BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0276.p (377 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRU2.1 D8IRU2_HERSS Sigma54-dependent transcription regulator ... 461 e-128 E1THZ8.1 E1THZ8_BURSG Sigma54 specific transcriptional regulator... 249 5e-64 A2SG85.1 A2SG85_METPP Acetoin catabolism regulatory protein 249 5e-64 B2TFJ8.1 B2TFJ8_BURPP GAF modulated sigma54 specific transcripti... 242 7e-62 A1KCD5.1 A1KCD5_AZOSB Sigma-54-dependent transcriptional regulator 239 8e-61 A1ATN2.1 A1ATN2_PELPD GAF modulated sigma54 specific transcripti... 238 1e-60 B9Z004.1 B9Z004_9NEIS Sigma54 specific transcriptional regulator... 237 2e-60 B1J8J4.1 B1J8J4_PSEPW GAF modulated sigma54 specific transcripti... 236 4e-60 A6GSI3.1 A6GSI3_9BURK GAF modulated sigma54 specific transcripti... 236 6e-60 D5N8U4.1 D5N8U4_9BURK GAF modulated sigma54 specific transcripti... 235 9e-60 >D8IRU2.1 D8IRU2_HERSS Sigma54-dependent transcription regulator protein Length = 437 Score = 461 bits (1187), Expect = e-128, Method: Compositional matrix adjust. Identities = 227/229 (99%), Positives = 228/229 (99%) Query: 1 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLI 60 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDL+ERGKRLI Sbjct: 53 MPTTPVEQPLAEAEADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLIERGKRLI 112 Query: 61 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 120 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS Sbjct: 113 DRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFS 172 Query: 121 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 180 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI Sbjct: 173 GALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLI 232 Query: 181 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMAT 229 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQM T Sbjct: 233 CATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQMIT 281 >E1THZ8.1 E1THZ8_BURSG Sigma54 specific transcriptional regulator, Fis family Length = 390 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 121/195 (62%), Positives = 149/195 (76%) Query: 39 IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98 + +L DA M ++ R + LIDR +P+LILGETGTGKEYL+RALHDYS+RR AS ++VN Sbjct: 22 LGRLCGNDATMLAVLSRARLLIDRQLPILILGETGTGKEYLARALHDYSSRRHASMVSVN 81 Query: 99 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158 C SIPE+L ESELFGY +GAFSGAL GMKGKV A GTLFLDEIGDMP A QTRLLR Sbjct: 82 CGSIPENLIESELFGYTRGAFSGALSSGMKGKVVLAHRGTLFLDEIGDMPAAQQTRLLRA 141 Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218 LSEREV P+G+ P+ VD+QLICATHQ++++ + G FREDLYYR+A G++ LP +RER Sbjct: 142 LSEREVTPIGSAEPIAVDLQLICATHQNIESRVEAGTFREDLYYRIAVGIIHLPPVRERH 201 Query: 219 DRRRLVMQMATVTGP 233 DR L+ + P Sbjct: 202 DRAWLLQSILEREAP 216 >A2SG85.1 A2SG85_METPP Acetoin catabolism regulatory protein Length = 666 Score = 249 bits (636), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 126/210 (60%), Positives = 154/210 (73%), Gaps = 5/210 (2%) Query: 15 ADSDVRTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGT 74 AD V ST ARSA S + +D+LA GD M L+ + KRL+DR + +LI GETG+ Sbjct: 324 ADRPVAVSTVARSADS-----FPALDRLAGGDPAMDRLLVQAKRLVDRKVNILIHGETGS 378 Query: 75 GKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQA 134 GKE ++ALH+ S+R R +IAVNCASIPESL ESELFGY G+F+G GMKG + QA Sbjct: 379 GKEVFAKALHESSSRARMPFIAVNCASIPESLIESELFGYTPGSFTGGKSKGMKGLILQA 438 Query: 135 DGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEG 194 GGTLFLDEIGDMPL