BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0144.p (117 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQ84.1 D8IQ84_HERSS Periplasmic cytochrome c553 protein 236 6e-61 F1W2M0.1 F1W2M0_9BURK Putative cytochrome c 148 2e-34 A4G3A2.1 A4G3A2_HERAR Putative cytochrome c 136 1e-30 A6SVV6.1 A6SVV6_JANMA Cytochrome 134 3e-30 B1XUV5.1 B1XUV5_POLNS Cytochrome c class I 127 5e-28 A4SXB0.1 A4SXB0_POLSQ Cytochrome c, class I 122 2e-26 E5UE86.1 E5UE86_ALCXX Cytochrome 117 5e-25 D8NW35.1 D8NW35_RALSO Putative cytochrome c, class IC 116 1e-24 E5AT73.1 E5AT73_BURRH Cytochrome c-554(548) 114 7e-24 B5SMK8.1 B5SMK8_RALSO Periplasmic cytochrome type-c oxidoreducta... 113 8e-24 >D8IQ84.1 D8IQ84_HERSS Periplasmic cytochrome c553 protein Length = 117 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 116/117 (99%), Positives = 116/117 (99%) Query: 1 MKKNLITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60 MKKNLITLCLLAAATLC QAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ Sbjct: 1 MKKNLITLCLLAAATLCTQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60 Query: 61 HADYLKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 HADYLKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK Sbjct: 61 HADYLKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 >F1W2M0.1 F1W2M0_9BURK Putative cytochrome c Length = 118 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 67/92 (72%), Positives = 78/92 (84%) Query: 26 VANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQHADYLKHALTAYRRGNTAMNGRNNA 85 V NG+ALT KYNCA+CHG D+NSP +P YPKLAGQHADYL HAL AY+RG A+NGR+NA Sbjct: 26 VDNGKALTAKYNCAACHGADFNSPIDPTYPKLAGQHADYLTHALVAYKRGGDALNGRSNA 85 Query: 86 IMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 IM+ AKPLS +D+ DIAAYLHSLPGSLV+ K Sbjct: 86 IMAGMAKPLSSQDMTDIAAYLHSLPGSLVMVK 117 >A4G3A2.1 A4G3A2_HERAR Putative cytochrome c Length = 117 Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 64/117 (54%), Positives = 81/117 (69%) Query: 1 MKKNLITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60 MKK L + +A + AA + + G+A KYNCASCHG D+ +P +P YPKLAGQ Sbjct: 1 MKKILALAVVSLSAVVSFNAAAESKIEAGKAAVAKYNCASCHGADFQTPIDPGYPKLAGQ 60 Query: 61 HADYLKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 H DYLKHA+ AY+RGN NGR+NAIM +K LS +DI +IA YLHSLP +LV+RK Sbjct: 61 HKDYLKHAMVAYKRGNQVSNGRSNAIMGPLSKQLSGQDIENIATYLHSLPTTLVLRK 117 >A6SVV6.1 A6SVV6_JANMA Cytochrome Length = 117 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 70/119 (58%), Positives = 85/119 (71%), Gaps = 4/119 (3%) Query: 1 MKK--NLITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLA 58 MKK +L L L AA +L A A + D G+A K+NCASCHG D+ +P +PAYP LA Sbjct: 1 MKKIISLAILSLSAAVSLNASADSKIDA--GKAAVTKFNCASCHGADFKTPIDPAYPILA 58 Query: 59 GQHADYLKHALTAYRRGNTAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 GQH DYLKHAL +Y+RGN A NGR+N IM AK LS +DI +IAAYLHSLP +LV+RK Sbjct: 59 GQHKDYLKHALVSYKRGNKASNGRSNPIMEPLAKQLSSQDIENIAAYLHSLPTNLVLRK 117 >B1XUV5.1 B1XUV5_POLNS Cytochrome c class I Length = 117 Score = 127 bits (319), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 67/118 (56%), Positives = 82/118 (69%), Gaps = 2/118 (1%) Query: 1 MKKNLITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60 MK LIT LL++ L ANAA+ G+AL EK NCASCHG N+P PAYPKLAGQ Sbjct: 1 