BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0132.p (253 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT94.1 D8IT94_HERSS Oxidative stress resistance two component ... 511 e-143 F1W040.1 F1W040_9BURK Two-component system response regulator OmpR 418 e-115 A4G6C0.1 A4G6C0_HERAR Transcriptional regulatory protein OmpR 412 e-113 A6SXV6.1 A6SXV6_JANMA Oxidative stress resistance two-components... 412 e-113 Q472E5.1 Q472E5_CUPPJ Two component transcriptional regulator, w... 386 e-105 Q0KBM3.1 Q0KBM3_CUPNH Response regulator, OmpR-family 386 e-105 B3R4V0.1 B3R4V0_CUPTR Response regulator in two-component regula... 386 e-105 Q1LM00.1 Q1LM00_RALME Two-component transcriptional regulator, w... 385 e-105 Q8XYV8.1 Q8XYV8_RALSO Response regulator in two-component regula... 384 e-105 B5SKC1.1 B5SKC1_RALSO Oxidative stress resistance two-component ... 384 e-105 >D8IT94.1 D8IT94_HERSS Oxidative stress resistance two component response regulator protein Length = 253 Score = 511 bits (1317), Expect = e-143, Method: Compositional matrix adjust. Identities = 253/253 (100%), Positives = 253/253 (100%) Query: 1 MNTTNGNNSNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRE 60 MNTTNGNNSNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRE Sbjct: 1 MNTTNGNNSNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRE 60 Query: 61 RYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPF 120 RYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPF Sbjct: 61 RYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPF 120 Query: 121 NPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEF 180 NPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEF Sbjct: 121 NPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEF 180 Query: 181 SVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVW 240 SVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVW Sbjct: 181 SVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVW 240 Query: 241 GLGYVFIPEGKPR 253 GLGYVFIPEGKPR Sbjct: 241 GLGYVFIPEGKPR 253 >F1W040.1 F1W040_9BURK Two-component system response regulator OmpR Length = 253 Score = 418 bits (1075), Expect = e-115, Method: Compositional matrix adjust. Identities = 215/253 (84%), Positives = 239/253 (94%) Query: 1 MNTTNGNNSNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRE 60 MNTT + + T + +Q K+LVVDDDIRLRDLLRRYL EQGFNV+TAEN+Q MNKLW+RE Sbjct: 1 MNTTPNSATPATPTGHQPKILVVDDDIRLRDLLRRYLAEQGFNVITAENSQTMNKLWLRE 60 Query: 61 RYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPF 120 RYDLLVLDLMLPGEDGL+ICRRLRGAGD TPIIMLTAKGEDVDRI+GLEMGADDYLPKPF Sbjct: 61 RYDLLVLDLMLPGEDGLSICRRLRGAGDMTPIIMLTAKGEDVDRIVGLEMGADDYLPKPF 120 Query: 121 NPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEF 180 NPRELVARI+AVLRRK PDELPGAPSE P++FEFG+F+LDLGTRTLKK+G +++LTTGEF Sbjct: 121 NPRELVARISAVLRRKAPDELPGAPSERPQSFEFGEFVLDLGTRTLKKSGVSVALTTGEF 180 Query: 181 SVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVW 240 SVLKVFAR+ARQPLSREKLMEMARGREYEV+DRSLDVQISRLRKLIEPDP++PLYIQTVW Sbjct: 181 SVLKVFARHARQPLSREKLMEMARGREYEVYDRSLDVQISRLRKLIEPDPSSPLYIQTVW 240 Query: 241 GLGYVFIPEGKPR 253 GLGYVFIPEG+PR Sbjct: 241 GLGYVFIPEGQPR 253 >A4G6C0.1 A4G6C0_HERAR Transcriptional regulatory protein OmpR Length = 255 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 217/255 (85%), Positives = 239/255 (93%), Gaps = 2/255 (0%) Query: 1 MNTTN--GNNSNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWI 58 MNTTN + +T+++Q KVLVVDDD+RLRDLLRRYL+EQGFNVVTAE+AQAMNKLW+ Sbjct: 1 MNTTNVPMKETGHSTNSHQTKVLVVDDDLRLRDLLRRYLSEQGFNVVTAESAQAMNKLWL 60 Query: 59 RERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPK 118 RERYDLLVLDLMLPGEDGL+ICRRLRGAGD+TPIIMLTAKGEDVDRI+GLEMGADDY+ K Sbjct: 61 RERYDLLVLDLMLPGEDGLSICRRLRGAGDKTPIIMLTAKGEDVDRIVGLEMGADDYIAK 120 Query: 119 PFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTG 178 PFNPRELVARI+AVLRR GPDE PGAPSETP++F FG+F LDLGTRTLKKN +T+ LTTG Sbjct: 121 