LQTR LRVLSE EV+PLGA P+PVD +I ATH+DL+ +A G Sbjct: 439 HGGTLFLDEIGDMPLHLQTRFLRVLSESEVLPLGAERPIPVDFTVIAATHRDLRDRVAAG 498 Query: 195 RFREDLYYRVAGGVLRLPALRERSDRRRLV 224 FREDLYYR+ G + LPALRER+D+R L+ Sbjct: 499 TFREDLYYRLCGATMSLPALRERADKRYLI 528 >B2TFJ8.1 B2TFJ8_BURPP GAF modulated sigma54 specific transcriptional regulator, Fis family Length = 663 Score = 242 bits (618), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 125/225 (55%), Positives = 162/225 (72%), Gaps = 6/225 (2%) Query: 9 PLAEAEADSDVRTSTAARSASSRHAPRYRD------IDQLAAGDACMHDLVERGKRLIDR 62 P A ++S TS A S+ +RHAPR D ++ L GDA + ++ R +L R Sbjct: 292 PRYVAPSESLAGTSRAPLSSDARHAPRVADPAPPATLETLDTGDAQVAAILRRVAKLRGR 351 Query: 63 GIPVLILGETGTGKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGA 122 IP+L+LG+TGTGKE+L+RA+H S RR A +IA+NCAS+PE+L E+ELFGY GAF+GA Sbjct: 352 DIPILVLGKTGTGKEWLARAIHHDSPRRDAPFIALNCASLPETLIEAELFGYEDGAFTGA 411 Query: 123 LPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICA 182 G GK+ QADGGTLFLDEIGDMPLA Q RL+RVL ER V+PLG +PVD++++CA Sbjct: 412 KKRGSVGKIVQADGGTLFLDEIGDMPLAQQVRLMRVLQERNVVPLGGTRAIPVDLRIVCA 471 Query: 183 THQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERSDRRRLVMQM 227 TH++L+ +I G FREDLYYR+ G VL LPALRER+D R LV +M Sbjct: 472 THRNLRAMIEAGTFREDLYYRINGLVLTLPALRERTDLRALVTRM 516 >A1KCD5.1 A1KCD5_AZOSB Sigma-54-dependent transcriptional regulator Length = 655 Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 116/201 (57%), Positives = 151/201 (75%) Query: 39 IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98 +++LA D M L+ + RL++R + +L+ GETGTGKE L++ALH+ S+R ++AVN Sbjct: 329 LERLAGNDPQMQRLIAQASRLVNRPVNILVHGETGTGKEVLAKALHESSSRATKPFVAVN 388 Query: 99 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158 CA+IPESL ESELFGY G F+G GM+G +QQADGGTLFLDEIGDMPL LQTRLLRV Sbjct: 389 CAAIPESLIESELFGYTAGTFTGGRSKGMRGLIQQADGGTLFLDEIGDMPLHLQTRLLRV 448 Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218 L+EREV+PLGA PVPV++ ++ A+H+DL+ LIAEG FREDLYYR+ G +L LP LRER Sbjct: 449 LAEREVLPLGAEKPVPVNLTVVAASHRDLRKLIAEGSFREDLYYRLCGAILYLPPLRERR 508 Query: 219 DRRRLVMQMATVTGPASRTAA 239 DR L+ ++ G T+A Sbjct: 509 DRDYLIDRLLAAEGAELGTSA 529 >A1ATN2.1 A1ATN2_PELPD GAF modulated sigma54 specific transcriptional regulator, Fis family Length = 666 Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 119/203 (58%), Positives = 154/203 (75%), Gaps = 1/203 (0%) Query: 23 TAARSASSRHAPRYR-DIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSR 81 + R+A ++ PR R ++QLA D M R R+++RGIP+L+ GETGTGKE +R Sbjct: 330 NSDRAAQPKNRPRARLGLNQLAGADPQMRRNATRALRVMNRGIPILLTGETGTGKEVFAR 389 Query: 82 ALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFL 141 A+H+ S R +IA+NCASIPESL ESELFGY +GAF+GA GM+GK+ QADGGTLFL Sbjct: 390 AIHESSDRAAKPFIALNCASIPESLIESELFGYRQGAFTGAHIKGMRGKILQADGGTLFL 449 Query: 142 DEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLY 201 DEIGDMPL+LQTRLLRVL+E+EV+PLG+ PV VD+ +ICAT ++L+ L+ +GRFREDLY Sbjct: 450 DEIGDMPLSLQTRLLRVLAEKEVLPLGSESPVRVDLNVICATLRNLEELVRDGRFREDLY 509 Query: 202 YRVAGGVLRLPALRERSDRRRLV 224 YR+ G + LP LRER DR L+ Sbjct: 510 YRLNGITITLPPLREREDRDMLI 532 >B9Z004.1 B9Z004_9NEIS Sigma54 specific transcriptional regulator, Fis family Length = 660 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/232 (54%), Positives = 163/232 (70%), Gaps = 4/232 (1%) Query: 20 RTSTAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYL 79 R + +A + S P +D+LA D M ++E+ KRL+++G+ +LI GETGTGKE Sbjct: 322 RPAVSATARESVPLPACPALDRLAGDDRQMQRILEQSKRLVNKGVNILIHGETGTGKEVF 381 