MKFALITAVLLSSIGLV-NVANAANKDKGQALVEKANCASCHGAGLNAPILPAYPKLAGQ 59 Query: 61 HADYLKHALTAYRRGN-TAMNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 ++DYL +AL AY+ GN A GRNNA+M Q + SD D+ DIAAY+ SLPG+ VV+K Sbjct: 60 YSDYLYYALKAYKVGNGNAQFGRNNAVMGLQVQNFSDADLQDIAAYISSLPGNFVVKK 117 >A4SXB0.1 A4SXB0_POLSQ Cytochrome c, class I Length = 121 Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 65/122 (53%), Positives = 82/122 (67%), Gaps = 6/122 (4%) Query: 1 MKKNLITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60 MK L+T LL++ L ANAA + G+AL EK NC SCHG N+P P YPKLAGQ Sbjct: 1 MKLALVTAVLLSSIGLV-NVANAASIDKGQALVEKGNCVSCHGAGLNAPIMPTYPKLAGQ 59 Query: 61 HADYLKHALTAYRRGNT-AMNGRNNAIMS----AQAKPLSDRDINDIAAYLHSLPGSLVV 115 + DYL +AL AY G+T + GRNNA MS AQ PL+D+D+ DIAAY+ SLPG+ V+ Sbjct: 60 YPDYLYYALKAYEVGDTNHLYGRNNATMSSLIKAQTTPLTDQDLRDIAAYIASLPGNFVI 119 Query: 116 RK 117 +K Sbjct: 120 KK 121 >E5UE86.1 E5UE86_ALCXX Cytochrome Length = 116 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 63/113 (55%), Positives = 75/113 (66%), Gaps = 6/113 (5%) Query: 11 LAAATLC--AQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQHADYLKHA 68 LA ATL AA A D+ G+A+ EK+ CASCHG D + +PAYP LAGQHADYL HA Sbjct: 4 LAGATLAISGAAAQAQDLVAGKAVFEKFQCASCHGADAKTAVDPAYPTLAGQHADYLVHA 63 Query: 69 LTAYRRGNTA----MNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 L AYRRG + N R N IM A A LSD+DI+++AA+L SLP L VRK Sbjct: 64 LKAYRRGASGSAATANVRKNPIMGAFATQLSDQDISNVAAWLSSLPSDLGVRK 116 >D8NW35.1 D8NW35_RALSO Putative cytochrome c, class IC Length = 128 Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 60/130 (46%), Positives = 78/130 (60%), Gaps = 15/130 (11%) Query: 1 MKKNLITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQ 60 MKK I+L L A A +A AAD+ G+ L EK C +CHG+ N+P P YPKLAGQ Sbjct: 1 MKK--ISLGLGALVLGVAVSAQAADLQKGKQLVEKGGCVTCHGEGLNAPISPDYPKLAGQ 58 Query: 61 HADYLKHALTAYRRGNTAMNGRNNAIMSAQA-------------KPLSDRDINDIAAYLH 107 H DY+ HAL AY+ + GRNNAIM+ Q +P + ++ DIAAY+ Sbjct: 59 HGDYIYHALLAYQTSGNPLMGRNNAIMAGQVNANPAMIGENGKPRPFTQSELKDIAAYIE 118 Query: 108 SLPGSLVVRK 117 SLPGSLV++K Sbjct: 119 SLPGSLVLKK 128 >E5AT73.1 E5AT73_BURRH Cytochrome c-554(548) Length = 136 Score = 114 bits (284), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 55/99 (55%), Positives = 70/99 (70%), Gaps = 1/99 (1%) Query: 20 AANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQHADYLKHALTAYRR-GNTA 78 AA AAD+ NGRAL E+ NCA+CHG + ++P P YPKLAGQHADY L Y+ G Sbjct: 38 AAQAADIGNGRALVERTNCAACHGAELSTPVSPDYPKLAGQHADYTYWTLRQYQMGGGNP 97 Query: 79 MNGRNNAIMSAQAKPLSDRDINDIAAYLHSLPGSLVVRK 117 GR+NAIM+AQ + LS+ D+ DIAAY+ SL G LV++K Sbjct: 98 SFGRDNAIMAAQVQNLSESDLKDIAAYVESLKGDLVLKK 136 >B5SMK8.1 B5SMK8_RALSO Periplasmic cytochrome type-c oxidoreductase protein EC=1.-.-.- Length = 128 Score = 113 bits (283), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 13/125 (10%) Query: 6 ITLCLLAAATLCAQAANAADVANGRALTEKYNCASCHGKDYNSPTEPAYPKLAGQHADYL 65 I+L L A A +A AAD+ G+ L EK C +CHG N+P P YPKLAGQH DYL Sbjct: 4 ISLGLGALVLGVAVSAQAADLQKGKQLVEKGGCVTCHGPGLNAPISPDYPKLAGQHGDYL 63 Query: 66 KHALTAYRRGNTAMNGRNNAIMSAQA-------------KPLSDRDINDIAAYLHSLPGS 112 HAL AY+ + GR+NAIM+ Q +P + ++ DIAAY+ SLPGS Sbjct: 64 YHALLAYQTSGNPLMGRSNAIMAGQVNANAAMVGDNGKPRPFTQSELKDIAAYIESLPGS 123 Query: 113 LVVRK 117 LV++K Sbjct: 124 LVLKK 128