PFNPRELVARISAVLRRIGPDEAPGAPSETPQSFTFGEFTLDLGTRTLKKNDETVPLTTG 180 Query: 179 EFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQT 238 EFSVLKVFAR+ARQPLSREKLME+ARGREYEVFDRSLDVQISRLRKLIEPDP+ PLYIQT Sbjct: 181 EFSVLKVFARHARQPLSREKLMELARGREYEVFDRSLDVQISRLRKLIEPDPSTPLYIQT 240 Query: 239 VWGLGYVFIPEGKPR 253 VWGLGYVFIPEGKPR Sbjct: 241 VWGLGYVFIPEGKPR 255 >A6SXV6.1 A6SXV6_JANMA Oxidative stress resistance two-components response regulator Length = 248 Score = 412 bits (1058), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/247 (86%), Positives = 237/247 (95%) Query: 7 NNSNTTTSANQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLV 66 ++ +T+++Q KVLVVDDD+RLRDLLRRYL+EQGFNVVTAENAQAMNKLW+RERYDLLV Sbjct: 2 KDTAHSTNSHQTKVLVVDDDLRLRDLLRRYLSEQGFNVVTAENAQAMNKLWLRERYDLLV 61 Query: 67 LDLMLPGEDGLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELV 126 LDLMLPGEDGL+ICRRLRGAGD+TPIIMLTAKGEDVDRI+GLEMGADDYL KPFNPRELV Sbjct: 62 LDLMLPGEDGLSICRRLRGAGDKTPIIMLTAKGEDVDRIVGLEMGADDYLAKPFNPRELV 121 Query: 127 ARINAVLRRKGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVF 186 ARI+AVLRR GP+E+PGAPSETP++F FG+F+LDLGTRTLKKN +T+ LTTGEFSVLKVF Sbjct: 122 ARISAVLRRVGPEEIPGAPSETPQSFTFGEFVLDLGTRTLKKNDETVPLTTGEFSVLKVF 181 Query: 187 ARNARQPLSREKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVF 246 AR+ARQPLSREKLME+ARGREYEVFDRSLDVQISRLRKLIEPDP+ PLYIQTVWGLGYVF Sbjct: 182 ARHARQPLSREKLMELARGREYEVFDRSLDVQISRLRKLIEPDPSTPLYIQTVWGLGYVF 241 Query: 247 IPEGKPR 253 IPEGKPR Sbjct: 242 IPEGKPR 248 >Q472E5.1 Q472E5_CUPPJ Two component transcriptional regulator, winged helix family Length = 240 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/235 (85%), Positives = 218/235 (92%) Query: 16 NQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGED 75 K+LVVDDD RLRDLLRRYL EQGF V+ AENA AMNKLW+RER+DLLVLDLM+PGED Sbjct: 4 TSHKILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGED 63 Query: 76 GLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRR 135 GL+ICRRLRGA DQTPIIMLTAKGEDVDRI+GLEMGADDYLPKPFNPREL+ARI+AVLRR Sbjct: 64 GLSICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRR 123 Query: 136 KGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLS 195 KGP E+PGAPSETPETF FGDF+L+L TRTL KN + I+LTTGEFSVLKVFAR+ RQPLS Sbjct: 124 KGPAEVPGAPSETPETFAFGDFVLNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLS 183 Query: 196 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEG 250 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDP+NP +IQTVWGLGYVFIP+G Sbjct: 184 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPSNPRFIQTVWGLGYVFIPDG 238 >Q0KBM3.1 Q0KBM3_CUPNH Response regulator, OmpR-family Length = 240 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/235 (85%), Positives = 218/235 (92%) Query: 16 NQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGED 75 K+LVVDDD RLRDLLRRYL EQGF V+ AENA AMNKLW+RER+DLLVLDLM+PGED Sbjct: 4 TSHKILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGED 63 Query: 76 GLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRR 135 GL+ICRRLRGA DQTPIIMLTAKGEDVDRI+GLEMGADDYLPKPFNPREL+ARI+AVLRR Sbjct: 64 GLSICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRR 123 Query: 136 KGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLS 195 KGP E+PGAPSETPETF FGDF+L+L TRTL KN + I+LTTGEFSVLKVFAR+ RQPLS Sbjct: 124 KGPAEVPGAPSETPETFAFGDFVLNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLS 183 Query: 196 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEG 250 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDP+NP +IQTVWGLGYVFIP+G Sbjct: 184 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPSNPRFIQTVWGLGYVFIPDG 238 >B3R4V0.1 B3R4V0_CUPTR Response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) Length = 240 Score = 386 bits (991), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/235 (85%), Positives = 218/235 (92%) Query: 16 NQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGED 75 K+LVVDDD RLRDLLRRYL EQGF V+ AENA AMNKLW+RER+DLLVLDLM+PGED