Query: 80 SRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTL 139 ++ALH+ S R +IAVNCA+IP+SL ESELFGY G F+GA GMKG +QQ+D GTL Sbjct: 382 AKALHESSERAARPFIAVNCAAIPDSLIESELFGYAPGTFTGARSKGMKGLIQQSDRGTL 441 Query: 140 FLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFRED 199 FLDEIGDMPL LQTRLLRVLSEREV+PLGA PV V++ +I A+H+DL+ LIA G+FRED Sbjct: 442 FLDEIGDMPLHLQTRLLRVLSEREVLPLGADKPVRVELTVIAASHRDLRKLIAGGQFRED 501 Query: 200 LYYRVAGGVLRLPALRERSDRR----RLVMQMATVTGPASRTAAXAMAVGID 247 LYYR+ G L LP LRER D+R RL + A +G + A A+A +D Sbjct: 502 LYYRLCGATLFLPPLRERQDKRYLIERLFAEEAAQSGQSPVLAEAALACLMD 553 >B1J8J4.1 B1J8J4_PSEPW GAF modulated sigma54 specific transcriptional regulator, Fis family Length = 637 Score = 236 bits (603), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 115/186 (61%), Positives = 146/186 (78%) Query: 39 IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSRALHDYSARRRASWIAVN 98 ++QLA D + V R ++++D+ I +L+ GETGTGKE +RALH S R ++A+N Sbjct: 327 LEQLAGQDVQLQQDVRRLRKVLDKDIAILLNGETGTGKEAFARALHQVSQRHAKPFVALN 386 Query: 99 CASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFLDEIGDMPLALQTRLLRV 158 CA+IPESL ESELFGY G+F+GA GMKGK++QA+GGTLFLDEIGDMP LQTRLLRV Sbjct: 387 CAAIPESLIESELFGYRAGSFTGASRKGMKGKLEQANGGTLFLDEIGDMPAHLQTRLLRV 446 Query: 159 LSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLYYRVAGGVLRLPALRERS 218 L+ERE++PLGA PV +D+Q+I ATHQDL+ +I E RFREDLYYR+ G +RLPALRERS Sbjct: 447 LAERELVPLGAETPVLLDIQVISATHQDLQAMIGEKRFREDLYYRLCGMRMRLPALRERS 506 Query: 219 DRRRLV 224 DRR L+ Sbjct: 507 DRRELI 512 >A6GSI3.1 A6GSI3_9BURK GAF modulated sigma54 specific transcriptional regulator, Fis family protein Length = 796 Score = 236 bits (601), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 109/206 (52%), Positives = 157/206 (76%) Query: 22 STAARSASSRHAPRYRDIDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGTGKEYLSR 81 +T + + + +P + L GD + ++E+ ++ID+ IP+LILGETGTGKE L++ Sbjct: 335 ATQKANTTCQKSPHLSSLKYLNTGDPQVAKIIEKVCKVIDKDIPILILGETGTGKEILAQ 394 Query: 82 ALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQADGGTLFL 141 A+H+ S R ++AVNCASIPE+L ESELFGY GAF+GA G +G++ QA+GGTLFL Sbjct: 395 AIHNDSPRHDKPFVAVNCASIPETLIESELFGYEDGAFTGAKKKGSQGRILQANGGTLFL 454 Query: 142 DEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEGRFREDLY 201 DEIGDMP++LQ RLLRVL ER V PLG++ +PV++Q+ICATH++L+ IA G+FREDLY Sbjct: 455 DEIGDMPISLQARLLRVLQERVVTPLGSQKSIPVNLQVICATHRNLRDQIAAGQFREDLY 514 Query: 202 YRVAGGVLRLPALRERSDRRRLVMQM 227 YR+ G V+R+PALRER+D ++++ ++ Sbjct: 515 YRLHGLVVRIPALRERTDLQKIIQRI 540 >D5N8U4.1 D5N8U4_9BURK GAF modulated sigma54 specific transcriptional regulator, Fis family Length = 670 Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 118/213 (55%), Positives = 156/213 (73%), Gaps = 6/213 (2%) Query: 21 TSTAARSASSRHAPRYRD------IDQLAAGDACMHDLVERGKRLIDRGIPVLILGETGT 74 TS A S +RH PR + ++ L GDA + ++ R +L R IP+L+LG+TGT Sbjct: 303 TSRAPLSGGARHTPRTAEPAPLATLETLDTGDAQVAAILRRVAKLRGRDIPILVLGKTGT 362 Query: 75 GKEYLSRALHDYSARRRASWIAVNCASIPESLAESELFGYCKGAFSGALPGGMKGKVQQA 134 GKE+L+RA+H S RR A +IA+NCAS+P++L E+ELFGY GAF+GA G GK+ QA Sbjct: 363 GKEWLARAIHHDSPRRAAPFIALNCASLPDTLIEAELFGYEDGAFTGAKKRGSVGKIVQA 422 Query: 135 DGGTLFLDEIGDMPLALQTRLLRVLSEREVIPLGARHPVPVDVQLICATHQDLKTLIAEG 194 DGGTLFLDEIGDMPLA Q RL+RVL ER V+PLGA +PVD++++CATH++L+ +I +G Sbjct: 423 DGGTLFLDEIGDMPLAQQVRLMRVLQERTVVPLGATRAIPVDLRIVCATHRNLRAMIEDG 482 Query: 195 RFREDLYYRVAGGVLRLPALRERSDRRRLVMQM 227 FREDLYYR+ G V+ LPALRER+D LV +M Sbjct: 483 TFREDLYYRINGLVVTLPALRERTDLHALVTRM 515