BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0084.p (149 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IU39.1 D8IU39_HERSS SsrA-binding protein 307 3e-82 F1VZE3.1 F1VZE3_9BURK TmRNA-binding protein SmpB 254 3e-66 A6SZN1.1 A6SZN1_JANMA SsrA-binding protein 2 249 1e-64 A4G4U1.1 A4G4U1_HERAR SsrA-binding protein 1 246 6e-64 C3X6R6.1 C3X6R6_OXAFO SsrA-binding protein 244 2e-63 C3XCZ2.1 C3XCZ2_OXAFO SsrA-binding protein 237 3e-61 Q3SI24.1 SSRP_THIDA SsrA-binding protein 236 7e-61 E6QT59.1 E6QT59_9ZZZZ SsrA-binding protein 233 9e-60 Q0KA36.1 SSRP_CUPNH SsrA-binding protein 231 3e-59 B3R297.1 SSRP_CUPTR SsrA-binding protein 230 5e-59 >D8IU39.1 D8IU39_HERSS SsrA-binding protein Length = 149 Score = 307 bits (787), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 148/149 (99%), Positives = 149/149 (100%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS Sbjct: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHY+KGRIKCDIGLAK Sbjct: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYNKGRIKCDIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKRETEKQRDSQREIQTAMKQHRR Sbjct: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 >F1VZE3.1 F1VZE3_9BURK TmRNA-binding protein SmpB Length = 149 Score = 254 bits (650), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 120/149 (80%), Positives = 132/149 (88%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I+DN+KAF DYF+EERFEAGL LQGWE KSIRAGRVQLKEAYVIVRN EV+LFG HIS Sbjct: 1 MTIVDNRKAFHDYFVEERFEAGLSLQGWEAKSIRAGRVQLKEAYVIVRNNEVFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 ALTSTSTHVHPE TRTRKLLL+AAEI K+I KVERSGYTLVP+NLHY GRIK ++GLAK Sbjct: 61 ALTSTSTHVHPEATRTRKLLLHAAEIKKMIIKVERSGYTLVPINLHYVGGRIKLEVGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR TE+ RD QRE+ AMK HRR Sbjct: 121 GKKQHDKRATERDRDGQREVAQAMKTHRR 149 >A6SZN1.1 A6SZN1_JANMA SsrA-binding protein 2 Length = 149 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/149 (77%), Positives = 131/149 (87%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI+DN+KAF DYFIEERFEAG+VLQGWE KSIRAGRVQLKEAYVIVRN E++LFG HIS Sbjct: 1 MSIVDNRKAFHDYFIEERFEAGVVLQGWEAKSIRAGRVQLKEAYVIVRNDEIFLFGSHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+ P+ RTRKLLL + EI KL KVERSGYTLVPLNLHY +G IKC+IGLAK Sbjct: 61 PLATASTHITPDPVRTRKLLLKSEEIKKLSAKVERSGYTLVPLNLHYQRGYIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR+TEKQRD+QREIQ+ MKQ+RR Sbjct: 121 GKKQHDKRDTEKQRDTQREIQSVMKQNRR 149 >A4G4U1.1 A4G4U1_HERAR SsrA-binding protein 1 Length = 149 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 117/149 (78%), Positives = 130/149 (87%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI+DN+KAF DYFIEERFEAG+VLQGWEVK+IRAGR QLKEAYVIVRN E++LFG HIS Sbjct: 1 MSIVDNRKAFHDYFIEERFEAGIVLQGWEVKAIRAGRSQLKEAYVIVRNDEIFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L S STHV P+ RTRKLLL A EI KL KVER+GYTLVPLNLHY KG IKC+IGLAK Sbjct: 61 PLASASTHVTPDPVRTRKLLLKADEIKKLSIKVERAGYTLVPLNLHYQKGYIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQHDKR++EKQRD+QREIQ MKQ+RR Sbjct: 121 GKKQHDKRDSEKQRDTQREIQAVMKQNRR 149 >C3X6R6.1 C3X6R6_OXAFO SsrA-binding protein Length = 149 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 114/149 (76%), Positives = 133/149 (89%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAF DYFIEERFEAG+ L+GWEVKSIRAGRVQLKEAYVIV++GE++LFG HIS Sbjct: 1 MTIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKSGEIFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+ P+ R