BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0157.p (67 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT70.1 D8IT70_HERSS DNA-directed RNA polymerase subunit omega ... 137 4e-31 A6SXM0.1 RPOZ_JANMA DNA-directed RNA polymerase subunit omega EC... 132 2e-29 A4G6Y1.1 RPOZ_HERAR DNA-directed RNA polymerase subunit omega EC... 130 8e-29 D8P132.1 D8P132_RALSO DNA-directed RNA polymerase subunit omega ... 128 2e-28 B5SF65.1 B5SF65_RALSO DNA-directed RNA polymerase subunit omega ... 128 2e-28 B5S266.1 B5S266_RALSO DNA-directed RNA polymerase subunit omega ... 128 2e-28 A3RR46.1 A3RR46_RALSO DNA-directed RNA polymerase subunit omega ... 128 2e-28 Q8XXG0.1 RPOZ_RALSO DNA-directed RNA polymerase subunit omega EC... 128 2e-28 F1VV05.1 F1VV05_9BURK DNA-directed RNA polymerase omega subunit 127 4e-28 C6BJZ0.1 C6BJZ0_RALP1 DNA-directed RNA polymerase subunit omega ... 127 4e-28 >D8IT70.1 D8IT70_HERSS DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 137 bits (346), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 67/67 (100%), Positives = 67/67 (100%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE Sbjct: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 Query: 61 MLKKVPA 67 MLKKVPA Sbjct: 61 MLKKVPA 67 >A6SXM0.1 RPOZ_JANMA DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 63/67 (94%), Positives = 65/67 (97%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTV ALREIAAG VG+E Sbjct: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVIALREIAAGHVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >A4G6Y1.1 RPOZ_HERAR DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 130 bits (326), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 62/67 (92%), Positives = 64/67 (95%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARITIEDCLKQIPNRFQLTL ATYRARQLLQGHTPKVDAKDKPTV ALREIAAG VG+E Sbjct: 1 MARITIEDCLKQIPNRFQLTLCATYRARQLLQGHTPKVDAKDKPTVIALREIAAGHVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >D8P132.1 D8P132_RALSO DNA-directed RNA polymerase subunit omega 3 EC=2.7.7.6 Length = 67 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/67 (88%), Positives = 66/67 (98%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARIT+EDCLKQIPNRF+L L+ATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VG+E Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >B5SF65.1 B5SF65_RALSO DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/67 (88%), Positives = 66/67 (98%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARIT+EDCLKQIPNRF+L L+ATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VG+E Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >B5S266.1 B5S266_RALSO DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/67 (88%), Positives = 66/67 (98%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARIT+EDCLKQIPNRF+L L+ATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VG+E Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >A3RR46.1 A3RR46_RALSO DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/67 (88%), Positives = 66/67 (98%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARIT+EDCLKQIPNRF+L L+ATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VG+E Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >Q8XXG0.1 RPOZ_RALSO DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/67 (88%), Positives = 66/67 (98%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARIT+EDCLKQIPNRF+L L+ATYRARQL+QGHTPKVDAKDKPTVTALREIAAG+VG+E Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIAAGQVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67 >F1VV05.1 F1VV05_9BURK DNA-directed RNA polymerase omega subunit Length = 67 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/66 (92%), Positives = 63/66 (95%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARITIEDC K IPNRFQLTL+ATYRARQLLQGHTPKVDAKDKPTV ALREIAAGKVG+E Sbjct: 1 MARITIEDCTKYIPNRFQLTLAATYRARQLLQGHTPKVDAKDKPTVVALREIAAGKVGIE 60 Query: 61 MLKKVP 66 MLKKVP Sbjct: 61 MLKKVP 66 >C6BJZ0.1 C6BJZ0_RALP1 DNA-directed RNA polymerase subunit omega EC=2.7.7.6 Length = 67 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 58/67 (86%), Positives = 66/67 (98%) Query: 1 MARITIEDCLKQIPNRFQLTLSATYRARQLLQGHTPKVDAKDKPTVTALREIAAGKVGVE 60 MARIT+EDCLKQIPNRF+L L+ATYRARQL+QGHTPKVDAKDKPTVTALREIA+G+VG+E Sbjct: 1 MARITVEDCLKQIPNRFELALAATYRARQLVQGHTPKVDAKDKPTVTALREIASGQVGIE 60 Query: 61 MLKKVPA 67 MLKKVP+ Sbjct: 61 MLKKVPS 67