BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0279.p (255 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8INU0.1 D8INU0_HERSS Transcription regulator protein 500 e-140 Q7CZ91.2 Q7CZ91_AGRT5 Transcriptional regulator, AraC family 179 4e-43 E0SL10.1 E0SL10_DICD3 Transcriptional regulator 171 6e-41 E5YAH1.1 E5YAH1_BILWA AraC family Bacterial regulatory helix-tur... 170 1e-40 F0L393.1 F0L393_9RHIZ Transcriptional regulator, AraC family 170 2e-40 D2C2E1.1 D2C2E1_DICD5 Transcriptional regulator, AraC family 170 2e-40 Q48G43.1 Q48G43_PSE14 Transcriptional regulator 158 5e-37 E7PLQ3.1 E7PLQ3_PSESG Transcriptional regulator 158 5e-37 E7P804.1 E7P804_PSESG Transcriptional regulator 158 5e-37 Q4ZY04.1 Q4ZY04_PSEU2 Helix-turn-helix, AraC type 155 4e-36 >D8INU0.1 D8INU0_HERSS Transcription regulator protein Length = 255 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 253/255 (99%), Positives = 253/255 (99%) Query: 1 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVAT 60 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRAD AT Sbjct: 1 MSLPSLPHPDLAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADAAT 60 Query: 61 GAFVEPGARHATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVS 120 GAFVEPGARHATRAGGENRSLVLDLAPATVN LQLEQLAQRPFLPLSVAAGKLVEFMAVS Sbjct: 61 GAFVEPGARHATRAGGENRSLVLDLAPATVNALQLEQLAQRPFLPLSVAAGKLVEFMAVS 120 Query: 121 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS 180 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS Sbjct: 121 LAQARSSPAMLQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAIS 180 Query: 181 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR 240 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR Sbjct: 181 PSRLHEWFRAELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRR 240 Query: 241 LRGVTPASYRKNYLE 255 LRGVTPASYRKNYLE Sbjct: 241 LRGVTPASYRKNYLE 255 >Q7CZ91.2 Q7CZ91_AGRT5 Transcriptional regulator, AraC family Length = 244 Score = 179 bits (453), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 94/238 (39%), Positives = 136/238 (57%) Query: 15 LAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRA 74 +A +R+YR E RH F Q+VLP++GHL +D+ GR+ G F+ A H A Sbjct: 3 VASADIRTYRQERPRERHGFVQIVLPVSGHLRIDVAGRQDELSTGRGVFIHRDAPHTQEA 62 Query: 75 GGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHW 134 N SLV+D+ + V+ LE+ A+ PFL ++ +L+ +M + + W Sbjct: 63 TDINHSLVVDIDESVVSERTLEKFARTPFLDIAPDTRQLITYMRGVIGTDGRRDDVTGLW 122 Query: 135 VPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 PLL+D+LA RLR + A V A+ PWT+ +A A+IS SRLH F E Sbjct: 123 APLLVDSLANERADIRKRLRWLGAVVGAEPFFPWTIDMLAACASISESRLHALFIEEFGL 182 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKN 252 SP WL +RM + C LLR S+LP+A++A R G++DQ+ALT A+R G TPA+YR+N Sbjct: 183 SPHRWLVGLRMDKVCTLLRESSLPIAEIALRSGFSDQTALTRALRNAVGETPAAYRRN 240 >E0SL10.1 E0SL10_DICD3 Transcriptional regulator Length = 254 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/241 (39%), Positives = 142/241 (58%) Query: 11 LAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARH 70 + P L +R Y HRHD QLVLPL+G L++DI G+ + D A+V+ H Sbjct: 2 VIPNAFMLSIRGYGALEAPHRHDHSQLVLPLSGSLSIDISGQSAQLDRRLAAYVDRHFPH 61 Query: 71 ATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAM 130 A ++ G N+ L++D+ P ++ L + LA FL L+ A L+++M L + R + Sbjct: 62 AQQSRGANQFLIVDVEPDHLDPLVADYLASCRFLSLAPEANNLIDYMGTMLVKGRVPDSR 121 Query: 131 LQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRA 190 +Q W PLLLD L PQ SRL +++ +++ WT MA+ A +S SRLH FR Sbjct: 122 