RKLL++A+EI KLIGKVER+GYTLVPLNLH+SKGRIKC+IGLAK Sbjct: 61 PLPTASTHIRPDPVRDRKLLMHASEIGKLIGKVERAGYTLVPLNLHFSKGRIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQ+DKRETEK+RD QRE Q MKQ+RR Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQNRR 149 >C3XCZ2.1 C3XCZ2_OXAFO SsrA-binding protein Length = 149 Score = 237 bits (605), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 112/149 (75%), Positives = 130/149 (87%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAF DYFIEERFEAG+ L+GWEVKSIRAGRVQLKEAYVIV+ E++LFG HIS Sbjct: 1 MTIADNKKAFHDYFIEERFEAGMALEGWEVKSIRAGRVQLKEAYVIVKGVEIFLFGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+ P+ R RKLL++A EISKLIGKVER+GYTLVPLN+H+SKGRIKC+IGLAK Sbjct: 61 PLPTASTHIKPDPVRDRKLLMHADEISKLIGKVERAGYTLVPLNMHFSKGRIKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKKQ+DKRETEK+RD QRE Q MKQ+ R Sbjct: 121 GKKQYDKRETEKERDWQREQQKIMKQNIR 149 >Q3SI24.1 SSRP_THIDA SsrA-binding protein Length = 149 Score = 236 bits (603), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 110/141 (78%), Positives = 126/141 (89%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI DNKKAF DYFIEERFEAGLVL+GWEVK+IRAGRVQLKEAYV+V+NG VYL GCHIS Sbjct: 1 MSIADNKKAFHDYFIEERFEAGLVLEGWEVKAIRAGRVQLKEAYVVVKNGAVYLIGCHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STH+HP+ TR+RKLLL+AAEI+KLIGK ER+G+TLVPL++HYSKGRIK +IGLAK Sbjct: 61 PLPTASTHIHPDPTRSRKLLLHAAEINKLIGKTERAGFTLVPLDMHYSKGRIKLEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQ 141 GKKQHDKR EK R+ QRE Q Sbjct: 121 GKKQHDKRAAEKDREWQREKQ 141 >E6QT59.1 E6QT59_9ZZZZ SsrA-binding protein Length = 151 Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust. Identities = 106/149 (71%), Positives = 127/149 (85%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 MSI+ NKKAF DYFIEE+FEAGL+L GWEVK+IRAGR QLKEAYV++R GE++L G HIS Sbjct: 1 MSIVQNKKAFHDYFIEEKFEAGLMLNGWEVKAIRAGRAQLKEAYVVIRKGEIFLIGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L + STHVHP+ TRTRKLLL+A EISKLIGKVER+GYTLVP+NLH+++ RIK DI LAK Sbjct: 61 PLLTASTHVHPDATRTRKLLLHAEEISKLIGKVERAGYTLVPINLHFTRSRIKLDIALAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMKQHRR 149 GKK+HDKR+ K R+S REIQ A++ H R Sbjct: 121 GKKEHDKRDATKTRESDREIQRALRSHNR 149 >Q0KA36.1 SSRP_CUPNH SsrA-binding protein Length = 150 Score = 231 bits (589), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 108/145 (74%), Positives = 125/145 (86%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAFFDYFIEER+EAG+VL+GWEVK+IRAGRVQ+KE YV+VR+ E++L G HIS Sbjct: 1 MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L S STHV+P+ RTRKLLL A EI KLIGKVE+ GYTLVPLNLHY++GR+KC+IGLAK Sbjct: 61 PLQSASTHVNPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMK 145 GKKQ DKRETEKQRD QRE MK Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145 >B3R297.1 SSRP_CUPTR SsrA-binding protein Length = 149 Score = 230 bits (586), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/145 (74%), Positives = 124/145 (85%) Query: 1 MSIIDNKKAFFDYFIEERFEAGLVLQGWEVKSIRAGRVQLKEAYVIVRNGEVYLFGCHIS 60 M+I DNKKAFFDYFIEER+EAG+VL+GWEVK+IRAGRVQ+KE YV+VR+ E++L G HIS Sbjct: 1 MTIADNKKAFFDYFIEERYEAGIVLEGWEVKAIRAGRVQIKEGYVVVRDAEMFLIGAHIS 60 Query: 61 ALTSTSTHVHPETTRTRKLLLNAAEISKLIGKVERSGYTLVPLNLHYSKGRIKCDIGLAK 120 L S STHV P+ RTRKLLL A EI KLIGKVE+ GYTLVPLNLHY++GR+KC+IGLAK Sbjct: 61 PLQSASTHVKPDPVRTRKLLLKADEIKKLIGKVEQRGYTLVPLNLHYTRGRVKCEIGLAK 120 Query: 121 GKKQHDKRETEKQRDSQREIQTAMK 145 GKKQ DKRETEKQRD QRE MK Sbjct: 121 GKKQFDKRETEKQRDWQREKARIMK 145