BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0328.p (193 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1U5.1 D8J1U5_HERSS Virulence regulator protein 397 e-109 F1VUL8.1 F1VUL8_9BURK Two component transcriptional regulator, L... 343 8e-93 A6T1A2.1 A6T1A2_JANMA DNA-binding response regulator, LuxR family 330 8e-89 A4G809.1 A4G809_HERAR Response regulator receiver, LuxR family 324 4e-87 B2AG70.1 B2AG70_CUPTR RESPONSE REGULATOR, LuxR family 215 2e-54 Q0KFB6.1 Q0KFB6_CUPNH Response regulator, NarL-family 214 4e-54 Q45416.1 Q45416_RALSO VsrD 214 4e-54 C6BKJ4.1 C6BKJ4_RALP1 Two component transcriptional regulator, L... 214 5e-54 Q8Y2P3.1 Q8Y2P3_RALSO Response regulator transcription regulator... 213 8e-54 D8NQP8.1 D8NQP8_RALSO Response regulator, LuxR family 213 1e-53 >D8J1U5.1 D8J1U5_HERSS Virulence regulator protein Length = 209 Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust. Identities = 193/193 (100%), Positives = 193/193 (100%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL Sbjct: 17 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE Sbjct: 77 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 136 Query: 121 PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNA 180 PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNA Sbjct: 137 PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNNA 196 Query: 181 DIIYYAIKNNLID 193 DIIYYAIKNNLID Sbjct: 197 DIIYYAIKNNLID 209 >F1VUL8.1 F1VUL8_9BURK Two component transcriptional regulator, LuxR family Length = 210 Score = 343 bits (880), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 163/194 (84%), Positives = 182/194 (93%), Gaps = 1/194 (0%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 VH+FI +IP MEIGGEA TAEEAIRL+R +DWDIV+LDIAMPDKSGVEVLKQIKREKP+L Sbjct: 17 VHYFIDDIPDMEIGGEAGTAEEAIRLIRAEDWDIVVLDIAMPDKSGVEVLKQIKREKPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPE+RYAVQ+LRSGASGYVQKEALATELVNAI TI+RGHKYISY VAELLT + Sbjct: 77 PVLILSMHPENRYAVQILRSGASGYVQKEALATELVNAIQTIMRGHKYISYAVAELLTMD 136 Query: 121 P-VDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNN 179 P +++KPLHETLS REYEIFYKL QG+GVT+IADELCLSVKTVSTYR+RVLQKM+MT+N Sbjct: 137 PDTNADKPLHETLSAREYEIFYKLSQGEGVTKIADELCLSVKTVSTYRARVLQKMNMTSN 196 Query: 180 ADIIYYAIKNNLID 193 ADIIYYAIK NLID Sbjct: 197 ADIIYYAIKQNLID 210 >A6T1A2.1 A6T1A2_JANMA DNA-binding response regulator, LuxR family Length = 210 Score = 330 bits (845), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 161/194 (82%), Positives = 177/194 (91%), Gaps = 1/194 (0%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 V +FI+++P M+I GEA+TA+EAIRLVR QDWDIVLLDI MPDKSGVEVLKQIKREKPEL Sbjct: 17 VQYFIAQVPDMKIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKSGVEVLKQIKREKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELVNAI TILRGHKYIS+ VAELLT+E Sbjct: 77 PVLILSMHPESRYAVQILRSGASGYVQKEALAEELVNAIQTILRGHKYISHTVAELLTTE 136 Query: 121 -PVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTNN 179 +EKPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTVSTYR+RVLQKM+M NN Sbjct: 137 LDTSTEKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMENN 196 Query: 180 ADIIYYAIKNNLID 193 A IIYYAIK NLID Sbjct: 197 AGIIYYAIKQNLID 210 >A4G809.1 A4G809_HERAR Response regulator receiver, LuxR family Length = 210 Score = 324 bits (831), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 161/195 (82%), Positives = 177/195 (90%), Gaps = 3/195 (1%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 V +FI+++P M I GEA+TA+EAIRLVR QDWDIVLLDI MPDKSGVEVLKQIKREKPEL Sbjct: 17 VQYFIAQVPDMCIEGEAATAQEAIRLVRAQDWDIVLLDINMPDKSGVEVLKQIKREKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTSE 120 PVL+LSMHPESRYAVQ+LRSGASGYVQKEALA ELV AI TILRGHKYIS+ VAELLT+E Sbjct: 77 PVLILSMHPESRYAVQILRSGASGYVQKEALAEELVTAIQTILRGHKYISHTVAELLTAE 136 Query: 121 PVD--SEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMTN 178 VD ++KPLHETLS+REYEIFYKL QG GVT+IADELCLSVKTVSTYR+RVLQKM+M N Sbjct: 137 -VDPNADKPLHETLSKREYEIFYKLCQGHGVTKIADELCLSVKTVSTYRARVLQKMNMEN 195 Query: 179 NADIIYYAIKNNLID 193 NA IIYYAIK NLID Sbjct: 196 NAGIIYYAIKQNLID 210 >B2AG70.1 B2AG70_CUPTR RESPONSE REGULATOR, LuxR family Length = 210 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 100/196 (51%), Positives = 151/196 (77%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + FISE P +++ GEA + +E + +R ++D+++LDI+MPD++G++VLK I++ KP+L Sbjct: 17 LRQFISEEPDIQVTGEAGSGDEVMAQLRDGEFDVLVLDISMPDRNGIDVLKLIRQRKPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS +PE +YA+ ++R+GASGY+ KE+ +LV AI T+ +G +Y+S VA+LL Sbjct: 77 PVLILSTYPEDQYAINLIRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P +E+P+H+ LS+RE++IF KL +GQ V+ IADEL LSVKTVSTYRSR+L+KM M Sbjct: 137 LDKP--TEQPVHQMLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 NAD+ YYAIKN L++ Sbjct: 195 TNADLTYYAIKNGLVE 210 >Q0KFB6.1 Q0KFB6_CUPNH Response regulator, NarL-family Length = 210 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 99/196 (50%), Positives = 151/196 (77%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE P +++ GEA + ++ + +R ++D+++LDI+MPD++G++VLK I++ KPEL Sbjct: 17 LRQFLSEEPDIQVTGEAGSGDQVMAQLRDAEFDVLVLDISMPDRNGIDVLKLIRQRKPEL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS +PE +YA+ ++R+GASGY+ KE+ +LV AI T+ +G +Y+S VA+LL Sbjct: 77 PVLILSTYPEDQYAINLIRAGASGYLTKESAPDDLVKAIRTVAQGRRYVSATVADLLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P +E+P+H+ LS+RE++IF KL +GQ V+ IADEL LSVKTVSTYRSR+L+KM M Sbjct: 137 LDKP--TEQPVHQMLSEREFQIFCKLSRGQSVSVIADELFLSVKTVSTYRSRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 NAD+ YYAIKN L++ Sbjct: 195 TNADLTYYAIKNGLVE 210 >Q45416.1 Q45416_RALSO VsrD Length = 210 Score = 214 bits (546), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 150/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EE + +RT+ +D+V+LDI+MPD++G++ LK +++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEVMEQLRTEAFDVVVLDISMPDRNGIDTLKLVRQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210 >C6BKJ4.1 C6BKJ4_RALP1 Two component transcriptional regulator, LuxR family Length = 210 Score = 214 bits (545), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 102/196 (52%), Positives = 149/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EEA+ +RT +D+V+LDI+MPD++G++ LK ++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEAMEQLRTGAFDVVVLDISMPDRNGIDTLKLARQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSVIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210 >Q8Y2P3.1 Q8Y2P3_RALSO Response regulator transcription regulator protein Length = 210 Score = 213 bits (543), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 149/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EE + +RT +D+V+LDI+MPD++G++ LK +++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEVMEQLRTGTFDVVVLDISMPDRNGIDTLKLVRQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210 >D8NQP8.1 D8NQP8_RALSO Response regulator, LuxR family Length = 210 Score = 213 bits (543), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 101/196 (51%), Positives = 149/196 (76%), Gaps = 5/196 (2%) Query: 1 VHHFISEIPSMEIGGEASTAEEAIRLVRTQDWDIVLLDIAMPDKSGVEVLKQIKREKPEL 60 + F+SE +E+ GEA++ EE + +RT +D+V+LDI+MPD++G++ LK +++ P+L Sbjct: 17 LRQFLSEERDIEVAGEAASGEEVMEQLRTGAFDVVVLDISMPDRNGIDTLKLVRQRHPDL 76 Query: 61 PVLMLSMHPESRYAVQVLRSGASGYVQKEALATELVNAINTILRGHKYISYGVAELLTS- 119 PVL+LS PE +YA+ ++R+GASGY+ KE+ ELV AI T+ +G +Y+S VAELL Sbjct: 77 PVLILSTFPEDQYAINLIRAGASGYLTKESAPDELVKAIRTVSQGRRYVSPTVAELLIGG 136 Query: 120 --EPVDSEKPLHETLSQREYEIFYKLGQGQGVTQIADELCLSVKTVSTYRSRVLQKMSMT 177 +P D +PLH+TLS+RE++IF KL +GQ V+ IA+EL LSVKTVSTYR+R+L+KM M Sbjct: 137 LEKPTD--QPLHQTLSKREFQIFCKLARGQSVSIIAEELFLSVKTVSTYRTRILEKMGMK 194 Query: 178 NNADIIYYAIKNNLID 193 +NAD+ YYAIKN L++ Sbjct: 195 SNADLTYYAIKNGLVE 210