BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0148.p (240 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQM3.1 D8IQM3_HERSS Ferredoxin [4Fe-4S]-type protein 478 e-133 A6SVW0.1 A6SVW0_JANMA Electron transport complex protein RnfB 342 4e-92 A4G3A6.1 A4G3A6_HERAR Putative electron transport complex, ferre... 329 2e-88 F1W1F8.1 F1W1F8_9BURK Putative NADH:ubiquinone oxidoreductase, s... 288 6e-76 Q473K7.1 Q473K7_CUPPJ Electron transport complex, RnfABCDGE type... 285 3e-75 Q0KCI2.1 Q0KCI2_CUPNH Predicted NADH:ubiquinone oxidoreductase,s... 280 1e-73 C0INR4.1 C0INR4_9BACT Iron-sulfur cluster-binding protein 278 7e-73 D8NW29.1 D8NW29_RALSO 4Fe-4S ferredoxin, iron-sulphur binding 275 4e-72 A4JGL1.1 A4JGL1_BURVG Electron transport complex, RnfABCDGE type... 274 9e-72 D5W5B8.1 D5W5B8_BURSC Electron transport complex, RnfABCDGE type... 271 5e-71 >D8IQM3.1 D8IQM3_HERSS Ferredoxin [4Fe-4S]-type protein Length = 240 Score = 478 bits (1229), Expect = e-133, Method: Compositional matrix adjust. Identities = 239/240 (99%), Positives = 240/240 (100%) Query: 1 VPPSAITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVAR 60 +PPSAITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVAR Sbjct: 1 MPPSAITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVAR 60 Query: 61 LAQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDA 120 LAQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDA Sbjct: 61 LAQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDA 120 Query: 121 LCTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDA 180 LCTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDA Sbjct: 121 LCTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDA 180 Query: 181 RLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPTDSEQA 240 RLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPTDSEQA Sbjct: 181 RLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPTDSEQA 240 >A6SVW0.1 A6SVW0_JANMA Electron transport complex protein RnfB Length = 233 Score = 342 bits (876), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 177/230 (76%), Positives = 203/230 (88%) Query: 1 VPPSAITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVAR 60 +P + S SLAD+LEDLLPQTQCTKCGYPACRPYAEAIA+G A+YNQCPPGG EGVAR Sbjct: 1 MPAVSPPSQKSLADQLEDLLPQTQCTKCGYPACRPYAEAIADGSANYNQCPPGGIEGVAR 60 Query: 61 LAQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDA 120 LA LLG+PVIP+NP +G E+PR +AVIDE++CIGCTLCIQACPVDAI GAAKQMHT+++ Sbjct: 61 LAHLLGKPVIPINPVNGHERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVND 120 Query: 121 LCTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDA 180 LCTGCDLCVAPCPVDCI+MVEVTPG+TGW AW Q QAD ARARH +RTQRL+R+KEENDA Sbjct: 121 LCTGCDLCVAPCPVDCIAMVEVTPGKTGWDAWSQAQADDARARHDFRTQRLQREKEENDA 180 Query: 181 RLAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQ 230 RLAAKAAAKL+ V+A + EE+AE ARKKAIIQAA+ERARLKK QAE+ Sbjct: 181 RLAAKAAAKLQAVQAETPASEEEKAEQARKKAIIQAAIERARLKKEQAEK 230 >A4G3A6.1 A4G3A6_HERAR Putative electron transport complex, ferredoxin subunit Length = 239 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 171/229 (74%), Positives = 202/229 (88%), Gaps = 2/229 (0%) Query: 4 SAITS--SASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARL 61 SA++S SLAD+LEDLLPQTQCTKCGYPACRPYAEA+A+GRASYNQCPPGG EGVARL Sbjct: 8 SAVSSPTEKSLADQLEDLLPQTQCTKCGYPACRPYAEAMADGRASYNQCPPGGIEGVARL 67 Query: 62 AQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDAL 121 A++LG+ VIP+NP +G E+PR +AVIDE++CIGCTLCIQACPVDAI GAAKQMHT++ L Sbjct: 68 ARVLGKKVIPINPVNGVERPRPVAVIDESLCIGCTLCIQACPVDAIVGAAKQMHTIVTDL 127 Query: 122 CTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDAR 181 CTGCDLCVAPCPVDCI+MVE TPG+TGW AW Q +ADAARARH +RT RL+R+KEEN+AR Sbjct: 128 CTGCDLCVAPCPVDCIAMVEYTPGKTGWDAWSQAEADAARARHDFRTLRLQREKEENEAR 187 Query: 182 LAAKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQ 230 LAAKAAAKL+ +++ + EE+ E ARKKAIIQAA+ERARLKK QAE+ Sbjct: 188 LAAKAAAKLQALQSETPLSEEEKNEQARKKAIIQAAIERARLKKEQAEK 236 >F1W1F8.1 F1W1F8_9BURK Putative NADH:ubiquinone oxidoreductase, subunit RnfB Length = 242 Score = 288 bits (736), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 156/215 (72%), Positives = 178/215 (82%), Gaps = 1/215 (0%) Query: 11 SLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQLLGRPVI 70 SLADR+ED LPQTQCTKCGY CRPYAEAIA+G A NQCPPGGQEG+ RLA LL RPVI Sbjct: 21 SLADRIEDALPQTQCTKCGYAGCRPYAEAIADGSAGINQCPPGGQEGIVRLASLLDRPVI 80 Query: 71 PLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCTGCDLCVA 130 LNP HG E+PR +A+IDEA+CIGCTLCIQACPVDAI GA KQMHT++ LCTGCDLCVA Sbjct: 81 ALNPVHGIERPRPVAIIDEALCIGCTLCIQACPVDAILGAPKQMHTILADLCTGCDLCVA 140 Query: 131 PCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLAAKAAAKL 190 PCPVDCI+MV VT TGWQAW ++QAD ARARH +R RL R++ +NDARL AKAAAKL Sbjct: 141 PCPVDCIAMVAVT-TTTGWQAWTEQQADEARARHDFRAARLLRERRDNDARLLAKAAAKL 199 Query: 191 KEVEAAAAGTPEEQAELARKKAIIQAAMERARLKK 225 KEVE+A + + AE RKKAIIQAA+ERAR+K+ Sbjct: 200 KEVESAPTLSAADSAERDRKKAIIQAAIERARIKR 234 >Q473K7.1 Q473K7_CUPPJ Electron transport complex, RnfABCDGE type, B subunit Length = 248 Score = 285 bits (730), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 155/235 (65%), Positives = 186/235 (79%) Query: 6 ITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQLL 65 ++S+ +LADRLE LLPQTQCTKCG+ CRPYAEA+A G A+ N+CPPGG EG+ RL+ +L Sbjct: 1 MSSTQTLADRLEALLPQTQCTKCGFNGCRPYAEAMASGEAASNRCPPGGAEGIRRLSAVL 60 Query: 66 GRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCTGC 125 G +PL+PE G EQPR +A IDE++CIGCTLCIQACPVDAIAGAAKQMHT+I LCTGC Sbjct: 61 GTGALPLDPERGVEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQMHTIIPELCTGC 120 Query: 126 DLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLAAK 185 DLCV PCPVDCI MV VT RTGW AW QEQADAA AR+ R QRL R++EENDARLAAK Sbjct: 121 DLCVPPCPVDCIDMVPVTGERTGWDAWTQEQADAAHARYVARKQRLVREREENDARLAAK 180 Query: 186 AAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPTDSEQA 240 AAAKL+ ++A AA + E+A RK+AIIQAA+ERAR K+ A ++ D+ A Sbjct: 181 AAAKLEALQAEAAQSETERAAQERKRAIIQAAIERARQKQQAARSSTATPDNGSA 235 >Q0KCI2.1 Q0KCI2_CUPNH Predicted NADH:ubiquinone oxidoreductase,subunit RnfB EC=1.6.5.- Length = 269 Score = 280 bits (716), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 156/229 (68%), Positives = 178/229 (77%), Gaps = 4/229 (1%) Query: 11 SLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQLLGRPVI 70 SLADR+E LLPQTQCTKCG+ CRPYAEA+A G A+ N+CPPGG EG+ RLA LG + Sbjct: 7 SLADRIEALLPQTQCTKCGFNGCRPYAEAMASGEAACNRCPPGGAEGIVRLAAALGTEPL 66 Query: 71 PLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCTGCDLCVA 130 PL+PE GSEQPR +A IDE++CIGCTLCIQACPVDAIAGAAKQMHTVI CTGCDLCVA Sbjct: 67 PLDPERGSEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQMHTVIPDWCTGCDLCVA 126 Query: 131 PCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLAAKAAAKL 190 PCPVDCI MV VT RTGW AW Q QADAA AR+ R RL R++EENDARLAAKAAAKL Sbjct: 127 PCPVDCIDMVPVTGARTGWAAWSQAQADAAHARYLARNARLVREREENDARLAAKAAAKL 186 Query: 191 KEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPTDSEQ 239 V+A A E+A RK+AIIQAA+ERAR Q +QA+ P ++E Sbjct: 187 AAVQAEAPENDAERAAQERKRAIIQAAIERAR----QKQQAAQPRNTEN 231 >C0INR4.1 C0INR4_9BACT Iron-sulfur cluster-binding protein Length = 245 Score = 278 bits (710), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 154/230 (66%), Positives = 177/230 (76%), Gaps = 1/230 (0%) Query: 6 ITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQLL 65 + ++ SLADR+ED+LPQTQCTKCGY CRPYAEAIA G A NQCPPGG EG+ARL+ + Sbjct: 1 MPTTQSLADRIEDVLPQTQCTKCGYDGCRPYAEAIAAGAAGINQCPPGGAEGIARLSSVT 60 Query: 66 GRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCTGC 125 GR VIPLNP +G E+PR +A IDE++CIGCTLCIQACPVDAI GAAK MHTV+ LCTGC Sbjct: 61 GRKVIPLNPVNGLERPRAVAYIDESLCIGCTLCIQACPVDAIIGAAKLMHTVVPDLCTGC 120 Query: 126 DLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLAAK 185 DLCV PCPVDCI M VT TGW AWRQ ADAAR RH +R RL+R+K+ENDARLAAK Sbjct: 121 DLCVNPCPVDCIVMHPVTE-TTGWNAWRQADADAARERHDFRAFRLKREKDENDARLAAK 179 Query: 186 AAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASHPT 235 A AK+ V A +AE RK+AII AAMERARLKK +A QA+ T Sbjct: 180 AEAKMAAVHALDPADAAGEAEKERKRAIIAAAMERARLKKEEAAQAASET 229 >D8NW29.1 D8NW29_RALSO 4Fe-4S ferredoxin, iron-sulphur binding Length = 268 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 152/230 (66%), Positives = 174/230 (75%), Gaps = 4/230 (1%) Query: 6 ITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQLL 65 ++ + SLADRLEDLLPQTQCTKCGY CRPYAEA+A G A N+CPPGG G+ RL++ L Sbjct: 2 VSLAPSLADRLEDLLPQTQCTKCGYNGCRPYAEAMARGEALPNRCPPGGAAGIRRLSEAL 61 Query: 66 GR--PVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCT 123 GR P++ L+PEHG EQPR LAVID CIGCTLCIQACPVDAI GA K MH V++ CT Sbjct: 62 GRTGPLLALDPEHGVEQPRALAVIDPERCIGCTLCIQACPVDAIVGAPKAMHVVLEDWCT 121 Query: 124 GCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLA 183 GCDLCVAPCPVDCI MV VT RTGW AW Q QAD ARAR+ +R +RL R+K EN+ARLA Sbjct: 122 GCDLCVAPCPVDCIDMVSVTGERTGWDAWSQAQADLARARYVFRNERLAREKAENEARLA 181 Query: 184 AKAAAKLKEVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQAEQASH 233 KAAAKL V A E+A ARK+AIIQAA+ERAR K QAE A+ Sbjct: 182 EKAAAKLAAVNAEQPDDEAERAAQARKQAIIQAAIERARQK--QAEMAAR 229 >A4JGL1.1 A4JGL1_BURVG Electron transport complex, RnfABCDGE type, B subunit Length = 313 Score = 274 bits (700), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 126/163 (77%), Positives = 140/163 (85%) Query: 2 PPSAITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARL 61 P +T S +LADRLEDLLPQTQCTKCGY CRPYAEAIA G A+YNQCPPGG EG+ARL Sbjct: 20 PVVTVTDSKTLADRLEDLLPQTQCTKCGYDGCRPYAEAIAAGNANYNQCPPGGAEGIARL 79 Query: 62 AQLLGRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDAL 121 A LLG+PVIPLNP +G+E PR +A IDE++CIGCTLC+QACPVDAI GA KQMHT+I+ L Sbjct: 80 ASLLGKPVIPLNPVNGAEHPRAIAFIDESLCIGCTLCLQACPVDAIIGAPKQMHTIIEPL 139 Query: 122 CTGCDLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARH 164 CTGCDLCVAPCPVDCI+MV VT RTGW AW QEQADAARARH Sbjct: 140 CTGCDLCVAPCPVDCIAMVPVTGDRTGWDAWSQEQADAARARH 182 >D5W5B8.1 D5W5B8_BURSC Electron transport complex, RnfABCDGE type, B subunit Length = 301 Score = 271 bits (694), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 150/250 (60%), Positives = 176/250 (70%), Gaps = 16/250 (6%) Query: 6 ITSSASLADRLEDLLPQTQCTKCGYPACRPYAEAIAEGRASYNQCPPGGQEGVARLAQLL 65 +T +LADR+EDLLPQTQCTKCGYPACRPYAEA+A G A+YNQCPPGG EG+ARLA LL Sbjct: 1 MTDVKTLADRIEDLLPQTQCTKCGYPACRPYAEAVASGEANYNQCPPGGAEGIARLAALL 60 Query: 66 GRPVIPLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQMHTVIDALCTGC 125 G+PVIPLN +G E+PR LAVIDE VCIGCTLC+QACPVDAI GA KQMHTVI LCTGC Sbjct: 61 GKPVIPLNSANGVERPRPLAVIDEQVCIGCTLCMQACPVDAIVGAPKQMHTVIAELCTGC 120 Query: 126 DLCVAPCPVDCISMVEVTPGRTGWQAWRQEQADAARARHAWRTQRLRRDKEENDARLAAK 185 DLCV PCPVDCI+M+ VT TGW AW Q +ADAARARH RL R+++ +AR AA+ Sbjct: 121 DLCVPPCPVDCIAMLPVTGEATGWDAWSQSEADAARARHNRHDSRLARERDAAEARAAAR 180 Query: 186 AAAKLK---------------EVEAAAAGTPEEQAELARKKAIIQAAMERARLKKLQ-AE 229 AA + A P A+K+AIIQAA+ERAR KK + A Sbjct: 181 RAASTSGPVAAASGAVGASGATAPSEAPTAPIADDAEAKKRAIIQAALERARKKKEELAA 240 Query: 230 QASHPTDSEQ 239 + P ++E Sbjct: 241 KGQGPLNTEN 250