BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0283.p (192 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQY6.1 D8IQY6_HERSS RNA polymerase sigma-70 factor, ECF subfam... 394 e-108 F1W4J8.1 F1W4J8_9BURK DNA-directed RNA polymerase specialized si... 315 2e-84 Q473V8.1 Q473V8_CUPPJ Sigma-70 region 2:Sigma-70 region 4 305 2e-81 Q1LPY0.1 Q1LPY0_RALME RNA polymerase sigma R factor (ECF) 304 3e-81 B2JDP2.1 B2JDP2_BURP8 RNA polymerase, sigma-24 subunit, ECF subf... 304 4e-81 A6SZZ4.1 A6SZZ4_JANMA RNA polymerase sigma-70 factor, ECF subfamily 302 2e-80 B2T2D5.1 B2T2D5_BURPP RNA polymerase, sigma-24 subunit, ECF subf... 300 8e-80 B1FYA9.1 B1FYA9_9BURK RNA polymerase, sigma-24 subunit, ECF subf... 300 9e-80 B2U7S6.1 B2U7S6_RALPJ RNA polymerase, sigma-24 subunit, ECF subf... 300 9e-80 E2T101.1 E2T101_9RALS RNA polymerase sigma-E factor 300 9e-80 >D8IQY6.1 D8IQY6_HERSS RNA polymerase sigma-70 factor, ECF subfamily (Sigma-24) transcription regulator protein Length = 192 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/192 (100%), Positives = 192/192 (100%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ Sbjct: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD Sbjct: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA Sbjct: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 Query: 181 LAQALRAKGISL 192 LAQALRAKGISL Sbjct: 181 LAQALRAKGISL 192 >F1W4J8.1 F1W4J8_9BURK DNA-directed RNA polymerase specialized sigma subunit, sigma24-like protein Length = 189 Score = 315 bits (808), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 147/192 (76%), Positives = 174/192 (90%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE+VERRAFKQA+YAVRK+E+ALDIVQDAMIKL++ YGDKP ELP+LFQ Sbjct: 1 MATDKELSDFLENVERRAFKQAIYAVRKEESALDIVQDAMIKLSQSYGDKPPAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRREKVRNTWV+LFSS GN G+ G++F+LL+ ++D ++A+ES AD Sbjct: 61 RILQNTIHDYFRREKVRNTWVTLFSSMTGN---GDAGDEFELLDHYNADDNAQASESGAD 117 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K++R+QTL+ ID E+QKLP RQREAFLMRYWQD+DVAETAAAMGCSEGSVKTHCSRATH Sbjct: 118 KLQREQTLSAIDHEVQKLPARQREAFLMRYWQDLDVAETAAAMGCSEGSVKTHCSRATHT 177 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 178 LAQALKAKGITL 189 >Q473V8.1 Q473V8_CUPPJ Sigma-70 region 2:Sigma-70 region 4 Length = 188 Score = 305 bits (782), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 150/192 (78%), Positives = 167/192 (86%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATD+ELSDFL SVERRAFKQAV+AVR DEAALDIVQDAMIKLAEKYGDK ELP LFQ Sbjct: 1 MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR+KVRNTW+SLFSS D G+D DLL++LE+E G+E AESSAD Sbjct: 61 RILQNTIHDWFRRQKVRNTWISLFSSLR----DERDGDDNDLLDTLEAEAGTEMAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q + +I+ EIQ+LPTRQREAFLMRYW+DMDVAETAA MGCSEGSVKTHCSRATH Sbjct: 117 KVERAQVMAIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHT 176 Query: 181 LAQALRAKGISL 192 LAQALRA+G+ L Sbjct: 177 LAQALRARGVRL 188 >Q1LPY0.1 Q1LPY0_RALME RNA polymerase sigma R factor (ECF) Length = 188 Score = 304 bits (779), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 149/192 (77%), Positives = 168/192 (87%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATD+ELSDFL SVERRAFKQAV+AVR DEAALDIVQDAMIKLAEKYGDK ELP LFQ Sbjct: 1 MATDQELSDFLASVERRAFKQAVFAVRDDEAALDIVQDAMIKLAEKYGDKSAAELPPLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR+KVRNTWV+LFS N D G+D DLL++LE++ G+E AESSAD Sbjct: 61 RILQNTIHDWFRRQKVRNTWVTLFS----NLRDEREGDDSDLLDTLEAQAGTEMAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q +++I+ EIQ+LPTRQREAFLMRYW+DMDVAETAA MGCSEGSVKTHCSRATH Sbjct: 117 KVERAQVMHIIEQEIQRLPTRQREAFLMRYWEDMDVAETAAVMGCSEGSVKTHCSRATHT 176 Query: 181 LAQALRAKGISL 192 LAQALRA+G+ L Sbjct: 177 LAQALRARGVRL 188 >B2JDP2.1 B2JDP2_BURP8 RNA polymerase, sigma-24 subunit, ECF subfamily Length = 187 Score = 304 bits (778), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 148/192 (77%), Positives = 165/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQN +HD+FRR+KVRNTWVSLFSS G N D EDFD LE+ ES+DGS ESS Sbjct: 61 