAVLMQAFQIGGQTAAAQVG 159 Query: 110 -TPETQVPAASDTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYF 168 P T V A L T LG +++T Y+Y EIAAVILLVAI+AA++LTLR+RKD+K Sbjct: 160 GQPSTPVAHALAQLPNTNALGLVLYTHYLYPLEIAAVILLVAIIAAISLTLRRRKDTKTM 219 Query: 169 DPAKAVKVKASDRVRLVSMKAES 191 ++ +KV+ DRVRLV MKAE Sbjct: 220 QVSEQLKVRRQDRVRLVQMKAEG 242 >Q5P1E1.1 Q5P1E1_AROAE NADH dehydrogenase I, chain J EC=1.6.5.3 Length = 200 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 120/192 (62%), Positives = 153/192 (79%), Gaps = 2/192 (1%) Query: 2 FYVFAVILVIAAVRVITARNPVHAALFLVLSFFSAAGIWMLLKAEFLAIVLVLVYVGAVM 61 FYV AVI+V A +RVITARNPVHAALFLVLSFFSA GIW+LL AEFLA+VLV+VYVGAVM Sbjct: 8 FYVLAVIMVFAGLRVITARNPVHAALFLVLSFFSAGGIWLLLAAEFLAVVLVMVYVGAVM 67 Query: 62 VLFLFVVMMLDINMDKLREGFWGYFPLAATIGVIIVLEMAAVLLRSFWTPET--QVPAAS 119 VLFLFVVMMLDIN+D+LR+GFW Y P+ A IGV++V+EMA VL ++ E + PAA Sbjct: 68 VLFLFVVMMLDINLDRLRQGFWSYLPVGALIGVLLVVEMALVLGGRYFGLEAMPEPPAAQ 127 Query: 120 DTLGQTKPLGKLIFTEYVYAFEIAAVILLVAIVAAVALTLRKRKDSKYFDPAKAVKVKAS 179 T+ LG+L++T+YVY FE+A+++LLVA++ AV LTLRKRK +Y +P++ + +K Sbjct: 128 AGYSNTRELGRLLYTDYVYPFELASLLLLVAMIVAVTLTLRKRKGVRYLNPSEQISIKRG 187 Query: 180 DRVRLVSMKAES 191 DRV L+SM AE Sbjct: 188 DRVELISMPAEK 199