BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0288.p (92 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8INT2.1 D8INT2_HERSS Preprotein translocase transmembrane protein 183 8e-45 F1VY42.1 F1VY42_9BURK Preprotein translocase subunit YajC 161 4e-38 A6SUU5.1 A6SUU5_JANMA Preprotein translocase subunit YajC 149 1e-34 Q1LJ58.1 Q1LJ58_RALME Preprotein translocase auxiliary subunit Y... 145 3e-33 A4G1Z4.1 A4G1Z4_HERAR Putative Preprotein translocase subunit YajC 143 9e-33 D8N6V0.1 D8N6V0_RALSO Protein translocase auxillary subunit 142 2e-32 B5SHU2.1 B5SHU2_RALSO Preprotein translocase subunit yajc 142 2e-32 B5RVV8.1 B5RVV8_RALSO Preprotein translocase subunit yajc 142 2e-32 D8NNY9.1 D8NNY9_RALSO Protein translocase auxillary subunit 142 2e-32 A9AGF0.1 A9AGF0_BURM1 Preprotein translocase, YajC subunit 142 2e-32 >D8INT2.1 D8INT2_HERSS Preprotein translocase transmembrane protein Length = 110 Score = 183 bits (464), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 92/92 (100%), Positives = 92/92 (100%) Query: 1 MGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 60 MGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD Sbjct: 19 MGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 78 Query: 61 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL Sbjct: 79 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 110 >F1VY42.1 F1VY42_9BURK Preprotein translocase subunit YajC Length = 109 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/91 (83%), Positives = 86/91 (94%) Query: 2 GNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVADG 61 NL SFLPIILMFVVLYFLMIRPQMKRQKEQK+MMDALAKGDEVVTSGG+LG++TKV D Sbjct: 19 SNLTSFLPIILMFVVLYFLMIRPQMKRQKEQKSMMDALAKGDEVVTSGGILGKVTKVTDA 78 Query: 62 YITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 Y+TIEV++GTE++VQKGAV+TLLPKGTIK L Sbjct: 79 YLTIEVADGTEVLVQKGAVSTLLPKGTIKSL 109 >A6SUU5.1 A6SUU5_JANMA Preprotein translocase subunit YajC Length = 107 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 84/92 (91%) Query: 1 MGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 60 +GNL F+PIILMFVVLYFLMIRPQMKRQKE KAM++A+ +GDEVVTSGG+LG+ITKV+D Sbjct: 16 LGNLTQFVPIILMFVVLYFLMIRPQMKRQKEHKAMIEAVTRGDEVVTSGGVLGKITKVSD 75 Query: 61 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 Y+++EV +GTEI++QK AVTTLLPKGTIK L Sbjct: 76 VYLSLEVQDGTEIVIQKSAVTTLLPKGTIKSL 107 >Q1LJ58.1 Q1LJ58_RALME Preprotein translocase auxiliary subunit YajC transmembrane Length = 108 Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/89 (75%), Positives = 80/89 (89%) Query: 4 LASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVADGYI 63 L SFLPIILMF VL+F+MIRPQMKRQKE KAMM+ALAK DEVVT+GG+LGR+TKV + Y+ Sbjct: 20 LMSFLPIILMFAVLWFIMIRPQMKRQKETKAMMEALAKNDEVVTAGGILGRVTKVNENYV 79 Query: 64 TIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 T+EV+EGTEI VQK AVTT+LPKG++K L Sbjct: 80 TLEVAEGTEITVQKNAVTTVLPKGSLKSL 108 >A4G1Z4.1 A4G1Z4_HERAR Putative Preprotein translocase subunit YajC Length = 108 