BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0026.0009.p (718 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IRX4.1 D8IRX4_HERSS CheA-like histidine kinase protein EC=2.7.3.- 1337 0.0 A4G8M3.1 A4G8M3_HERAR Putative chemotaxis protein histidine kinase 407 e-111 A6T295.1 A6T295_JANMA Two-component hybrid sensor and regulator 400 e-109 F1VXJ1.1 F1VXJ1_9BURK Putative composite two component regulator... 393 e-107 C7RK06.1 C7RK06_ACCPU CheA signal transduction histidine kinase 372 e-100 Q0KDN3.1 Q0KDN3_CUPNH Type IV pilus protein histidine kinase/res... 365 1e-98 B5SH44.1 B5SH44_RALSO Composite two component regulatory protein... 365 1e-98 A3RQI2.1 A3RQI2_RALSO Transcription regulator composite two comp... 365 2e-98 D8N742.1 D8N742_RALSO Putative composite protein : Response regu... 364 3e-98 D8NXL0.1 D8NXL0_RALSO Putative composite protein : Response regu... 363 7e-98 >D8IRX4.1 D8IRX4_HERSS CheA-like histidine kinase protein EC=2.7.3.- Length = 744 Score = 1337 bits (3459), Expect = 0.0, Method: Compositional matrix adjust. Identities = 715/722 (99%), Positives = 715/722 (99%), Gaps = 4/722 (0%) Query: 1 LQETLQPLLKILRQQGSSWRARVDSGLVCPAPPLYLRTLTAVRDCTRSAGAADLEACASA 60 LQETLQPLLKILRQQGSSWRARVDSGLVCPAPPLYLRTLTAVRDCTRSAGAADLEACASA Sbjct: 23 LQETLQPLLKILRQQGSSWRARVDSGLVCPAPPLYLRTLTAVRDCTRSAGAADLEACASA 82 Query: 61 ILRVLECAQPPGQGLDIPALDIIERAVAALAQRGSNRVALEELAALSQPPRMRSSPAARD 120 ILRVLECAQPPGQGLDIPALDIIERAVAALAQRGSNRVALEELAALSQPPRMRSSPAARD Sbjct: 83 ILRVLECAQPPGQGLDIPALDIIERAVAALAQRGSNRVALEELAALSQPPRMRSSPAARD 142 Query: 121 TAPAPWLAPREQQWEGLQDELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA 180 TAPAPWLAPREQQWEGLQDELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA Sbjct: 143 TAPAPWLAPREQQWEGLQDELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA 202 Query: 181 RPLHTLKGSARMVGARRLSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLA 240 RPLHTLKGSARMVGARRLSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLA Sbjct: 203 RPLHTLKGSARMVGARRLSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLA 262 Query: 241 LDHFAALTQAALLLSADGGARAPVLPAPLIRIRTTVLDKLLNQVGEVSIARSRLDNEVGS 300 LDHFAALTQAALLLSADGGARAPVLPAPLIRIRTTVLDKLLNQVGEVSIARSRLDNEVGS Sbjct: 263 LDHFAALTQAALLLSADGGARAPVLPAPLIRIRTTVLDKLLNQVGEVSIARSRLDNEVGS 322 Query: 301 LQSESKALGEQLMRLSGELRQ----SGAQAQDGGDAVAAMQALAHSLAARLEQASLHQRR 356 LQSESKALGEQLMRLSGELRQ SG QAQDGGDA AAMQALAHSLAARLEQASLHQRR Sbjct: 323 LQSESKALGEQLMRLSGELRQWLRQSGTQAQDGGDAAAAMQALAHSLAARLEQASLHQRR 382 Query: 357 LQEGVSSTREGLRQQAAHTRELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDL 416 LQEGVSSTREGLRQQAAHTRELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDL Sbjct: 383 LQEGVSSTREGLRQQAAHTRELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDL 442 Query: 417 SNCRLQIDRAILERLMGPLEHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAV 476 SNCRLQIDRAILERLMGPLEHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAV Sbjct: 443 SNCRLQIDRAILERLMGPLEHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAV 502 Query: 477 IRVSDDGRGLDLEAIRQKALELGAAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGM 536 IRVSDDGRGLDLEAIRQKALELGAAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGM Sbjct: 503 IRVSDDGRGLDLEAIRQKALELGAAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGM 562 Query: 537 DVVRSEVAALGGWMRVHSQPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIV 596 DVVRSEVAALGGWMRVHSQPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIV Sbjct: 563 DVVRSEVAALGGWMRVHSQPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIV 622 Query: 597 QLRGPQARQALAERSLEHQGSRLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAV 656 QLRGPQARQALAERSLEHQGSRL LHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAV Sbjct: 623 QLRGPQARQALAERSLEHQGSRLALHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAV 682 Query: 657 LADHVSGNREVVVKPVGPQLATLAGVVGATVLGDGQIVLIINPLLLAGAGRTDGMAVAPG 716 LADHVSGNREVVVKPVGPQLATLAGVVGATVLGDGQIVLIINPLLLAGAGRTDGMAVAPG Sbjct: 683 LADHVSGNREVVVKPVGPQLATLAGVVGATVLGDGQIVLIINPLLLAGAGRTDGMAVAPG 742 Query: 717 VQ 718 VQ Sbjct: 743 VQ 744 >A4G8M3.1 A4G8M3_HERAR Putative chemotaxis protein histidine kinase Length = 1969 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 249/629 (39%), Positives = 354/629 (56%), Gaps = 70/629 (11%) Query: 137 LQDELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELA-GLARPLHTLKGSARMVGA 195 ++DE+D LLPVF+EE +++ +G+ L A +Q + DA L + R LHT+KGSARM GA Sbjct: 1177 IKDEIDIDLLPVFIEEGSDMLPQMGQALRAWQQNLGDAALPQSVLRILHTVKGSARMAGA 1236 Query: 196 RRLSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHFAALT------- 248 L +H+MET IE + + AA+E LL HD L F L Sbjct: 1237 MLLGQHMHEMETR-------IENITHAGYPSAAAVEDLLARHDHGLQLFEQLQNPDAIRP 1289 Query: 249 QAALLLSAD-------GGARAPVL-----------------------------PAPLIRI 272 QA+ D A PV+ P PL+R+ Sbjct: 1290 QASAAAVTDEENTPAPAAAELPVIQSLMPVTDNRTTPIAAEAAAASRTPATATPVPLVRV 1349 Query: 273 RTTVLDKLLNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD---- 328 R +LD+L+NQ GEVSI+RS+L+ EVG+L++ L E ++RL +LR+ QA+ Sbjct: 1350 RADILDRLVNQAGEVSISRSKLETEVGTLRASMGELSENVIRLREQLREIEMQAESQITS 1409 Query: 