BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0029.0046.p (212 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IPX6.1 D8IPX6_HERSS Ribosome maturation factor rimM 417 e-115 A6SVI5.1 RIMM_JANMA Ribosome maturation factor rimM 238 5e-61 A4G2T6.1 RIMM_HERAR Ribosome maturation factor rimM 236 1e-60 F1VV84.1 F1VV84_9BURK 16S rRNA processing protein RimM 229 2e-58 C3X506.1 C3X506_OXAFO Ribosome maturation factor rimM 188 4e-46 Q46Y83.1 RIMM_CUPPJ Ribosome maturation factor rimM 183 2e-44 C3XB69.1 C3XB69_OXAFO Ribosome maturation factor rimM 177 1e-42 Q0KD80.1 RIMM_CUPNH Ribosome maturation factor rimM 174 6e-42 F2LC46.1 F2LC46_BURGA 16S rRNA processing protein RimM 173 1e-41 B1G2P1.1 B1G2P1_9BURK Ribosome maturation factor rimM 173 1e-41 >D8IPX6.1 D8IPX6_HERSS Ribosome maturation factor rimM Length = 204 Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 9 MTHPAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQD 68 MTHPAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQD Sbjct: 1 MTHPAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQD 60 Query: 69 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE 128 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE Sbjct: 61 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE 120 Query: 129 NLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIP 188 NLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIP Sbjct: 121 NLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIP 180 Query: 189 FVDQFVKTVQQSEKKIIVDWDKDY 212 FVDQFVKTVQQSEKKIIVDWDKDY Sbjct: 181 FVDQFVKTVQQSEKKIIVDWDKDY 204 >A6SVI5.1 RIMM_JANMA Ribosome maturation factor rimM Length = 179 Score = 238 bits (606), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 121/193 (62%), Positives = 141/193 (73%), Gaps = 17/193 (8%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSG 79 P+DLV VG+++GAYG+ GW+RVRPYS++ADALL AKTWWL+K DV++MQSK H+G Sbjct: 4 PEDLVLVGYISGAYGLNGWVRVRPYSADADALLTAKTWWLDKP--EFHDVEMMQSKIHTG 61 Query: 80 DVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQGEHLGVVS 139 DVVA+L GVA R+AAEA+KG V I R HFPAL DNEFYWVDLIG VENLQGEHLG VS Sbjct: 62 DVVAKLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGEHLGQVS 121 Query: 140 DMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTVQQ 199 DMMDNGAHPIL+V P A DP AA E+LIPFV+QFV TV + Sbjct: 122 DMMDNGAHPILRVAVP--QAAETTDP-------------KAAPQELLIPFVEQFVITVDR 166 Query: 200 SEKKIIVDWDKDY 212 + KKI VDW DY Sbjct: 167 TAKKITVDWGLDY 179 >A4G2T6.1 RIMM_HERAR Ribosome maturation factor rimM Length = 177 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/193 (62%), Positives = 142/193 (73%), Gaps = 19/193 (9%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSG 79 P+DLV VG+++GAYG+ GW+RVRPYS++ADALLNAKTWWL+K +DV +MQSK HSG Sbjct: 4 PEDLVLVGYISGAYGLNGWVRVRPYSADADALLNAKTWWLDKP--EFRDVAMMQSKIHSG 61 Query: 80 DVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQGEHLGVVS 139 DVVA+L GVA R+AAEA+KG V I R HFPAL DNEFYWVDLIG VENLQG LG VS Sbjct: 62 DVVAQLMGVAGRDAAEALKGATVQIPRSHFPALSDNEFYWVDLIGLEVENLQGVRLGQVS 121 Query: 140 DMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTVQQ 199 DMMDNGAHPIL+V P ++A PK AA E+LIPFV+QFV T+ Q Sbjct: 122 DMMDNGAHPILRVAVP---------QTSEADPK--------AAQELLIPFVEQFVITIDQ 