Sbjct: 4 TSHKILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGED 63 Query: 76 GLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRR 135 GL+ICRRLRGA DQTPIIMLTAKGEDVDRI+GLEMGADDYLPKPFNPREL+ARI+AVLRR Sbjct: 64 GLSICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRR 123 Query: 136 KGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLS 195 KGP E+PGAPSETPETF FGDF+L+L TRTL KN + I+LTTGEFSVLKVFAR+ RQPLS Sbjct: 124 KGPAEVPGAPSETPETFAFGDFVLNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLS 183 Query: 196 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEG 250 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDP+NP +IQTVWGLGYVFIP+G Sbjct: 184 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPSNPRFIQTVWGLGYVFIPDG 238 >Q1LM00.1 Q1LM00_RALME Two-component transcriptional regulator, winged helix family Length = 240 Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust. Identities = 200/235 (85%), Positives = 217/235 (92%) Query: 16 NQFKVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGED 75 K+LVVDDD RLRDLLRRYL EQGF V+ AENA AMNKLW+RER+DLLVLDLM+PGED Sbjct: 4 TSHKILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGED 63 Query: 76 GLAICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRR 135 GL+ICRRLRGA DQTPIIMLTAKGEDVDRI+GLEMGADDYLPKPFNPREL+ARI+AVLRR Sbjct: 64 GLSICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRR 123 Query: 136 KGPDELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLS 195 KGP E+PGAPSETPETF FGDF+L+L TRTL KN + I+LTTGEFSVLKVFAR+ RQPLS Sbjct: 124 KGPAEVPGAPSETPETFAFGDFVLNLATRTLTKNDEEITLTTGEFSVLKVFARHPRQPLS 183 Query: 196 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEG 250 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDP NP +IQTVWGLGYVFIP+G Sbjct: 184 REKLMEMARGREYEVFDRSLDVQISRLRKLIEPDPGNPRFIQTVWGLGYVFIPDG 238 >Q8XYV8.1 Q8XYV8_RALSO Response regulator in two-component regulatory system with EnvZ, regulates ompF and ompC expression (OmpR family) Length = 240 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/232 (85%), Positives = 218/232 (93%) Query: 19 KVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGLA 78 K+LVVDDD RLRDLLRRYL EQGF V+ AENA AMNKLW+RER+DLLVLDLM+PGEDGL+ Sbjct: 7 KILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLS 66 Query: 79 ICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGP 138 ICRRLRGA DQTPIIMLTAKGEDVDRI+GLEMGADDYLPKPFNPREL+ARI+AVLRR+GP Sbjct: 67 ICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRRGP 126 Query: 139 DELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLSREK 198 E+PGAPSETPETF FGDF+L+L TRTLKKN + I+LTTGEFSVLKVFAR+ RQPLSREK Sbjct: 127 AEIPGAPSETPETFAFGDFVLNLATRTLKKNDEEITLTTGEFSVLKVFARHPRQPLSREK 186 Query: 199 LMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEG 250 LMEMARGREYEVFDRSLDVQISRLRKLIEPD +NP +IQTVWGLGYVFIP+G Sbjct: 187 LMEMARGREYEVFDRSLDVQISRLRKLIEPDASNPRFIQTVWGLGYVFIPDG 238 >B5SKC1.1 B5SKC1_RALSO Oxidative stress resistance two-component response regulator protein Length = 240 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/232 (85%), Positives = 218/232 (93%) Query: 19 KVLVVDDDIRLRDLLRRYLTEQGFNVVTAENAQAMNKLWIRERYDLLVLDLMLPGEDGLA 78 K+LVVDDD RLRDLLRRYL EQGF V+ AENA AMNKLW+RER+DLLVLDLM+PGEDGL+ Sbjct: 7 KILVVDDDPRLRDLLRRYLGEQGFTVLVAENATAMNKLWLRERFDLLVLDLMMPGEDGLS 66 Query: 79 ICRRLRGAGDQTPIIMLTAKGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGP 138 ICRRLRGA DQTPIIMLTAKGEDVDRI+GLEMGADDYLPKPFNPREL+ARI+AVLRR+GP Sbjct: 67 ICRRLRGANDQTPIIMLTAKGEDVDRIVGLEMGADDYLPKPFNPRELIARIHAVLRRRGP 126 Query: 139 DELPGAPSETPETFEFGDFILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLSREK 198 E+PGAPSETPETF FGDF+L+L TRTLKKN + I+LTTGEFSVLKVFAR+ RQPLSREK Sbjct: 127 AEIPGAPSETPETFAFGDFVLNLATRTLKKNDEEITLTTGEFSVLKVFARHPRQPLSREK 186 Query: 199 LMEMARGREYEVFDRSLDVQISRLRKLIEPDPANPLYIQTVWGLGYVFIPEG 250 LMEMARGREYEVFDRSLDVQISRLRKLIEPD +NP +IQTVWGLGYVFIP+G Sbjct: 187 LMEMARGREYEVFDRSLDVQISRLRKLIEPDASNPRFIQTVWGLGYVFIPDG 238