329 -------------GGDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHT 375 D +Q L +A + Q+ L + S L QA T Sbjct: 1410 HMGVSSDREFDPLEFDRFTRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTNQARLT 1469 Query: 376 RELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPL 435 R+LQQ+LM RMV+F S+ R+ + RQ A E K + LD+ +++DR++LE++ GP Sbjct: 1470 RDLQQDLMRVRMVQFASISERLYRVTRQAAKEMDKRVNLDIRGSAVEVDRSVLEKMAGPF 1529 Query: 436 EHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKA 495 EHLLRNA VHGIES E+R A GK G L ++ EGNE VI SDDG+GL+L +IR KA Sbjct: 1530 EHLLRNAIVHGIESREKRRAAGKSETGELRIEIRQEGNEVVIHFSDDGQGLNLNSIRSKA 1589 Query: 496 LELGAAGLAEA-SQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHS 554 L+ G +A S A + DLIF PG ST+ +++ LAGRGIGMDVVRSE A+LGG + + S Sbjct: 1590 LQNGLVKAEDALSDAEVTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRVAIAS 1649 Query: 555 QPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEH 614 +PG+G FT++LPL+LAV V +L G + +AIPS+LV+ + QL+ A E ++ Sbjct: 1650 EPGKGAYFTIHLPLTLAVTQVVILSTGGKTYAIPSVLVEQVQQLKNGPLATAYNEGAVMW 1709 Query: 615 QGSRLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGP 674 Q R+P+H LL + + A + ++++K +A+ D + GNREVVVK +GP Sbjct: 1710 QSQRVPMHYLSALLGDT-DAAPVTQQYSPLMILKSGSDRVALHVDEILGNREVVVKNIGP 1768 Query: 675 QLATLAGVVGATVLGDGQIVLIINPLLLA 703 QL+ + G+ GATVLG G+IVLI+NP+ LA Sbjct: 1769 QLSRMIGIAGATVLGSGEIVLILNPVPLA 1797 >A6T295.1 A6T295_JANMA Two-component hybrid sensor and regulator Length = 1901 Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust. Identities = 263/676 (38%), Positives = 373/676 (55%), Gaps = 83/676 (12%) Query: 102 ELAALSQPPRMRSSPAARDTA------------PAPWLAPREQQWEG--------LQDEL 141 E AAL++ P S+ A D++ AP+ P Q + ++DE+ Sbjct: 1065 ESAALAEQPVEESTAAVPDSSQLPLVNPDSLASAAPFAEPVYPQLDEELSDPSLLIRDEI 1124 Query: 142 DQALLPVFLEEAQELMSSIGEGLEALRQGVADAELA-GLARPLHTLKGSARMVGARRLSH 200 D LLPVF+EE ++++ +G+ L A +Q + + L L+R LHT+KGSARM GA L Sbjct: 1125 DTDLLPVFIEEGRDMLPQMGQALRAWQQDLGNTLLPQSLSRLLHTVKGSARMAGAMSLGQ 1184 Query: 201 CLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHF---------------- 244 +H+MET IE + + AALE LL +D L F Sbjct: 1185 HMHEMETR-------IENITHAGHPSAAALEDLLARYDQGLHLFEQLQNTNKPAVSASET 1237 Query: 245 --------AALTQAALLLSADGGARAPVLP----------APLIRIRTTVLDKLLNQVGE 286 A L Q + AP++P APL+R+R +LD+L+NQ GE Sbjct: 1238 KPESAAAKAELPQIHSAMPVTPNKLAPIVPQAGALAATAAAPLVRVRADILDRLVNQAGE 1297 Query: 287 VSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD-----------------G 329 VSI+RS+L+ EVG+L+ L E ++RL +LR+ QA+ Sbjct: 1298 