RILQNAMHDYFRRQKVRNTWVSLFSSLG-NADD----EDFDPLETFESQDGSTGVESSEQ 115 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 ++ER+Q L LID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 QLEREQVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187 >A6SZZ4.1 A6SZZ4_JANMA RNA polymerase sigma-70 factor, ECF subfamily Length = 189 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 145/192 (75%), Positives = 165/192 (85%), Gaps = 3/192 (1%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MATDKELSDFLE VERRAFKQAVYAVRK+E+ALDIVQDAMIKLAEKYGDKP ELPMLFQ Sbjct: 1 MATDKELSDFLEDVERRAFKQAVYAVRKEESALDIVQDAMIKLAEKYGDKPAPELPMLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTI D+FRREKVR +W+SLFSSFG D E+FD ++ +E+E+GS AE+ Sbjct: 61 RILQNTIRDYFRREKVRTSWISLFSSFGNKQED---QENFDAMDMIEAEEGSYGAETGLV 117 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q L I+ E+Q LP+RQREAFLMRYWQD++VAETAA MGCSEGSVKTHCSRATHA Sbjct: 118 KLERKQVLEFIEHEVQNLPSRQREAFLMRYWQDLNVAETAAVMGCSEGSVKTHCSRATHA 177 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI L Sbjct: 178 LAQALKAKGIYL 189 >B2T2D5.1 B2T2D5_BURPP RNA polymerase, sigma-24 subunit, ECF subfamily Length = 187 Score = 300 bits (767), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 146/192 (76%), Positives = 164/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQN +HD+FRR KVRNTWVSLFSS G N D EDFD LE+ E++ GS +ES+ Sbjct: 61 RILQNAMHDYFRRAKVRNTWVSLFSSLG-NADD----EDFDPLETFEAQQGSAGSESNEQ 115 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q L LID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 KLEREQVLQLIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187 >B1FYA9.1 B1FYA9_9BURK RNA polymerase, sigma-24 subunit, ECF subfamily Length = 187 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 146/192 (76%), Positives = 164/192 (85%), Gaps = 5/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+DKEL+DFL VERRAFKQ VYAVR D+A+LDIVQDAMIKLAEKYGD+P ELP+LFQ Sbjct: 1 MASDKELADFLAGVERRAFKQTVYAVRDDDASLDIVQDAMIKLAEKYGDRPAAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQN +HD+FRR KVRNTWVSLFSSF GN D E FD LE+ E++ GS AES+ Sbjct: 61 RILQNAMHDYFRRAKVRNTWVSLFSSF-GNADDDE----FDPLETFEAQQGSAGAESNEQ 115 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 K+ER+Q L +ID EIQKLP RQREAFLMRYW+DMDVAETAAAMGCSEGSVKTHCSRATH Sbjct: 116 KLEREQVLQMIDDEIQKLPARQREAFLMRYWEDMDVAETAAAMGCSEGSVKTHCSRATHT 175 Query: 181 LAQALRAKGISL 192 LAQAL+AKGI+L Sbjct: 176 LAQALKAKGITL 187 >B2U7S6.1 B2U7S6_RALPJ RNA polymerase, sigma-24 subunit, ECF subfamily Length = 188 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 149/192 (77%), Positives = 167/192 (86%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+++ELS FL SVE+RAFKQAV+AVR D+AALDIVQDAMIKLAEKYGDKP ELP+LFQ Sbjct: 1 MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR KVRNTWVSLFSSF + G+D D LE +ESE G+ AAESSAD Sbjct: 61 RILQNTIHDWFRRTKVRNTWVSLFSSFRSDAE----GDDTDPLELIESEAGTTAAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q L +++ EI+KLPTRQREAFLMRYW+DMDVAETA AMGCSEGSVKTHCSRATHA Sbjct: 117 KVERSQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHA 176 Query: 181 LAQALRAKGISL 192 LAQALRA+GI L Sbjct: 177 LAQALRARGIRL 188 >E2T101.1 E2T101_9RALS RNA polymerase sigma-E factor Length = 188 Score = 300 bits (767), Expect = 9e-80, Method: Compositional matrix adjust. Identities = 149/192 (77%), Positives = 167/192 (86%), Gaps = 4/192 (2%) Query: 1 MATDKELSDFLESVERRAFKQAVYAVRKDEAALDIVQDAMIKLAEKYGDKPVDELPMLFQ 60 MA+++ELS FL SVE+RAFKQAV+AVR D+AALDIVQDAMIKLAEKYGDKP ELP+LFQ Sbjct: 1 MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQ 60 Query: 61 RILQNTIHDFFRREKVRNTWVSLFSSFGGNGGDGEGGEDFDLLESLESEDGSEAAESSAD 120 RILQNTIHD+FRR KVRNTWVSLFSSF + G+D D LE +ESE G+ AAESSAD Sbjct: 61 RILQNTIHDWFRRTKVRNTWVSLFSSFRSDAE----GDDTDPLELIESEAGTTAAESSAD 116 Query: 121 KVERQQTLNLIDAEIQKLPTRQREAFLMRYWQDMDVAETAAAMGCSEGSVKTHCSRATHA 180 KVER Q L +++ EI+KLPTRQREAFLMRYW+DMDVAETA AMGCSEGSVKTHCSRATHA Sbjct: 117 KVERSQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHA 176 Query: 181 LAQALRAKGISL 192 LAQALRA+GI L Sbjct: 177 LAQALRARGIRL 188