BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0233.p (126 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQV7.1 D8IQV7_HERSS Chemotaxis response regulator protein 254 2e-66 D3RNL9.1 D3RNL9_ALLVD Response regulator receiver protein 187 5e-46 F1VZR5.1 F1VZR5_9BURK Chemotaxis regulator-transmits chemorecept... 182 1e-44 C5AK80.1 C5AK80_BURGB Response regulator receiver protein 179 8e-44 E1MKX1.1 E1MKX1_9GAMM Response regulator receiver protein 162 1e-38 Q2RRW5.1 Q2RRW5_RHORT Response regulator receiver domain protein... 150 8e-35 C7RJ86.1 C7RJ86_ACCPU Response regulator receiver protein 149 2e-34 A6W950.1 A6W950_KINRD Response regulator receiver protein 147 5e-34 C3NQQ1.1 C3NQQ1_VIBCJ Chemotaxis regulator-transmits chemorecept... 145 3e-33 C3LM90.1 C3LM90_VIBCM Chemotaxis protein CheY 145 3e-33 >D8IQV7.1 D8IQV7_HERSS Chemotaxis response regulator protein Length = 126 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 126/126 (100%), Positives = 126/126 (100%) Query: 1 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP 60 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP Sbjct: 1 MATSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMP 60 Query: 61 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR Sbjct: 61 NMDGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVR 120 Query: 121 QVLPGV 126 QVLPGV Sbjct: 121 QVLPGV 126 >D3RNL9.1 D3RNL9_ALLVD Response regulator receiver protein Length = 124 Score = 187 bits (475), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 86/122 (70%), Positives = 105/122 (86%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 SK+I +VDDSATM+MS+++ LEMAGF V+TA DGV+AL K+++G KPDL+ITDINMPNM Sbjct: 2 SKTILVVDDSATMVMSLKASLEMAGFKVETAGDGVQALTKLKSGVKPDLIITDINMPNMG 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G++ IRN R LPG RF PIL LTTESQ KRDE KK GATGWLVKPVGG+DL+K+++QVL Sbjct: 62 GMDFIRNARVLPGLRFTPILALTTESQQAKRDEAKKLGATGWLVKPVGGSDLIKVIKQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >F1VZR5.1 F1VZR5_9BURK Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY Length = 124 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 88/122 (72%), Positives = 102/122 (83%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 +K+I +VDDSATMLMS+++ LE+ GF V TA DGV AL K+Q G KPDL+ITDINMPNM Sbjct: 2 AKTILVVDDSATMLMSLKNSLEITGFIVITAADGVIALGKLQKGPKPDLIITDINMPNMG 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+E I RALPGFRFIPIL LTTESQ +RDE KK GATGWLVKPVGGADL+KI++QVL Sbjct: 62 GIEFIGKARALPGFRFIPILALTTESQQARRDEAKKLGATGWLVKPVGGADLIKIIKQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >C5AK80.1 C5AK80_BURGB Response regulator receiver protein Length = 125 Score = 179 bits (455), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 86/124 (69%), Positives = 102/124 (82%), Gaps = 1/124 (0%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAG-FAVDTAEDGVKALKKMQAGYKPDLLITDINMPNM 62 SKSI LVDDS TMLMS+R LEMAG +V+TA DGV+ALK++++G +PDL+ITDINMPNM Sbjct: 2 SKSILLVDDSVTMLMSLRGSLEMAGGLSVETASDGVQALKRLRSGPRPDLIITDINMPNM 61 Query: 63 DGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQV 122 DGLELIR R LPG RF P+L LTTESQ +RDE K GATGWLVKPV A LL++++QV Sbjct: 62 DGLELIRQARQLPGLRFTPLLVLTTESQQARRDEAKALGATGWLVKPVATAALLQVIKQV 121 Query: 123 LPGV 126 LPGV Sbjct: 122 LPGV 125 >E1MKX1.1 E1MKX1_9GAMM Response regulator receiver protein Length = 124 