VSISRSKLETEVGTLRQSMGELSENVVRLREQLREIEMQAESQITSRMGISADREFDPLE 1357 Query: 330 GDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHTRELQQELMYARMVK 389 D +Q L +A + Q+ L + S L QA TR+LQQ+LM RMV+ Sbjct: 1358 FDRFTRLQELTRMMAESVNDVGSVQQNLSRTIDSASTDLTTQARLTRDLQQDLMRVRMVQ 1417 Query: 390 FNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPLEHLLRNAAVHGIES 449 F S+ R+ + RQ + ET K + LD+ ++IDR +LE++ GP EHLLRNA VHGIES Sbjct: 1418 FASISERLFRVTRQASKETDKRVNLDIRGSAVEIDRGVLEKMAGPFEHLLRNAIVHGIES 1477 Query: 450 AEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKALELGAAGLAEA-SQ 508 E+R A GK G L ++ EGNE VI SDDG+GL+L+ IR KAL G A S Sbjct: 1478 REKRQAAGKNETGELRIEIRQEGNEVVIHFSDDGQGLNLDNIRNKALSSGLLTEDMALSD 1537 Query: 509 ARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHSQPGQGVQFTLYLPL 568 + DLIF PG ST+ +++ LAGRGIGMDVVRSE A+LGG + + S+ G+G FT++LPL Sbjct: 1538 SETTDLIFHPGFSTAEEITELAGRGIGMDVVRSEAASLGGRVAIASEAGKGANFTIHLPL 1597 Query: 569 SLAVQHVCLLRHGQQHFAIPSMLVDSIVQLR-GPQARQALAERSLEHQGSRLPLHPWHCL 627 +LAV V LL G + +AIPS+LV+ + QL+ GP A A E ++ Q R+P+H L Sbjct: 1598 TLAVTQVVLLSTGGKTYAIPSVLVEQVQQLKTGPLA-AAYNEGAVMWQSQRVPMHYLSSL 1656 Query: 628 LDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGPQLATLAGVVGATV 687 L + + A + +L++K + +A+ D + GNREVVVK +GPQL+ + G+ GATV Sbjct: 1657 LGDL-QVAPVTQQYSPLLILKSGNERVALHVDEILGNREVVVKNIGPQLSRMIGIAGATV 1715 Query: 688 LGDGQIVLIINPLLLA 703 LG G+IVLI+NP+ LA Sbjct: 1716 LGSGEIVLILNPVPLA 1731 >F1VXJ1.1 F1VXJ1_9BURK Putative composite two component regulatory (Sensor histidine kinase and response regulator hybrid) transcription regulator protein Length = 1331 Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust. Identities = 246/600 (41%), Positives = 343/600 (57%), Gaps = 43/600 (7%) Query: 139 DELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELA-GLARPLHTLKGSARMVGARR 197 DELD LLP+FLEE ++++ +G L + + L + R LHT+KGSARM GA + Sbjct: 583 DELDADLLPIFLEEGRDMLPQMGTALRGWQNELTSTALPQSVLRLLHTIKGSARMAGAMQ 642 Query: 198 LSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHFAALTQAALLLS-- 255 L LH E+ + + + H AAL+ LL HD +L F L A + Sbjct: 643 LGQYLHDTESQIETLLHAGQPQH-------AALDALLARHDHSLYLFDLLHNPAAPVDEV 695 Query: 256 ------ADGGARAPVLPAP--------LIRIRTTVLDKLLNQVGEVSIARSRLDNEVGSL 301 + AP LP+P ++R+R +LD+L+NQ GEVSI+RSRL+ EVG+L Sbjct: 696 PSSAVVSPPETVAPALPSPVPGTGSATMVRVRADILDRLVNQAGEVSISRSRLETEVGTL 755 Query: 302 QSESKALGEQLMRLSGELRQSGAQAQ-----------DG------GDAVAAMQALAHSLA 344 + L + + RL +LR+ QA DG D +Q L +A Sbjct: 756 RQSLSELTDNVARLRDQLREIELQADSQITSRRALSPDGEFDPLEFDRYTRLQELTRMMA 815 Query: 345 