BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0027.0063.p (138 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IU60.1 D8IU60_HERSS Plasmid stabilization protein 278 2e-73 A1VWZ5.1 A1VWZ5_POLNA PilT protein domain protein 197 4e-49 B7JBN6.1 B7JBN6_ACIF2 Plasmid stability protein, putative 193 9e-48 B5ES16.1 B5ES16_ACIF5 PilT protein domain protein 193 9e-48 E7PUB5.1 E7PUB5_PSESG PilT domain-containing protein 192 1e-47 E1VKV0.1 E1VKV0_9GAMM Predicted nucleic acid-binding protein, co... 192 1e-47 B0U6H0.1 B0U6H0_XYLFM Plasmid stabilization protein 191 4e-47 Q3RC13.1 Q3RC13_XYLFA PilT protein, N-terminal 191 4e-47 Q3R7L3.1 Q3R7L3_XYLFA PilT protein, N-terminal 191 4e-47 Q9PD15.1 Q9PD15_XYLFA Plasmid stabilization protein 191 4e-47 >D8IU60.1 D8IU60_HERSS Plasmid stabilization protein Length = 138 Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 137/138 (99%), Positives = 137/138 (99%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA Sbjct: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR Sbjct: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 Query: 121 DVAPYLAAELTVINPWQA 138 DV PYLAAELTVINPWQA Sbjct: 121 DVTPYLAAELTVINPWQA 138 >A1VWZ5.1 A1VWZ5_POLNA PilT protein domain protein Length = 138 Score = 197 bits (501), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 96/138 (69%), Positives = 115/138 (83%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP P AV+AW N QA TLYL+S+T+AE+ FGIA L AG+R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPHPAVRAWLNAQAAPTLYLSSVTLAELLFGIAALPAGKRRDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GLL +F+DR+LPFD DAAR +AELA MAR GRGFPTPDGYIAAIAAS GF+VASR Sbjct: 61 KALDGLLGLFRDRVLPFDTDAARRYAELAVMARTGGRGFPTPDGYIAAIAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQA 138 D AP+ AA + +INPW+A Sbjct: 121 DTAPFQAAGVPIINPWEA 138 >B7JBN6.1 B7JBN6_ACIF2 Plasmid stability protein, putative Length = 139 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/137 (67%), Positives = 113/137 (82%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+AW N+QA +TLYL+S+T+AE+ FGI L AG+ +++L Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRAWLNEQAAETLYLSSVTLAELLFGIRALPAGKCKNMLD 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R LL +FKDR+LPFD DAAR +A+LA A+ GRGFPTPDGYIAA+AAS GF+VASR Sbjct: 61 RALTELLELFKDRVLPFDTDAARHYADLAVTAKNGGRGFPTPDGYIAAVAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D +PY AA +TVINPW+ Sbjct: 121 DTSPYEAAGVTVINPWK 137 >B5ES16.1 B5ES16_ACIF5 PilT protein domain protein Length = 139 Score = 193 bits (490), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 92/137 (67%), Positives = 113/137 (82%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+AW N+QA +TLYL+S+T+AE+ FGI L AG+ +++L Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRAWLNEQAAETLYLSSVTLAELLFGIRALPAGKCKNMLD 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R LL +FKDR+LPFD DAAR +A+LA A+ GRGFPTPDGYIAA+AAS GF+VASR Sbjct: 61 RALTELLELFKDRVLPFDTDAARHYADLAVTAKNGGRGFPTPDGYIAAVAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D +PY AA +TVINPW+ Sbjct: 121 DTSPYEAAGVTVINPWK 137 >E7PUB5.1 E7PUB5_PSESG PilT domain-containing protein Length = 138 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/137 (66%), Positives = 114/137 (83%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP AV+AW NDQA +TLYL+S+T+AE+ FGI L AG+R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPESHLAVRAWLNDQAAETLYLSSVTLAELLFGIGALPAGKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GL+ +F+DR+LPFD+DAAR +A+LA A+ GRGFPTPDGYIAAIAAS GF+VASR Sbjct: 61 QALDGLMGLFRDRVLPFDIDAARRYADLAVTAKTCGRGFPTPDGYIAAIAASRGFIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D APY A ++VINPW+ Sbjct: 121 DTAPYEAVGVSVINPWE 137 >E1VKV0.1 E1VKV0_9GAMM Predicted nucleic acid-binding protein, contains PIN domain Length = 142 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 90/136 (66%), Positives = 113/136 (83%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP P AV+AW NDQ +TLYL+S+T+AE+ FGIA L AG+R+++LA Sbjct: 1 MIVLDTNVVSEAMKPEPHKAVRAWLNDQVAETLYLSSVTLAELLFGIAALPAGKRKNMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 + +GL +FKDR+LPFD DAAR +AELA +A+ +GRGFPTPDGYIAAIAAS F+VA+R Sbjct: 61 QSLDGLTGLFKDRVLPFDTDAARHYAELAVIAKTSGRGFPTPDGYIAAIAASRDFIVATR 120 Query: 121 DVAPYLAAELTVINPW 136 D P+ AA ++VINPW Sbjct: 121 DTTPFEAAGVSVINPW 136 >B0U6H0.1 B0U6H0_XYLFM Plasmid stabilization protein Length = 142 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 110/137 (80%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+ W N+Q TLYL+S+T++E+ FGIA L +R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R +GLL +F +R+LPFD DAAR +AELA AR GRGFPTPDGYIAAIAAS G++VASR Sbjct: 61 RTLDGLLDLFNERVLPFDTDAARHYAELAVKARNNGRGFPTPDGYIAAIAASRGYIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D + Y ++ + VINPWQ Sbjct: 121 DTSAYESSGVQVINPWQ 137 >Q3RC13.1 Q3RC13_XYLFA PilT protein, N-terminal Length = 142 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 110/137 (80%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+ W N+Q TLYL+S+T++E+ FGIA L +R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R +GLL +F +R+LPFD DAAR +AELA AR GRGFPTPDGYIAAIAAS G++VASR Sbjct: 61 RTLDGLLDLFNERVLPFDTDAARHYAELAVKARNNGRGFPTPDGYIAAIAASRGYIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D + Y ++ + VINPWQ Sbjct: 121 DTSAYESSGVQVINPWQ 137 >Q3R7L3.1 Q3R7L3_XYLFA PilT protein, N-terminal Length = 142 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 89/137 (64%), Positives = 110/137 (80%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+ W N+Q TLYL+S+T++E+ FGIA L +R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R +GLL +F +R+LPFD DAAR +AELA AR GRGFPTPDGYIAAIAAS G++VASR Sbjct: 61 RTLDGLLDLFNERVLPFDTDAARHYAELAVKARNNGRGFPTPDGYIAAIAASRGYIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D + Y ++ + VINPWQ Sbjct: 121 DTSAYESSGVQVINPWQ 137 >Q9PD15.1 Q9PD15_XYLFA Plasmid stabilization protein Length = 142 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 88/137 (64%), Positives = 111/137 (81%) Query: 1 MIVLDTNVVSEAMKPAPDAAVQAWFNDQAPDTLYLTSITVAEIGFGIACLSAGRRQDLLA 60 MIVLDTNVVSEAMKP PDAAV+ W N+Q TLYL+S+T++E+ FGIA L +R+D+LA Sbjct: 1 MIVLDTNVVSEAMKPEPDAAVRTWLNEQMSVTLYLSSVTLSELLFGIAVLPTSKRKDMLA 60 Query: 61 RRFEGLLRMFKDRILPFDMDAARSHAELAAMARRAGRGFPTPDGYIAAIAASCGFLVASR 120 R +GLL +F +R+LPF+ DAAR +AELA AR +GRGFPTPDGYIAAIAAS G++VASR Sbjct: 61 RTLDGLLDLFNERVLPFNTDAARHYAELAVKARNSGRGFPTPDGYIAAIAASRGYIVASR 120 Query: 121 DVAPYLAAELTVINPWQ 137 D + Y ++ + VINPWQ Sbjct: 121 DTSAYESSGVQVINPWQ 137