BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0029.0003.p         (37 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4G308.1 A4G308_HERAR Putative integrase                               68   4e-10
C5CK55.1 C5CK55_VARPS Integrase family protein                         65   3e-09

>A4G308.1 A4G308_HERAR Putative integrase
          Length = 413

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/36 (86%), Positives = 33/36 (91%)

Query: 1   MSENTVNAALRGMGYAKEIMTAHGFRAMARTILDEV 36
           MSENT+NAALR MGY KE MTAHGFRAMARTI+DEV
Sbjct: 317 MSENTINAALRSMGYDKETMTAHGFRAMARTIMDEV 352


>C5CK55.1 C5CK55_VARPS Integrase family protein
          Length = 409

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/36 (80%), Positives = 33/36 (91%)

Query: 1   MSENTVNAALRGMGYAKEIMTAHGFRAMARTILDEV 36
           MSENT+NAALRGMGY+ E+ TAHGFRA ARTI+DEV
Sbjct: 312 MSENTINAALRGMGYSAEVHTAHGFRATARTIMDEV 347