ARLEQASLHQRRLQEGVSSTREGLRQQAAHTRELQQELMYARMVKFNSMEVRMQHLVRQV 404 + + Q+ L V + QA TRELQQ+LM RMV F+S+ R+ + RQV Sbjct: 816 ESVSDVASVQQNLTRTVDEASTEIVTQARLTRELQQDLMRVRMVPFSSIAERLYRVTRQV 875 Query: 405 AAETGKPLALDLSNCRLQIDRAILERLMGPLEHLLRNAAVHGIESAEQRLAEGKPAVGRL 464 + E K + LD+ ++IDR +LE+++GP EHLLRNA VHGIE EQR A GK G L Sbjct: 876 SKEVDKRVNLDIRGGSVEIDRGVLEKMVGPFEHLLRNAIVHGIEHREQRRAAGKNETGEL 935 Query: 465 TVQATHEGNEAVIRVSDDGRGLDLEAIRQKALELG-AAGLAEASQARLADLIFQPGLSTS 523 V+ EGNE V++ SDDG GLDL+ IR KA G A E ++A L DLIF PG ST Sbjct: 936 RVEIRQEGNEVVLQFSDDGCGLDLQRIRSKAQATGLLAHGREVAEAELTDLIFNPGFSTV 995 Query: 524 PQVSALAGRGIGMDVVRSEVAALGGWMRVHSQPGQGVQFTLYLPLSLAVQHVCLLRHGQQ 583 +V+ LAGRGIGMDVVRSE +LGG + + +Q GQG QFT+ LPL+LAV V +LR G + Sbjct: 996 AEVTELAGRGIGMDVVRSEAGSLGGRVAIATQAGQGAQFTIPLPLTLAVTQVVVLRTGDK 1055 Query: 584 HFAIPSMLVDSIVQLRGPQARQALAERSLEHQGSRLPLHPWHCLLDEAPEPAGEGSDSAY 643 +A+PS+LV+ + QL+ A + +++ QG R+PL LL + + Sbjct: 1056 IYAVPSVLVEQVQQLKATALASAYNDGAIQWQGQRVPLFYLPTLLGDR-QTIAVTQQYTP 1114 Query: 644 VLLIKRDDGLMAVLADHVSGNREVVVKPVGPQLATLAGVVGATVLGDGQIVLIINPLLLA 703 V++++ + +A+ D + GNREVVVK +GPQLA + G+ GATVLG G+IVLI+NP+ LA Sbjct: 1115 VIILRSGNDRVAIHVDDIQGNREVVVKNIGPQLARMVGIAGATVLGSGEIVLILNPVPLA 1174 >C7RK06.1 C7RK06_ACCPU CheA signal transduction histidine kinase Length = 1797 Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust. Identities = 249/631 (39%), Positives = 347/631 (54%), Gaps = 55/631 (8%) Query: 137 LQDELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAG-LARPLHTLKGSARMVGA 195 LQDELD+ LLP+FLEEA EL I L A R AD+E+ LAR HTLKGSARM GA Sbjct: 1029 LQDELDEQLLPLFLEEALELNQGIATQLRAWRSNPADSEVVRRLARLFHTLKGSARMAGA 1088 Query: 196 RRLSHCLHQMETALRGVQTG-------IEGVHDRSSATLAALETL-LGLHDLAL----DH 243 L H +ET + Q I+ V + + A+E+L G AL D Sbjct: 1089 MNLGELTHAIETRMEEAQRAGPAAPELIDDVDNVFDVIVQAVESLQRGESSDALVEVPDD 1148 Query: 244 FAALTQAALLLSADGGARAPVLPAP------------------LIRIRTTVLDKLLNQVG 285 A + SA G A A AP ++R+R ++D+L+N+ G Sbjct: 1149 VVAEADVESVASAGGLAGAVEQAAPASQREAQEGETDAATQRAILRVRADLIDRLVNEAG 1208 Query: 286 EVSIARSRLDNEVGSLQSESKALGEQLMRLSGELR----------QSGAQAQDGG----- 330 E+SIARSR++ E+ S++ L E ++RL +LR QS D Sbjct: 1209 ELSIARSRIEGEMRSIKGSLLDLTENVIRLRRQLRDIELHAELQMQSRTALTDESHTDFD 1268 Query: 331 ----DAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHTRELQQELMYAR 386 D Q L +A + + Q+ L + + + Q+ RELQQELM R Sbjct: 1269 PLEFDRFTRFQELTRMMAESVNDVATAQQSLLKNLDDANAAILAQSRLNRELQQELMSVR 1328 Query: 387 MVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPLEHLLRNAAVHG 446 MV F S+ R+ +VRQ E GK L++S L++DR +L++++ PLEH+LRNA HG Sbjct: 