BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0031.p         (54 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IPW1.1 D8IPW1_HERSS Putative uncharacterized protein                 87   7e-16

>D8IPW1.1 D8IPW1_HERSS Putative uncharacterized protein
          Length = 113

 Score = 87.4 bits (215), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/48 (93%), Positives = 46/48 (95%), Gaps = 1/48 (2%)

Query: 1   VAFPVIITLVSALLRVRGNELHLEYLLPARMALLLAQGRGDRAGSEKN 48
           VAFPVIITLVS+LLRVRGNELHLEYLLPARMALLLAQGR DRAGSEK 
Sbjct: 66  VAFPVIITLVSSLLRVRGNELHLEYLLPARMALLLAQGR-DRAGSEKT 112