BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0058.p (245 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IPY7.1 D8IPY7_HERSS Two component transcription regulator protein 485 e-135 E6QQD7.1 E6QQD7_9ZZZZ Transcriptional regulatory protein ompR 400 e-110 F1VZP0.1 F1VZP0_9BURK Two-component response regulator 396 e-108 C4ZLU9.1 C4ZLU9_THASP Two component transcriptional regulator, w... 338 5e-91 A1K956.1 A1K956_AZOSB Probable DNA-binding response regulator 325 3e-87 E6PLW8.1 E6PLW8_9ZZZZ Transcriptional regulatory protein ompR 319 2e-85 D6CME7.1 D6CME7_THIS3 Transcriptional regulatory protein ompR 319 2e-85 E7RYA2.1 E7RYA2_9BURK Transcriptional regulatory protein OmpR 318 5e-85 A6T3B9.1 A6T3B9_JANMA Two components system response regulator 314 6e-84 A2WGH4.1 A2WGH4_9BURK Response regulator 311 4e-83 >D8IPY7.1 D8IPY7_HERSS Two component transcription regulator protein Length = 248 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 244/245 (99%), Positives = 244/245 (99%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG Sbjct: 4 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 63 Query: 61 EDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 EDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR Sbjct: 64 EDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 123 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVL 180 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVL Sbjct: 124 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVL 183 Query: 181 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTAEG 240 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT EG Sbjct: 184 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTTEG 243 Query: 241 AGRSA 245 AGRSA Sbjct: 244 AGRSA 248 >E6QQD7.1 E6QQD7_9ZZZZ Transcriptional regulatory protein ompR Length = 243 Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust. Identities = 195/242 (80%), Positives = 218/242 (90%), Gaps = 3/242 (1%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 MD +HILVVDDD +IRTLLAEYLD+NGLR A+NGS+MRRVLE++R+DLIVLDLTLPG Sbjct: 1 MDMTSHILVVDDDHEIRTLLAEYLDANGLRAFVASNGSDMRRVLEQTRIDLIVLDLTLPG 60 Query: 61 EDGLTLCRNLRATS---SVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRS 117 EDGLTLCRNLRA S VPVIMLTARGEPLDRI+GLEMGADDYL KPFEPRELFARIRS Sbjct: 61 EDGLTLCRNLRAHSVHGGVPVIMLTARGEPLDRIIGLEMGADDYLPKPFEPRELFARIRS 120 Query: 118 VLRRTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPN 177 VLRRTQALPPNMA+ + + F+G TLDL ARHL+NR+GVV+ALSG EFR+LK+FLDHPN Sbjct: 121 VLRRTQALPPNMAESEARQIEFSGLTLDLIARHLLNREGVVIALSGMEFRMLKIFLDHPN 180 Query: 178 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 237 R+LNRDQL+ L QGRESDPFDRS+DIQISRLRQKLGDDAR P+IIKT+RNEGYVLAT VT Sbjct: 181 RILNRDQLMGLMQGRESDPFDRSIDIQISRLRQKLGDDARMPSIIKTIRNEGYVLATHVT 240 Query: 238 AE 239 AE Sbjct: 241 AE 242 >F1VZP0.1 F1VZP0_9BURK Two-component response regulator Length = 242 Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust. Identities = 196/240 (81%), Positives = 215/240 (89%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 M+ T ILVVDDDRDIRTLLA+YLD NG RT TA+NG+EMR++L+ +R+DL+VLDLTLPG Sbjct: 1 MENPTQILVVDDDRDIRTLLADYLDGNGFRTFTASNGTEMRKMLDTARIDLVVLDLTLPG 60 Query: 61 EDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 EDGLTLCRNLRA SS+PVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR Sbjct: 61 EDGLTLCRNLRAQSSLPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVL 180 RT ALPPNMA + +M F W LDL ARHLV DG VVALSGAEFRLLKVFL+HPNRVL Sbjct: 121 RTNALPPNMALSEAHSMLFDTWRLDLMARHLVMEDGTVVALSGAEFRLLKVFLEHPNRVL 180 Query: 181 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTAEG 240 NRDQLLELT+GR++DPFDRSVDIQISRLRQKLGDDARTP IIKTVRNEGYVL+ TV+ E Sbjct: 181 NRDQLLELTRGRDADPFDRSVDIQISRLRQKLGDDARTPRIIKTVRNEGYVLSATVSIES 240 >C4ZLU9.1 C4ZLU9_THASP Two component transcriptional regulator, winged helix family Length = 256 Score = 338 bits (866), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 170/248 (68%), Positives = 203/248 (81%), Gaps = 7/248 (2%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 M+T+ HIL+VDDDRDIR LLA+YL+ GLR TA +G EM+ LE R+DLIVLDL +PG Sbjct: 1 MNTSDHILIVDDDRDIRQLLADYLEKQGLRCTTAADGREMKAALETHRIDLIVLDLMMPG 60 Query: 61 EDGLTLCRNLRAT----SSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIR 116 EDGLTLCRNLRA+ ++ P++MLTARGE +DRI+GLEMGADDYLAKPF PRELFARIR Sbjct: 61 EDGLTLCRNLRASGGPHANTPILMLTARGEDMDRIIGLEMGADDYLAKPFVPRELFARIR 120 Query: 117 SVLRRTQALPPNM-AQPDVAA--MRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFL 173 +VLRRT+ALPPN+ A P A +RFA W LD RHLV+ +G VVALSGAE+R+L VFL Sbjct: 121 AVLRRTRALPPNLDAAPPANARLLRFAHWRLDTINRHLVDAEGTVVALSGAEYRMLAVFL 180 Query: 174 DHPNRVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLA 233 HP +VL+RDQL+ELTQGRE+D FDRS+D+ +SRLRQ+LGD+AR P IIKTVRNEGYVLA Sbjct: 181 SHPQKVLSRDQLMELTQGREADVFDRSIDLLVSRLRQRLGDNAREPAIIKTVRNEGYVLA 240 Query: 234 TTVTAEGA 241 V AE A Sbjct: 241 AEVVAETA 248 >A1K956.1 A1K956_AZOSB Probable DNA-binding response regulator Length = 252 Score = 325 bits (833), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 162/239 (67%), Positives = 192/239 (80%), Gaps = 6/239 (2%) Query: 6 HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 65 HIL+VDDDRDIR+LLA+YL+ GLR TA +G EM+ LE RVDLIVLDL LPGEDGLT Sbjct: 7 HILIVDDDRDIRSLLADYLEKQGLRCTTAADGREMKAALERHRVDLIVLDLMLPGEDGLT 66 Query: 66 LCRNLRATSS---VPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRT 122 LCRNLRA S P++MLTARGE +DRI+GLEMGADDYL KPF PREL+AR+R++LRR Sbjct: 67 LCRNLRAGGSHANTPILMLTARGEDMDRIIGLEMGADDYLPKPFVPRELYARVRAILRRA 126 Query: 123 QALPPNM-AQPDVAA--MRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRV 179 +ALPPN+ QP A +RFA W LD RHL++ G VV LSGAE+R+L VFL HP RV Sbjct: 127 RALPPNLDTQPQAQARELRFAQWRLDTVNRHLIDAQGTVVPLSGAEYRMLGVFLAHPQRV 186 Query: 180 LNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTA 238 L+RDQL+ELTQGRE+D FDRS+D+ +SRLRQ+LGD+AR P IIKTVRNEGYVL+ V A Sbjct: 187 LSRDQLMELTQGREADVFDRSIDLMVSRLRQRLGDNAREPAIIKTVRNEGYVLSAEVVA 245 >E6PLW8.1 E6PLW8_9ZZZZ Transcriptional regulatory protein ompR Length = 240 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/236 (66%), Positives = 185/236 (78%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 M+T+ HIL+VDDD +IR LL+ YL NGLR G M R L S VDLIVLDL LPG Sbjct: 1 METSDHILIVDDDAEIRRLLSAYLQKNGLRVTAVGEGKAMERALLASGVDLIVLDLMLPG 60 Query: 61 EDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 +DGLTLCR LRA S +P++MLTARGE DRI+GLEMGADDYL KPF REL ARI+ +LR Sbjct: 61 DDGLTLCRKLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILR 120 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVL 180 R ++LP N+ +V +RFAGWTLD RHLV+ GVVVALSGAE+RLL+VFL HPNRVL Sbjct: 121 RARSLPSNLQPEEVRQVRFAGWTLDTAHRHLVSPTGVVVALSGAEYRLLRVFLSHPNRVL 180 Query: 181 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTV 236 NRDQL++LTQGRE+DP DRS+D+Q+SRLRQ+LGDD R P +IKTVR GYVL+ V Sbjct: 181 NRDQLVDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGTGYVLSAPV 236 >D6CME7.1 D6CME7_THIS3 Transcriptional regulatory protein ompR Length = 240 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 156/236 (66%), Positives = 186/236 (78%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 M+T+ HIL+VDDD +IR LL+ YL NGLR +G M R L S VDLIVLDL LPG Sbjct: 1 METSDHILIVDDDAEIRRLLSAYLQKNGLRVTAVGDGKAMERALLASGVDLIVLDLMLPG 60 Query: 61 EDGLTLCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLR 120 +DGLTLCRNLRA S +P++MLTARGE DRI+GLEMGADDYL KPF REL ARI+ +LR Sbjct: 61 DDGLTLCRNLRAKSDIPILMLTARGEETDRIVGLEMGADDYLPKPFSARELLARIKVILR 120 Query: 121 RTQALPPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVL 180 R ++LP N+ + +RFAGWTLD RHLV+ GVVVALSGAE+RLL+VFL HPNRVL Sbjct: 121 RARSLPRNLQPEEARQVRFAGWTLDTAHRHLVSPAGVVVALSGAEYRLLRVFLSHPNRVL 180 Query: 181 NRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTV 236 NRDQL++LTQGRE+DP DRS+D+Q+SRLRQ+LGDD R P +IKTVR GYVL+ V Sbjct: 181 NRDQLVDLTQGREADPLDRSIDVQVSRLRQRLGDDPRDPALIKTVRGAGYVLSAPV 236 >E7RYA2.1 E7RYA2_9BURK Transcriptional regulatory protein OmpR Length = 248 Score = 318 bits (814), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 152/235 (64%), Positives = 190/235 (80%), Gaps = 2/235 (0%) Query: 6 HILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPGEDGLT 65 H+LVVDDD +IRTLLAEYL NG+R A + +EMR+V +E+R D+I+LDL +PGEDGLT Sbjct: 16 HVLVVDDDAEIRTLLAEYLSQNGIRVTVARDATEMRQVFDEARPDIIILDLMMPGEDGLT 75 Query: 66 LCRNLRATSSVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSVLRRTQAL 125 +CR LR+ S+VPVIMLTAR + +DRI+G+EMGADDYL KPF PREL ARI+ VLRRT+ L Sbjct: 76 VCRELRSRSNVPVIMLTARADEVDRIIGIEMGADDYLGKPFSPRELLARIKGVLRRTRTL 135 Query: 126 PPNMAQPDVAAMRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPNRVLNRDQL 185 PP++ D +RFAGWTLD ARHL++ D V+V LSGAE+RLL V + HPNRVL+R+QL Sbjct: 136 PPSLG--DAQQVRFAGWTLDSGARHLISPDNVIVPLSGAEYRLLSVLIQHPNRVLDRNQL 193 Query: 186 LELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVTAEG 240 ++LT GRE+ PFDRS+D+QISRLR +L DDAR P IIKT+RNEGY+LA V G Sbjct: 194 MDLTLGREATPFDRSIDVQISRLRNRLNDDAREPRIIKTIRNEGYILAAHVERVG 248 >A6T3B9.1 A6T3B9_JANMA Two components system response regulator Length = 246 Score = 314 bits (805), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 159/239 (66%), Positives = 188/239 (78%), Gaps = 3/239 (1%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 M+ N HIL+VDDDR+IR LLA YL+ NG+RT A NG +MR VLE+ VDLIVLDL LPG Sbjct: 1 MENNDHILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPG 60 Query: 61 EDGLTLCRNLRATS--SVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSV 118 EDGLTLCR LRA ++PV+MLTAR E DRI+GLEMGADDYL+KPF RELFARIRSV Sbjct: 61 EDGLTLCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSV 120 Query: 119 LRRTQALPPNMAQPDVAA-MRFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPN 177 LRR + LP N+ + A + F W LD TARHL++ G +VALSGAE+RLL+VFLDHP Sbjct: 121 LRRARMLPANLQVSEPAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQ 180 Query: 178 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTV 236 RVL RDQLL LTQGR++DPFDRS+D+ ISRLRQ+L DDAR P IKT+R+EGYV + V Sbjct: 181 RVLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >A2WGH4.1 A2WGH4_9BURK Response regulator Length = 246 Score = 311 bits (798), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 159/240 (66%), Positives = 187/240 (77%), Gaps = 3/240 (1%) Query: 1 MDTNTHILVVDDDRDIRTLLAEYLDSNGLRTLTATNGSEMRRVLEESRVDLIVLDLTLPG 60 MD H+L+VDDDR IR L+A+YL+ NG+R A NG EMR VL++ DLIVLDL LPG Sbjct: 1 MDKIDHVLIVDDDRAIRELIADYLEKNGMRVSLAANGREMRNVLDDGAPDLIVLDLMLPG 60 Query: 61 EDGLTLCRNLRATS--SVPVIMLTARGEPLDRILGLEMGADDYLAKPFEPRELFARIRSV 118 EDGL LCR+LRA +VPV+MLTARGE DRI+GLEMGADDYLAKPF REL ARIRSV Sbjct: 61 EDGLALCRDLRAGKFRTVPVLMLTARGEETDRIIGLEMGADDYLAKPFAVRELLARIRSV 120 Query: 119 LRRTQALPPNMAQPDVAAM-RFAGWTLDLTARHLVNRDGVVVALSGAEFRLLKVFLDHPN 177 LRR + LPP M + AAM F W LD T RHL++ +G +VALSGAE+RLL+VFLDHP Sbjct: 121 LRRARMLPPGMQVTETAAMLAFGEWRLDTTGRHLLDTEGTLVALSGAEYRLLRVFLDHPQ 180 Query: 178 RVLNRDQLLELTQGRESDPFDRSVDIQISRLRQKLGDDARTPTIIKTVRNEGYVLATTVT 237 RVL RDQLL LTQGR+SDPFDRS+D+ +SRLRQ+L D AR P IKT+RNEGYV ++ VT Sbjct: 181 RVLTRDQLLNLTQGRQSDPFDRSIDLLVSRLRQRLRDGAREPRYIKTLRNEGYVFSSAVT 240