1329 MVPFASIADRLYRIVRQATKEIGKRANLEISGAELELDRTVLDKMLAPLEHILRNAVAHG 1388 Query: 447 IESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKALELGAAGLAEA 506 +E A+ RLA+GKP +G L++ EGNE ++ SDDG GLDLE +R++ L G EA Sbjct: 1389 LERADVRLAKGKPEIGELSLTLAQEGNEVILCFSDDGAGLDLERLRERGLAAGLLTREEA 1448 Query: 507 SQ-ARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHSQPGQGVQFTLY 565 + R+ DLIF PG+ST+ +VS L+GRGIGMDV++SEVA+LGG + V S GQG F LY Sbjct: 1449 ADPTRVVDLIFAPGISTASEVSRLSGRGIGMDVLKSEVASLGGRIEVVSNIGQGTTFRLY 1508 Query: 566 LPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEHQGSRLPLHPW- 624 LPL+LAV L+R G++ +AIPS +++ ++ L+ + + G+ P H Sbjct: 1509 LPLTLAVTKALLVRSGKREYAIPSAMIEQVLDLKEKGLARIRDAKVASWSGNPYPFHYLP 1568 Query: 625 HCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGPQLATLAGVVG 684 H L D P E +VLL++ G + + D + GN+E+VVK VG QLA + GV G Sbjct: 1569 HLLGDSQALP--EKHQQYWVLLLRSGTGRIGLQVDGLLGNQEIVVKNVGQQLARVIGVDG 1626 Query: 685 ATVLGDGQIVLIINPLLLAGAGRTDGMAVAP 715 ATVLG+GQ+VLI+NP+ LA R G VAP Sbjct: 1627 ATVLGNGQVVLILNPVALASRTRG-GAPVAP 1656 >Q0KDN3.1 Q0KDN3_CUPNH Type IV pilus protein histidine kinase/response regulator hybrid PilL EC=2.7.3.- Length = 1941 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 245/626 (39%), Positives = 341/626 (54%), Gaps = 65/626 (10%) Query: 142 DQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA-RPLHTLKGSARMVGARRLSH 200 D AL+ +FLEEAQ + +G+ L D+ GL R LHTLKGSARM GA L Sbjct: 1132 DPALVQIFLEEAQGTLPELGKLLRGWEAAPEDSRHGGLVLRALHTLKGSARMAGAMALGQ 1191 Query: 201 CLHQMETALRGVQTG-------------IEGVHDRSSATLAALET--LLGLHDLALDH-- 243 H+MET L G + +DR A + AL T LL D + + Sbjct: 1192 AAHEMETLLDASLRGQGQQAVGPKLFERLYAWYDRILAHVEALPTGRLLPADDPDVVNGL 1251 Query: 244 ---------FAALTQAALLLSADGGARAPVLPAP------------------LIRIRTTV 276 A L QA ++ A A P +P P L+R++ Sbjct: 1252 AEVPEQAQADAPLPQADTVVEAVPAASLPAMPGPADVMVAMPPAVPAEPQRALVRVQARA 1311 Query: 277 LDKLLNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD-------- 328 LD L+N+ GEV R+RLD+E+ ++++ L + + RL G+LR+ QA+ Sbjct: 1312 LDTLINEAGEVGATRARLDSELEAMRAYLGELNDNVARLRGQLREIEIQAESQMASRIAD 1371 Query: 329 ----------GGDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHTREL 378 D Q L +A + + ++ LQ G L QA TR L Sbjct: 1372 AQHKQEFDPLEFDRFTRFQELTRMMAESVNDVATVEQNLQRGFDRAAGDLAAQARLTRGL 1431 Query: 379 QQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPLEHL 438 Q+ LM ARMV+F+++ R+ + RQ AAETGK + L + ++IDR++L+R+ GP+EHL Sbjct: 1432 QRGLMQARMVQFDALAERLYRVARQAAAETGKEVRLLIKGGTVEIDRSVLDRMAGPIEHL 1491 Query: 439 LRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKALEL 498 +RNA VHGIE+A R A GK A G LT++ EGNE V+ DDG GLDLE IR +A+E Sbjct: 1492 IRNAVVHGIEAAAPRRAAGKAATGALTLEVQQEGNEVVLHFVDDGGGLDLERIRARAVER 1551 Query: 499 G-AAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHSQPG 557 A +AS+ARL +LIF PG ST+ VS LAGRG+GMDVVR+E ALGG + + S+PG Sbjct: 1552 RLLAPDDDASEARLTELIFAPGFSTADAVSELAGRGVGMDVVRAETVALGGRITLESKPG 1611 Query: 558 QGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEHQGS 617 QG FT++LPL+ A+ V ++ G + +A+PS ++D + QLR P A + L G+ Sbjct: 1612 QGTTFTVHLPLTTAITQVLVISLGARRYAVPSGMIDQVQQLRAPALLDAYNQGRLTVAGA 1671 Query: 618 RLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGPQLA 677 +P + LL+E A G + V+L++ +AV D V GNREVVVK +GP LA Sbjct: 1672 EVPFFYFGALLEEGNAVAA-GRKYSPVVLVRSGAERVAVHVDDVVGNREVVVKHIGPHLA 1730 Query: 678 TLAGVVGATVLGDGQIVLIINPLLLA 703 L G+ GAT LGDG+IVLI NP++LA Sbjct: 1731 RLEGIAGATTLGDGEIVLIYNPVVLA 1756 >B5SH44.1 B5SH44_RALSO Composite two component regulatory protein (Sensor histidine kinase and response regulator hybrid) (C-terminal) (Fragment) Length = 1459 Score = 365 bits (938), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 245/628 (39%), Positives = 338/628 (53%), Gaps = 73/628 (11%) Query: 139 DELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA-RPLHTLKGSARMVGARR 197 D LD ALL +FLEEA + +G+ L D ++GL R LHT+KGSARM GA Sbjct: 671 DALDPALLEIFLEEAHVALPELGQQLREWETAPQDRTVSGLLLRNLHTVKGSARMAGAMT 730 Query: 198 LSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHFAALTQAALLLSAD 257 L H+ME+A V G+ H+R TL L D H AL A LL D Sbjct: 731 LGQAAHEMESA---VDNGLR--HNRVDDTL--FRKLYVWLDRIQAHVDALG-AGKLLPLD 782 Query: 258 GGAR-AP---------------VLPA---------------------------PLIRIRT 274 G R AP +LPA ++R++ Sbjct: 783 AGVRDAPDAPSAAGGDSGAAGSMLPAVAGATSVDLAGARSPETDALEAAERQRAMVRVQA 842 Query: 275 TVLDKLLNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD------ 328 LD L+N GEV AR+RL+ EV +L+S L + + RL ++R+ QA+ Sbjct: 843 RALDALINDAGEVGAARARLEAEVQALKSYLSELNDNVARLRAQVREIEIQAESQMESRI 902 Query: 329 -------------GGDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHT 375 D +Q L +A + + Q+ L G L QA T Sbjct: 903 ADAAAHSEAFDPLEFDRFTRLQELTRMMAESVNDVATVQQNLFRGFDQASLDLETQARLT 962 Query: 376 RELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPL 435 R LQ+ LM ARMV+F+++ R+ + RQ AAETGK + L + +++DR++L+R+ GPL Sbjct: 963 RGLQRSLMRARMVQFDTVADRLYRVARQAAAETGKEVRLFIKGGTVELDRSVLDRMGGPL 1022 Query: 436 EHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKA 495 EH++RNA HGIE AE+R +GK G LT++ EGNE V+ DDG GL+LE IR +A Sbjct: 1023 EHMIRNAVAHGIELAEERRTKGKSPAGELTLEVQQEGNEVVLHFVDDGAGLNLERIRARA 