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 75/122 (61%), Positives = 98/122 (80%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 +K+I +VDDSA + SV HL+ GF V+TA+DG+ AL ++AG KPDL+ITDINMPNM+ Sbjct: 2 AKTILVVDDSALIRTSVTQHLKNGGFTVETADDGLNALNMLKAGLKPDLMITDINMPNMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+ELI++ RALP FRF+PIL +TTESQ RDE K+ GATGW+VKPVGG L+ I+++VL Sbjct: 62 GIELIQSTRALPEFRFMPILVMTTESQQTMRDEAKQLGATGWVVKPVGGELLMSIIKKVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >Q2RRW5.1 Q2RRW5_RHORT Response regulator receiver domain protein (CheY) Length = 124 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 71/122 (58%), Positives = 92/122 (75%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 + +IFLVDDSAT+LMS+ + L AGF + A G AL +++ G KP L+ITDI+MP M+ Sbjct: 2 TSTIFLVDDSATVLMSMETILRRAGFTIAQASSGEDALAQLEKGLKPALIITDIHMPGMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G++LIR VR + GF+FIPIL +TTESQ KRDE + A ATGWLVKPV DLLK+V+Q+L Sbjct: 62 GIDLIRKVRTMAGFQFIPILVVTTESQQSKRDEARAAKATGWLVKPVQPDDLLKVVKQIL 121 Query: 124 PG 125 P Sbjct: 122 PN 123 >C7RJ86.1 C7RJ86_ACCPU Response regulator receiver protein Length = 122 Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 72/120 (60%), Positives = 92/120 (76%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 +K+IFLVDDSAT+L+SV S L AGFAV+ A + +ALKK AG K DLLITD+NMP M+ Sbjct: 2 AKTIFLVDDSATILLSVSSILGKAGFAVEKAANAEEALKKFSAGVKVDLLITDLNMPGMN 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+ELI+ VRALP +RF+PIL LTTESQ ++ E K AGA+GW+VKP DLL ++ V+ Sbjct: 62 GIELIKKVRALPAYRFLPILFLTTESQQSRKVEAKAAGASGWIVKPATADDLLNTIKLVI 121 >A6W950.1 A6W950_KINRD Response regulator receiver protein Length = 122 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 69/120 (57%), Positives = 91/120 (75%), Gaps = 1/120 (0%) Query: 6 SIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMDGL 65 ++ LVDDS TMLMS++S L G AV+TA DG +AL+++Q+G+KPDL+I+D+NMP +DG+ Sbjct: 3 TVMLVDDSPTMLMSIKSILTKQGLAVETAADGQEALERVQSGFKPDLVISDVNMPRLDGI 62 Query: 66 ELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVLPG 125 +R R G RF PIL LTTES+ KRDE K AGATGWLVKPV L+ ++RQV+PG Sbjct: 63 GFVRQARR-AGLRFTPILMLTTESEQTKRDEAKAAGATGWLVKPVQADALMTVIRQVVPG 121 >C3NQQ1.1 C3NQQ1_VIBCJ Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY Length = 126 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/122 (55%), Positives = 91/122 (74%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 SKSI +VDDS+T+LMSV + L GF V+ A+DGV+A +++ G K +L+ITDINMP MD Sbjct: 2 SKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMD 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+ELI +RA+ +RF PIL LTTE + KR+E + GATG+LVKPV G L +++QVL Sbjct: 62 GIELISKIRAIASYRFTPILVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123 >C3LM90.1 C3LM90_VIBCM Chemotaxis protein CheY Length = 126 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 68/122 (55%), Positives = 91/122 (74%) Query: 4 SKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNMD 63 SKSI +VDDS+T+LMSV + L GF V+ A+DGV+A +++ G K +L+ITDINMP MD Sbjct: 2 SKSILIVDDSSTVLMSVDAMLSKLGFQVEKAKDGVEAETRLKGGLKVNLIITDINMPRMD 61 Query: 64 GLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKPVGGADLLKIVRQVL 123 G+ELI +RA+ +RF PIL LTTE + KR+E + GATG+LVKPV G L +++QVL Sbjct: 62 GIELISKIRAIASYRFTPILVLTTEQEQAKRNEARAKGATGYLVKPVTGDQLKAVIQQVL 121 Query: 124 PG 125 PG Sbjct: 122 PG 123