164 Query: 200 SEKKIIVDWDKDY 212 + KKI VDW DY Sbjct: 165 TAKKITVDWGLDY 177 >F1VV84.1 F1VV84_9BURK 16S rRNA processing protein RimM Length = 187 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 120/200 (60%), Positives = 139/200 (69%), Gaps = 21/200 (10%) Query: 13 AQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVM 72 A +G P DLV VG+V+GAYG+ GW+R++P+SS DALLNA+TWWL+K DVDVM Sbjct: 9 AGSGVIVPADLVQVGYVSGAYGLNGWVRIKPFSSTGDALLNARTWWLDKPAL--HDVDVM 66 Query: 73 QSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQG 132 Q+K HSGDVV +L GVA R+AAEA+KGT V I R FPAL D EFYWVDLIG AVENLQG Sbjct: 67 QAKMHSGDVVVQLAGVAGRDAAEALKGTSVQIPRSRFPALPDGEFYWVDLIGLAVENLQG 126 Query: 133 EHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQ 192 E +GVV DMMDNGAHPIL+V A + P AD A E+LIPFV Q Sbjct: 127 ESIGVVHDMMDNGAHPILRVEAAII-------PGAD------------KADEILIPFVGQ 167 Query: 193 FVKTVQQSEKKIIVDWDKDY 212 FV+TV Q KKI VDW DY Sbjct: 168 FVRTVDQQAKKITVDWGLDY 187 >C3X506.1 C3X506_OXAFO Ribosome maturation factor rimM Length = 179 Score = 188 bits (478), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 97/193 (50%), Positives = 129/193 (66%), Gaps = 23/193 (11%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLEKSGQPKQDVDVMQSKGHSG 79 P DLV VGHV GAYGI+GW+R++PYS+ A+ALL K WWL+ SG ++V V+Q++ Sbjct: 10 PADLVEVGHVGGAYGIRGWVRIKPYSAGAEALLAVKEWWLDSSGS--REVKVLQARWQGA 67 Query: 80 DVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVENLQGEHLGVVS 139 DVVA L GV+DR+AAEA++G VV ISR+HFPA D+ E+YWVDLIG AV N QG+ LG V Sbjct: 68 DVVACLAGVSDRDAAEALRGAVVRISRRHFPAPDEGEYYWVDLIGLAVFNRQGDCLGTVK 127 Query: 140 DMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPFVDQFVKTVQQ 199 +MDNGAHP+L+ ++ PE D K E+LIPFV++ V + Sbjct: 128 GLMDNGAHPVLQ----IETGMPE-----DKK------------RELLIPFVERHVGKIDI 166 Query: 200 SEKKIIVDWDKDY 212 +K+ VDW+ DY Sbjct: 167 ENRKMTVDWELDY 179 >Q46Y83.1 RIMM_CUPPJ Ribosome maturation factor rimM Length = 221 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 100/205 (48%), Positives = 125/205 (60%), Gaps = 33/205 (16%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWL------------EKSGQPKQ 67 PDDLV VG+V AYGI+GWI+V P++++A ALL+A+ WWL E S Sbjct: 38 PDDLVEVGYVGAAYGIRGWIKVEPHANDASALLHARRWWLLTPPQAGLVATAEASRAQAV 97 Query: 68 DVDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAV 127 V V QS+ HSG VVA+ TGV+DRN AEA+KG V I R FPA ++NEFYWVDLIG AV Sbjct: 98 CVRVAQSREHSGTVVAQATGVSDRNLAEALKGRRVWIRRADFPAPEENEFYWVDLIGCAV 157 Query: 128 ENLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLI 187 N QGE LG VS ++DNGAH IL+V + D A E L+ Sbjct: 158 SNEQGELLGEVSGLIDNGAHQILQVAYALPD---------------------GKAGERLV 196 Query: 188 PFVDQFVKTVQQSEKKIIVDWDKDY 212 PFVD F++TV + K+I+VDW DY Sbjct: 197 PFVDAFLRTVDTAGKRIVVDWGLDY 221 >C3XB69.1 C3XB69_OXAFO Ribosome maturation factor rimM Length = 180 Score = 177 bits (448), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 90/212 (42%), Positives = 131/212 (61%), Gaps = 32/212 (15%) Query: 1 MKNRSGVPMTHPAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWLE 60 M NR+G P DL+ VGH++GAYGI+GW ++ PYS+EA+A+L K WWL+ Sbjct: 1 MANRAG---------HIEVPSDLIEVGHISGAYGIRGWAKIVPYSAEAEAMLRVKDWWLD 51 Query: 61 KSGQPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWV 120 +V VMQ++ ++VA +G+ +R AAEA++G+V+ ISR FP L ++E+YWV Sbjct: 52 LPDM--HNVKVMQARRQGDEIVAHFSGIDNREAAEALRGSVICISRSRFPELPEDEYYWV 109 Query: 121 DLIGSAVENLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSA 180 DLIG +V NL+G+ LG V ++DNGAHP+L+V V+D+ ++ Sbjct: 110 DLIGLSVFNLRGDALGTVRGLIDNGAHPVLQVA--VEDSENKV----------------- 150 Query: 181 AASEMLIPFVDQFVKTVQQSEKKIIVDWDKDY 212 E+LIPFVDQF+ V + KI VDW+ DY Sbjct: 151 --RELLIPFVDQFIDDVDREGGKITVDWELDY 180 >Q0KD80.1 RIMM_CUPNH Ribosome maturation factor rimM Length = 222 Score = 174 bits (442), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 95/204 (46%), Positives = 125/204 (61%), Gaps = 32/204 (15%) Query: 20 PDDLVTVGHVTGAYGIQGWIRVRPYSSEADALLNAKTWWL---EKSGQPKQD-------- 68 P+DLV VG++ AYGI+GWI+V P++ +A ALL+A+ WWL ++G D Sbjct: 40 PEDLVEVGYIGAAYGIRGWIKVLPHADDASALLHARRWWLLAPPQAGLVAADASRAQPVC 99 Query: 69 VDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVE 128 V + QS+ HSG VVA+ +GVADRN AEA+KG V I R FPA +++EFYWVDLIG V Sbjct: 100 VKIAQSREHSGTVVAQASGVADRNLAEALKGRRVWIRRADFPAPEEDEFYWVDLIGCTVS 159 Query: 129 NLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIP 188 N QGE LG VS ++DNGAH IL+V + D A E LIP Sbjct: 160 NEQGELLGEVSGLIDNGAHQILQVACVLPD---------------------GKAGERLIP 198 Query: 189 FVDQFVKTVQQSEKKIIVDWDKDY 212 FVD F+++V + K+I+VDW DY Sbjct: 199 FVDAFLRSVDTAGKRIVVDWGLDY 222 >F2LC46.1 F2LC46_BURGA 16S rRNA processing protein RimM Length = 237 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 96/209 (45%), Positives = 124/209 (59%), Gaps = 21/209 (10%) Query: 7 VPMTHPAQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEA---DALLNAKTWWLEKSG 63 VP + S PDD V VG + AYG++GW+++ P++ DALL A+TWW EK G Sbjct: 47 VPSSERLATAQSWPDDAVEVGAIVDAYGLKGWVKIAPHAGAGRGGDALLKARTWWFEK-G 105 Query: 64 QPKQDVDVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLI 123 + V + QSK HS VVA L G+ADR+ A A++G V + R+ FPALD +EFYWVDLI Sbjct: 106 AERLAVGITQSKFHSDTVVAHLAGLADRDQALALRGYRVYVRREDFPALDADEFYWVDLI 165 Query: 124 GSAVENLQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAAS 183 G V N G LG V DM+DNG H I++V P D KP +G Sbjct: 166 GLDVVNEAGVELGRVGDMIDNGVHSIMRVDYPAS--------GKDGKPVRG--------- 208 Query: 184 EMLIPFVDQFVKTVQQSEKKIIVDWDKDY 212 E LIPFV +VKTV Q+ K+I+VDW+ DY Sbjct: 209 ERLIPFVGVYVKTVDQAAKRIVVDWEADY 237 >B1G2P1.1 B1G2P1_9BURK Ribosome maturation factor rimM Length = 248 Score = 173 bits (439), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/203 (48%), Positives = 128/203 (63%), Gaps = 21/203 (10%) Query: 13 AQAGFSAPDDLVTVGHVTGAYGIQGWIRVRPYSSEA---DALLNAKTWWLEKSGQPKQDV 69 A+ S P D V VG V AYG++GW++V ++ DALL+AK WWL K G+ +Q Sbjct: 64 AETAESWPADAVEVGAVVDAYGLKGWVKVAAHADAGHGGDALLSAKRWWLMK-GRERQSA 122 Query: 70 DVMQSKGHSGDVVARLTGVADRNAAEAMKGTVVSISRKHFPALDDNEFYWVDLIGSAVEN 129 +Q+K HS VVA L GVADR+AA A++G+ V +SR FPAL+ +EFYWVDL+G V N Sbjct: 123 PSLQAKTHSDSVVALLGGVADRDAALALRGSRVYVSRSEFPALEADEFYWVDLLGLDVVN 182 Query: 130 LQGEHLGVVSDMMDNGAHPILKVTAPVQDTAPELDPAADAKPKKGAKEKSAAASEMLIPF 189 L G +LG V+DM+DNGAH +L++ AAD K G E+ LIPF Sbjct: 183 LAGVNLGKVADMIDNGAHSVLRIEY----------AAADKTGKPGTAER-------LIPF 225 Query: 190 VDQFVKTVQQSEKKIIVDWDKDY 212 V FVKTV Q+ K+IIVDW+ DY Sbjct: 226 VGVFVKTVDQAAKQIIVDWEADY 248