IQLWAPLLLDALTGEGPQPRSRLAGLISAIDSDPFLDWTTEFMAQQAGMSVSRLHAVFRR 181 Query: 191 ELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYR 250 E D++P AWLA VR+ + L T+ + +A++A R YADQSALT AMR+ G+TPA++R Sbjct: 182 ERDTTPHAWLARVRLGRVQHWLATTNVSIAEIAYRGRYADQSALTRAMRKATGLTPAAFR 241 Query: 251 K 251 + Sbjct: 242 Q 242 >E5YAH1.1 E5YAH1_BILWA AraC family Bacterial regulatory helix-turn-helix protein Length = 256 Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 102/235 (43%), Positives = 135/235 (57%), Gaps = 1/235 (0%) Query: 17 QLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGG 76 ++ SY E RH Q VLP+AG L + IGG EGR + AFV PG H+ A Sbjct: 4 RIDFLSYEGERNNERHPHAQFVLPIAGELEISIGGAEGRLTPSCAAFVAPGVPHSQLATV 63 Query: 77 ENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVP 136 N L+++ A EQLA++ FLP+S A L+ F +S + S P Q W+P Sbjct: 64 SNAFLIVNCDLAECGVPAAEQLAEQIFLPVSEATRHLIGFAELSRDRF-SQPGTTQCWMP 122 Query: 137 LLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSSP 196 LLL++ +R SRL + ++A PWTV +MA ISPSRLH R+E SP Sbjct: 123 LLLNSFLERPVCRPSRLAVLERLIDAHPGAPWTVGEMARRIGISPSRLHALSRSEWGLSP 182 Query: 197 RAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 +AWLAE R+ + L S LP+A +A R GYADQSALT AM+RL G+TPA+YR+ Sbjct: 183 QAWLAERRIGHVRKWLAESDLPIADLALRAGYADQSALTRAMQRLTGLTPAAYRR 237 >F0L393.1 F0L393_9RHIZ Transcriptional regulator, AraC family Length = 252 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 128/238 (53%) Query: 16 AQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAG 75 A +R+Y E RH F Q+VLP++G L +D+ G + F+ P H A Sbjct: 12 ASADIRTYTQERPKERHGFVQIVLPVSGCLRIDVAGLQDELSTGRAVFIHPNTSHTQEAT 71 Query: 76 GENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWV 135 NRSLV+D+ V LE+ +PFL ++ +L+ +M + + W Sbjct: 72 TINRSLVVDIDETAVPEQVLERFVHKPFLDIARDTRQLIAYMRGVIGSDGPREDIANLWA 131 Query: 136 PLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSS 195 PLL+D+LA RL + V A+ PWT+ +A AAIS SRLH F E + Sbjct: 132 PLLIDSLATEKTDIRHRLHALGEIVRAEPFFPWTIETLASCAAISDSRLHALFLEEFNLP 191 Query: 196 PRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRKNY 253 P WLAE+RM + C LLR S LP+A++A R G++DQ+ALT AMR G TPA+YR+ + Sbjct: 192 PHRWLAELRMDKVCALLRHSTLPIAEIALRAGFSDQTALTRAMRNAMGKTPAAYRRAF 249 >D2C2E1.1 D2C2E1_DICD5 Transcriptional regulator, AraC family Length = 254 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/245 (39%), Positives = 141/245 (57%) Query: 11 LAPPLAQLHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARH 70 P L +R Y HRH+ QLVLPL+G L +DI G+ + D A+V+ H Sbjct: 2 FVPGAFMLSIRGYGALESPHRHEHAQLVLPLSGSLNIDISGQSAQLDRRLAAYVDRDFPH 61 Query: 71 ATRAGGENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAM 130 A ++ GEN+ L++DL + + + LA FL L+ A L+++M L + R + Sbjct: 62 AQQSHGENQFLIVDLESSHLEPWVEDYLASCRFLKLAPEANHLIDYMGGMLVKGRVPISR 121 Query: 131 LQHWVPLLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRA 190 +Q W PLLLD L + SRL +++ +++ WT+ MA+ +S SRLH FR Sbjct: 122 IQLWTPLLLDALTGQGLPPRSRLAGLISAIDSDPFLDWTIEFMAQQVGMSVSRLHAVFRN 181 Query: 191 ELDSSPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYR 250 ELD++P AWLA VR+ + L T+ LP+A++A R GYADQSALT AMR+ G+TPA +R Sbjct: 182 ELDNTPHAWLAHVRLGRVQHWLATTNLPIAEIAYRGGYADQSALTRAMRKATGLTPAVFR 241 Query: 251 KNYLE 255 + E Sbjct: 242 QQLQE 246 >Q48G43.1 Q48G43_PSE14 Transcriptional regulator Length = 242 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 144/237 (60%), Gaps = 8/237 (3%) Query: 18 LHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGGE 77 L +RSY+ +S H HD QLVLP+ G + +D+ GR G D + A