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 65/92 (70%), Positives = 82/92 (89%) Query: 1 MGNLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 60 MG+L F+PI+LMFV LYFLMIRPQMKRQKE K M++A+ +GDEVVTSGG+LG++TKV+D Sbjct: 17 MGSLTQFVPILLMFVALYFLMIRPQMKRQKEHKLMVEAVTRGDEVVTSGGVLGKVTKVSD 76 Query: 61 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 Y++IEV EGTE+++QK A+TTLLPKGTIK L Sbjct: 77 VYVSIEVQEGTELVLQKSAITTLLPKGTIKSL 108 >D8N6V0.1 D8N6V0_RALSO Protein translocase auxillary subunit Length = 111 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 67/89 (75%), Positives = 79/89 (88%) Query: 4 LASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVADGYI 63 L SFLPIILMFVVL+F+MIRPQMKRQKE K M++ALAKGDEVVTSGG+LG++TKV D YI Sbjct: 23 LMSFLPIILMFVVLWFIMIRPQMKRQKETKTMLEALAKGDEVVTSGGILGKVTKVTDQYI 82 Query: 64 TIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 T+EV+ TE+ VQK AVTT+LPKGT+K L Sbjct: 83 TVEVAPNTELTVQKNAVTTVLPKGTLKSL 111 >B5SHU2.1 B5SHU2_RALSO Preprotein translocase subunit yajc Length = 111 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 82/92 (89%), Gaps = 1/92 (1%) Query: 2 GN-LASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 60 GN L SFLPIILMFVVL+F+MIRPQMKRQKE K M++ALAKGDEVVTSGG+LG++TKVAD Sbjct: 20 GNGLMSFLPIILMFVVLWFIMIRPQMKRQKETKTMLEALAKGDEVVTSGGILGKVTKVAD 79 Query: 61 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 Y+T+EV+ TE+ VQK AVTT+LPKGT+K L Sbjct: 80 QYVTVEVAPNTELTVQKNAVTTVLPKGTLKSL 111 >B5RVV8.1 B5RVV8_RALSO Preprotein translocase subunit yajc Length = 111 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 82/92 (89%), Gaps = 1/92 (1%) Query: 2 GN-LASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 60 GN L SFLPIILMFVVL+F+MIRPQMKRQKE K M++ALAKGDEVVTSGG+LG++TKVAD Sbjct: 20 GNGLMSFLPIILMFVVLWFIMIRPQMKRQKETKTMLEALAKGDEVVTSGGILGKVTKVAD 79 Query: 61 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 Y+T+EV+ TE+ VQK AVTT+LPKGT+K L Sbjct: 80 QYVTVEVAPNTELTVQKNAVTTVLPKGTLKSL 111 >D8NNY9.1 D8NNY9_RALSO Protein translocase auxillary subunit Length = 111 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 69/92 (75%), Positives = 82/92 (89%), Gaps = 1/92 (1%) Query: 2 GN-LASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVAD 60 GN L SFLPIILMFVVL+F+MIRPQMKRQKE KAM++ALAKGDEVVTSGG+LG++TKVAD Sbjct: 20 GNGLMSFLPIILMFVVLWFIMIRPQMKRQKETKAMLEALAKGDEVVTSGGILGKVTKVAD 79 Query: 61 GYITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 Y+ +EV+ TE+ VQK AVTT+LPKGT+K L Sbjct: 80 QYVAVEVAPNTELTVQKNAVTTVLPKGTLKSL 111 >A9AGF0.1 A9AGF0_BURM1 Preprotein translocase, YajC subunit Length = 107 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 65/90 (72%), Positives = 81/90 (90%) Query: 3 NLASFLPIILMFVVLYFLMIRPQMKRQKEQKAMMDALAKGDEVVTSGGMLGRITKVADGY 62 +L SFLP+ILMF VLYF+MIRPQMKRQKE + M+ A+AKGDEVVTSGG++G++TKV++GY Sbjct: 18 SLMSFLPLILMFAVLYFIMIRPQMKRQKEHRNMLAAMAKGDEVVTSGGLVGKVTKVSEGY 77 Query: 63 ITIEVSEGTEIIVQKGAVTTLLPKGTIKGL 92 I +E++EGTEI VQK AVTT+LPKGTIK L Sbjct: 78 IGVEIAEGTEITVQKAAVTTILPKGTIKSL 107