BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0296.p (126 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8INS6.1 D8INS6_HERSS Composite two-component regulatory (Sensor... 246 7e-64 A1VQR2.1 A1VQR2_POLNA Integral membrane sensor hybrid histidine ... 135 2e-30 Q1LDQ9.1 Q1LDQ9_RALME Putative two-component hybrid histidine ki... 110 8e-23 B3R9S7.1 B3R9S7_CUPTR Putative hybrid sensor histidine kinase 109 1e-22 B1M8F4.1 B1M8F4_METRJ Integral membrane sensor hybrid histidine ... 109 1e-22 C5T9R9.1 C5T9R9_ACIDE Histidine kinase 102 2e-20 C5T9E5.1 C5T9E5_ACIDE Histidine kinase (Fragment) 97 6e-19 B5JSX8.1 B5JSX8_9GAMM Periplasmic Sensor Hybrid Histidine Kinase 95 4e-18 Q5P351.1 Q5P351_AROAE Complex two-component hybrid sensor compon... 93 1e-17 B6IMK7.1 B6IMK7_RHOCS Sensor histidine kinase 92 2e-17 >D8INS6.1 D8INS6_HERSS Composite two-component regulatory (Sensor kinase and response regulator hybrid) transcription regulator protein EC=2.7.3.- Length = 604 Score = 246 bits (629), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 121/126 (96%), Positives = 122/126 (96%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG Sbjct: 479 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 538 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRLSGQA 120 TDAIA VRR+LGKPVSALLITGDTA ARLREAAESGIPMLHKPVAP Q WEQLQRLSGQA Sbjct: 539 TDAIAVVRRVLGKPVSALLITGDTAPARLREAAESGIPMLHKPVAPAQLWEQLQRLSGQA 598 Query: 121 RQAHPR 126 RQAHPR Sbjct: 599 RQAHPR 604 >A1VQR2.1 A1VQR2_POLNA Integral membrane sensor hybrid histidine kinase Length = 589 Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 67/116 (57%), Positives = 83/116 (71%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 + VL++DDD+ V MAQLL+ WGCRC A S+ A ALA+ H P +VISDYRLR+ G Sbjct: 467 MHVLVVDDDEAVVLGMAQLLQGWGCRCDTAGSIADALALARMHTPNVVISDYRLREQRTG 526 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRL 116 +AIAA+R MLGK + AL+ITGDTA RLREA S +P+LHKPVAP Q + L L Sbjct: 527 AEAIAALRGMLGKQIPALMITGDTAPERLREAMASDVPLLHKPVAPDQLYRALGEL 582 >Q1LDQ9.1 Q1LDQ9_RALME Putative two-component hybrid histidine kinase, periplasmic sensor Length = 591 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 53/109 (48%), Positives = 73/109 (66%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 LRVL+IDDD +R++MA+LL W C C AES ++A L P+L+++DYRLR H NG Sbjct: 465 LRVLVIDDDPAIRQAMAELLAAWDCDCRPAESEDEALGLLGTFTPDLILADYRLRGHRNG 524 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQF 109 +AIAA+R + + A++ITGDTA +LR G +LHKPV PG+ Sbjct: 525 HEAIAAIRERTSQALPAIIITGDTAADQLRNVHAGGTALLHKPVVPGEL 573 >B3R9S7.1 B3R9S7_CUPTR Putative hybrid sensor histidine kinase Length = 613 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 55/106 (51%), Positives = 71/106 (66%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 L+VL+IDDD+ +R +M++LL W C C ES EQA A P LV++DYRLR H G Sbjct: 479 LQVLVIDDDEAIRSAMSELLSAWRCECRTVESEEQALAALASFTPALVLADYRLRGHRTG 538 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAP 106 A+ A+R+ LG+ V A++ITGDTA RLR A SG +LHKPV P Sbjct: 539 QQALDAIRQRLGRHVPAIIITGDTAADRLRTAHASGTALLHKPVVP 584 >B1M8F4.1 B1M8F4_METRJ Integral membrane sensor hybrid histidine kinase Length = 621 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 54/106 (50%), Positives = 72/106 (67%), Gaps = 1/106 (0%) Query: 2 RVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALA-QQHLPELVISDYRLRQHSNG 60 R+L++DDD VR++M LL WGC C E + L Q P+ +I DYRLR+ G Sbjct: 477 RILIVDDDAIVRDAMVALLSGWGCLCWAFEDPTEVTRLPWQGPPPDALICDYRLRRDQTG 536 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAP 106 +AIA +R+ G+PV A+LITGDTA R+REA+ESGIP++HKPV P Sbjct: 537 AEAIATLRQHWGRPVPAILITGDTAPVRMREASESGIPLIHKPVRP 582 >C5T9R9.1 C5T9R9_ACIDE Histidine kinase Length = 579 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 56/116 (48%), Positives = 78/116 (67%), Gaps = 2/116 (1%) Query: 3 VLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEA-LAQQHL-PELVISDYRLRQHSNG 60 VL+IDDD +RE++ LE WGC A+ ++ A A LA + L P+L+++DYRLR + G Sbjct: 459 VLVIDDDPGLRETLGSALEVWGCTAVAADGVQAALATLASRRLAPDLIVADYRLRNQATG 518 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRL 116 +AIAAVR+ LG+ V A ++TGDTA RL+EAA +G +LHKPV P L +L Sbjct: 519 IEAIAAVRQALGRQVPAAILTGDTAPQRLKEAAGAGHLLLHKPVQPASLRAALAKL 574 >C5T9E5.1 C5T9E5_ACIDE Histidine kinase (Fragment) Length = 600 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 50/116 (43%), Positives = 70/116 (60%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNG 60 L VL IDDD+ VR M LL+ WGC C A+S A +P+L+I+D+RLR G Sbjct: 454 LHVLAIDDDEAVRLGMQSLLQSWGCLCTVADSSADAIEQLGDDVPDLIITDFRLRHDETG 513 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRL 116 + A+R LG V A+++TGDT+ RLR+A + +LHKPV+ GQ E + +L Sbjct: 514 KQVLQALRTYLGIAVPAIIMTGDTSPQRLRDAQTTSALLLHKPVSTGQLREAMVQL 569 >B5JSX8.1 B5JSX8_9GAMM Periplasmic Sensor Hybrid Histidine Kinase Length = 585 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 67/106 (63%) Query: 3 VLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQAEALAQQHLPELVISDYRLRQHSNGTD 62 VL++DDD+ + E M +LE WGC CAESL+QA L + P+++ISD+ L NG Sbjct: 465 VLVLDDDRAILEGMNTVLEKWGCHSQCAESLDQALKLCETQTPDIIISDFNLSGDQNGLT 524 Query: 63 AIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQ 108 +I A+R+ + + A++I+G+ L +A ++G +L KPV PG+ Sbjct: 525 SIEALRKQCNRNIPAVIISGELNHPELEQAKQTGWMVLSKPVKPGE 570 >Q5P351.1 Q5P351_AROAE Complex two-component hybrid sensor component containing histidine kinase and response receiver domain Length = 632 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/119 (44%), Positives = 67/119 (56%), Gaps = 2/119 (1%) Query: 1 LRVLLIDDDQRVRESMAQLLEHWGCRCHCAESLEQA-EALAQQ-HLPELVISDYRLRQHS 58 +RV L+DDD + M LL WGC +E E LA+ H P+L+ISDYRL +S Sbjct: 508 IRVALVDDDPLAQSGMRSLLTSWGCEVTAGSDIESVLETLARSGHEPQLIISDYRLHGNS 567 Query: 59 NGTDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQFWEQLQRLS 117 NG DAI R G+ + A LI+GDTA LR A + +LHKPV P + L RLS Sbjct: 568 NGIDAIRVTRARYGENLPAALISGDTAPETLRLAQGESLALLHKPVRPARLRALLNRLS 626 >B6IMK7.1 B6IMK7_RHOCS Sensor histidine kinase Length = 503 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/109 (47%), Positives = 65/109 (59%), Gaps = 2/109 (1%) Query: 3 VLLIDDDQRVRESMAQLLEHWGCRCHCAES-LEQAEAL-AQQHLPELVISDYRLRQHSNG 60 VL+IDDD V + +LE WG R A S LE E L LP+L+I+DYRLR+ G Sbjct: 386 VLVIDDDALVLMGLVAMLERWGARTLSASSGLEAVEKLRGSTTLPDLIIADYRLRRGETG 445 Query: 61 TDAIAAVRRMLGKPVSALLITGDTARARLREAAESGIPMLHKPVAPGQF 109 AI VRR G P+ ALL+TGDTA LR+A + +LHKPV+P Sbjct: 446 FAAIDGVRRAAGHPIPALLLTGDTAPDILRDARSRDLRLLHKPVSPADL 494