V+PG+RH+ + Sbjct: 5 LEVRSYKTQSPQHCHDHTQLVLPIRGRMEIDVDGRGGFIDQSLAALVKPGSRHSQDTHVD 64 Query: 78 NRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVPL 137 +R LVLD AP T+ T+Q+ +LA++ ++P+S A +L+EF + Q + A + L Sbjct: 65 SRFLVLDCAPTTLETIQMGRLAEKIYVPVSPATRRLIEFAELIGNQQLAIAASQLGPLLL 124 Query: 138 LL---DTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 DT +P + +++A++ A W+ MA+ A +S S+LH+ FR Sbjct: 125 SSLGSDTCCFSSP-----IEQLIARLRANPGAHWSNQAMAQVANMSMSQLHQRFRQLFAM 179 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 SP+AWL E+R+ +A + LR ++LP+A++A R G++DQ++LT M+RL TPA YRK Sbjct: 180 SPQAWLTELRIQEAKRWLRGTSLPIAEIALRAGFSDQASLTRTMQRLSATTPAVYRK 236 >E7PLQ3.1 E7PLQ3_PSESG Transcriptional regulator Length = 242 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 144/237 (60%), Gaps = 8/237 (3%) Query: 18 LHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGGE 77 L +RSY+ +S H HD QLVLP+ G + +D+ GR G D + A V+PG+RH+ + Sbjct: 5 LEVRSYKTQSPQHCHDHTQLVLPIRGRMEIDVDGRGGFIDQSLAALVKPGSRHSQDTHVD 64 Query: 78 NRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVPL 137 +R LVLD AP T+ T+Q+ +LA++ ++P+S A +L+EF + Q + A + L Sbjct: 65 SRFLVLDCAPTTLETIQMGRLAEKIYVPVSPATRRLIEFAELIGNQQLAIAASQLGPLLL 124 Query: 138 LL---DTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 DT +P + +++A++ A W+ MA+ A +S S+LH+ FR Sbjct: 125 SSLGSDTCCFSSP-----IEQLIARLRANPGAHWSNQAMAQVANMSMSQLHQRFRQLFAM 179 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 SP+AWL E+R+ +A + LR ++LP+A++A R G++DQ++LT M+RL TPA YRK Sbjct: 180 SPQAWLTELRIQEAKRWLRGTSLPIAEIALRAGFSDQASLTRTMQRLSATTPAVYRK 236 >E7P804.1 E7P804_PSESG Transcriptional regulator Length = 242 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 144/237 (60%), Gaps = 8/237 (3%) Query: 18 LHLRSYRDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGGE 77 L +RSY+ +S H HD QLVLP+ G + +D+ GR G D + A V+PG+RH+ + Sbjct: 5 LEVRSYKTQSPQHCHDHTQLVLPIRGRMEIDVDGRGGFIDQSLAALVKPGSRHSQDTHVD 64 Query: 78 NRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVPL 137 +R LVLD AP T+ T+Q+ +LA++ ++P+S A +L+EF + Q + A + L Sbjct: 65 SRFLVLDCAPTTLETIQMGRLAEKIYVPVSPATRRLIEFAELIGNQQLAIAASQLGPLLL 124 Query: 138 LL---DTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDS 194 DT +P + +++A++ A W+ MA+ A +S S+LH+ FR Sbjct: 125 SSLGSDTCCFSSP-----IEQLIARLRANPGAHWSNQAMAQVANMSMSQLHQRFRQLFAM 179 Query: 195 SPRAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 SP+AWL E+R+ +A + LR ++LP+A++A R G++DQ++LT M+RL TPA YRK Sbjct: 180 SPQAWLTELRIQEAKRWLRGTSLPIAEIALRAGFSDQASLTRTMQRLSATTPAVYRK 236 >Q4ZY04.1 Q4ZY04_PSEU2 Helix-turn-helix, AraC type Length = 243 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 90/235 (38%), Positives = 145/235 (61%), Gaps = 3/235 (1%) Query: 18 LHLRSY-RDESLAHRHDFPQLVLPLAGHLALDIGGREGRADVATGAFVEPGARHATRAGG 76 L +RSY R E H H+ QLVLP+ G + +D+ GR G D + A V+PG+ H+ + Sbjct: 5 LEVRSYERKEPHLHHHEHAQLVLPIRGEMEIDVNGRGGCIDQSLAALVKPGSVHSQHSDV 64 Query: 77 ENRSLVLDLAPATVNTLQLEQLAQRPFLPLSVAAGKLVEFMAVSLAQARSSPAMLQHWVP 136 ++R LVLD AP + TLQ+ +LA+R ++P+ A +L+EF A + A+ S A Q P Sbjct: 65 DSRFLVLDCAPTILETLQIGRLARRIYVPIPPATRRLIEF-ADLIGNAQLSIAASQ-LAP 122 Query: 137 LLLDTLAQRTPQALSRLRRMMAQVEAQVAHPWTVAQMAEAAAISPSRLHEWFRAELDSSP 196 LLL +L + +++A++ A W+ MA+ A +S S+LH+ FR + SP Sbjct: 123 LLLSSLNPDISCFSDPMEQLIARLRADPGANWSNEAMAQVAKMSMSQLHQRFRLLFEISP 182 Query: 197 RAWLAEVRMAQACQLLRTSALPLAQVAQRCGYADQSALTHAMRRLRGVTPASYRK 251 +AWL +R+ +A + LR ++LP++++A R G++DQ++LT M+R+ TPA+YRK Sbjct: 183 QAWLTRLRIQEAQRWLRGTSLPISEIALRAGFSDQASLTRTMQRVSATTPAAYRK 237