BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0230.p (123 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQV5.1 D8IQV5_HERSS Chemotaxis CheY protein 248 2e-64 E1MKW8.1 E1MKW8_9GAMM Response regulator receiver protein 179 1e-43 D3RNL6.1 D3RNL6_ALLVD Response regulator receiver protein 167 5e-40 C5AK83.1 C5AK83_BURGB Response regulator receiver domain protein... 166 1e-39 F1VZR2.1 F1VZR2_9BURK Chemotaxis regulator-transmits chemorecept... 164 4e-39 Q20XK6.1 Q20XK6_RHOPB Response regulator receiver domain protein... 134 4e-30 C9Q4S5.1 C9Q4S5_9VIBR Chemotaxis regulator CheY 132 1e-29 F2IQH9.1 F2IQH9_VIBCH Chemotaxis regulator-transmits chemorecept... 132 2e-29 D0HW73.1 D0HW73_VIBCH Chemotaxis regulator CheY 132 2e-29 D0HR75.1 D0HR75_VIBCH Chemotaxis regulator CheY 132 2e-29 >D8IQV5.1 D8IQV5_HERSS Chemotaxis CheY protein Length = 123 Score = 248 bits (634), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 123/123 (100%), Positives = 123/123 (100%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG Sbjct: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 Query: 61 YGFLRQLRGEPLVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVGE 120 YGFLRQLRGEPLVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVGE Sbjct: 61 YGFLRQLRGEPLVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVGE 120 Query: 121 GGQ 123 GGQ Sbjct: 121 GGQ 123 >E1MKW8.1 E1MKW8_9GAMM Response regulator receiver protein Length = 123 Score = 179 bits (454), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/120 (70%), Positives = 102/120 (85%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MKRIL+VDDAATVR+YHRNILEAA Y V+EAVNGIE +EKAL P+DLY+VDINMPKLDG Sbjct: 1 MKRILVVDDAATVRLYHRNILEAAGYAVDEAVNGIEAMEKALQTPFDLYVVDINMPKLDG 60 Query: 61 YGFLRQLRGEPLVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVGE 120 YGFLR++R + + PAIM+STE+++NDR AYRAGAN YL+KPV P LL ++RLL+ E Sbjct: 61 YGFLREIRSQEIAQPPAIMVSTEAESNDRHRAYRAGANIYLIKPVKPDGLLTYIRLLLAE 120 >D3RNL6.1 D3RNL6_ALLVD Response regulator receiver protein Length = 124 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 78/119 (65%), Positives = 98/119 (82%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MKRIL++DDAATVR+YHR ILE+A + V EAVNG+E LE+ + P+DLY+VDINMPKLDG Sbjct: 1 MKRILVIDDAATVRLYHRGILESAGFEVSEAVNGLEALERVVEGPFDLYLVDINMPKLDG 60 Query: 61 YGFLRQLRGEPLVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVG 119 YGFLR+LR + + APAIM+STE++ ND+ LAY GAN YL+KP PAQLL HV+ L+G Sbjct: 61 YGFLRELRAKDIPQAPAIMVSTEAEDNDQRLAYACGANLYLIKPTKPAQLLAHVQTLLG 119 >C5AK83.1 C5AK83_BURGB Response regulator receiver domain protein (CheY-like) Length = 123 Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 79/122 (64%), Positives = 98/122 (80%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MKR+L++DDA+TVR YHR+ILE+A + VEEA+NGIE LEKAL PYDLY+VD+NMPKLDG Sbjct: 1 MKRVLIIDDASTVRFYHRSILESAGHAVEEAINGIEALEKALCAPYDLYLVDVNMPKLDG 60 Query: 61 YGFLRQLRGEPLVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVGE 120 YGFLR+LR +P+V APA+M+STE+ D AY AGAN YLVKP +LL +V LL+GE Sbjct: 61 YGFLRELRNQPIVQAPALMVSTEADPIDEHKAYAAGANFYLVKPAKAEELLAYVGLLLGE 120 Query: 121 GG 122 Sbjct: 121 NA 122 >F1VZR2.1 F1VZR2_9BURK Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY Length = 124 Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 78/121 (64%), Positives = 100/121 (82%), Gaps = 1/121 (0%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MKRIL+VDDAATVRMYHR+ILE A Y V+EA+NGIE LEKAL+ YDLY+VD+NMPKLDG Sbjct: 1 MKRILIVDDAATVRMYHRSILEDAGYEVDEAINGIEALEKALNATYDLYLVDVNMPKLDG 60 Query: 61 YGFLRQLRGEPLV-HAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVG 119 Y F+R+LRG ++ APA+MISTE++ +D+ A+ AGAN Y++KP P L+ HVRLL+G Sbjct: 61 YSFVRELRGHAMIPQAPAVMISTEAKTSDQTKAFEAGANLYIIKPTRPDLLVAHVRLLLG 120 Query: 120 E 120 + Sbjct: 121 D 121 >Q20XK6.1 Q20XK6_RHOPB Response regulator receiver domain protein (CheY-like) Length = 134 Score = 134 bits (338), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/121 (55%), Positives = 87/121 (71%), Gaps = 2/121 (1%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 ++RIL+VDD++ VR+Y+R LE A + VE+A+NG+E +EK L Q +DL IVD+NMP++DG Sbjct: 12 LRRILVVDDSSLVRLYYRAALEKAGFAVEQAINGLEAMEKCLAQRFDLVIVDVNMPRMDG 71 Query: 61 YGFLRQLRGEP--LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLV 118 FLR LRG + PA+MISTE+ DR A AGAN YLVKPV+ A LL HV LL Sbjct: 72 LSFLRALRGSAAEIASLPALMISTEAGQQDRDDARAAGANFYLVKPVSEADLLSHVALLA 131 Query: 119 G 119 G Sbjct: 132 G 132 >C9Q4S5.1 C9Q4S5_9VIBR Chemotaxis regulator CheY Length = 123 Score = 132 bits (333), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 61/120 (50%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MK++++VDDA+TVRMYH+ +LE + EA NG+E LE+AL P DL+++DINMPK+DG Sbjct: 1 MKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMPVDLFLIDINMPKMDG 60 Query: 61 YGFLRQLRGEP-LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVG 119 + +R++R P L P +MISTESQ +DR GAN Y+VKPV P +L V L++G Sbjct: 61 FTLVREIRCRPELASIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQTVTLMLG 120 >F2IQH9.1 F2IQH9_VIBCH Chemotaxis regulator-transmits chemoreceptor signals to flagelllar motor components CheY Length = 123 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MK++++VDDA+TVRMYH+ +LE + EA NG+E LE+AL P DL++VDINMPK+DG Sbjct: 1 MKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMPVDLFLVDINMPKMDG 60 Query: 61 YGFLRQLRGEP-LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVG 119 + +R++R P L P +MISTESQ +DR GAN Y+VKPV P +L V L++G Sbjct: 61 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQTVTLMLG 120 >D0HW73.1 D0HW73_VIBCH Chemotaxis regulator CheY Length = 123 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MK++++VDDA+TVRMYH+ +LE + EA NG+E LE+AL P DL++VDINMPK+DG Sbjct: 1 MKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMPVDLFLVDINMPKMDG 60 Query: 61 YGFLRQLRGEP-LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVG 119 + +R++R P L P +MISTESQ +DR GAN Y+VKPV P +L V L++G Sbjct: 61 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQTVTLMLG 120 >D0HR75.1 D0HR75_VIBCH Chemotaxis regulator CheY Length = 123 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 62/120 (51%), Positives = 85/120 (70%), Gaps = 1/120 (0%) Query: 1 MKRILLVDDAATVRMYHRNILEAAHYLVEEAVNGIEGLEKALHQPYDLYIVDINMPKLDG 60 MK++++VDDA+TVRMYH+ +LE + EA NG+E LE+AL P DL++VDINMPK+DG Sbjct: 1 MKKVMVVDDASTVRMYHKALLEEIGIFILEASNGVEALERALEMPVDLFLVDINMPKMDG 60 Query: 61 YGFLRQLRGEP-LVHAPAIMISTESQANDRVLAYRAGANDYLVKPVTPAQLLMHVRLLVG 119 + +R++R P L P +MISTESQ +DR GAN Y+VKPV P +L V L++G Sbjct: 61 FTLVREIRCRPELAGIPTVMISTESQESDRQQGIHMGANLYMVKPVNPEELQQTVTLMLG 120