1082 Query: 496 LELG-AAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHS 554 LE A EAS+ARL ++IF PG ST+ QVS LAGRG+GMDVVR+E ALGG + + + Sbjct: 1083 LERQLLAPDEEASEARLTEMIFSPGFSTAQQVSELAGRGVGMDVVRAETVALGGRISLQT 1142 Query: 555 QPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEH 614 P G FT++LPL+ A+ V L+R G++ +AIPS ++D + QLR +A SLE Sbjct: 1143 TPNVGTHFTIHLPLTTAITQVLLVRVGERVYAIPSGMIDHVQQLRPQSLAEAYNAASLEL 1202 Query: 615 QGSRLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGP 674 G +P H + LL+EA P G + ++++ + AV D V GNREVVVK +GP Sbjct: 1203 PGGAVPFHYFGALLEEA-RPVMGGRKYSPAVVVRSGNDRAAVHVDEVIGNREVVVKHIGP 1261 Query: 675 QLATLAGVVGATVLGDGQIVLIINPLLL 702 LA L G+ GAT LGDG++VLI NP++L Sbjct: 1262 HLARLEGIAGATTLGDGEVVLIYNPVVL 1289 >A3RQI2.1 A3RQI2_RALSO Transcription regulator composite two component regulatory protein (Sensor histidine kinase and response regulator hybrid) Length = 2043 Score = 365 bits (937), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 245/628 (39%), Positives = 338/628 (53%), Gaps = 73/628 (11%) Query: 139 DELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA-RPLHTLKGSARMVGARR 197 D LD ALL +FLEEA + +G+ L D ++GL R LHT+KGSARM GA Sbjct: 1255 DALDPALLEIFLEEAHVALPELGQQLREWETAPQDRTVSGLLLRNLHTVKGSARMAGAMT 1314 Query: 198 LSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHFAALTQAALLLSAD 257 L H+ME+A V G+ H+R TL L D H AL A LL D Sbjct: 1315 LGQAAHEMESA---VDNGLR--HNRVDDTL--FRKLYVWLDRIQAHVDALG-AGKLLPLD 1366 Query: 258 GGAR-AP---------------VLPA---------------------------PLIRIRT 274 G R AP +LPA ++R++ Sbjct: 1367 AGVRDAPDAPSAAGGDSGAAGSMLPAVAGATSVDLAGARSPETDALEAAERQRAMVRVQA 1426 Query: 275 TVLDKLLNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD------ 328 LD L+N GEV AR+RL+ EV +L+S L + + RL ++R+ QA+ Sbjct: 1427 RALDALINDAGEVGAARARLEAEVQALKSYLSELNDNVARLRAQVREIEIQAESQMESRI 1486 Query: 329 -------------GGDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHT 375 D +Q L +A + + Q+ L G L QA T Sbjct: 1487 ADAAAHSEAFDPLEFDRFTRLQELTRMMAESVNDVATVQQNLFRGFDQASLDLETQARLT 1546 Query: 376 RELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPL 435 R LQ+ LM ARMV+F+++ R+ + RQ AAETGK + L + +++DR++L+R+ GPL Sbjct: 1547 RGLQRSLMRARMVQFDTVADRLYRVARQAAAETGKEVRLFIKGGTVELDRSVLDRMGGPL 1606 Query: 436 EHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKA 495 EH++RNA HGIE AE+R +GK G LT++ EGNE V+ DDG GL+LE IR +A Sbjct: 1607 EHMIRNAVAHGIELAEERRTKGKSPAGELTLEVQQEGNEVVLHFVDDGAGLNLERIRARA 1666 Query: 496 LELG-AAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHS 554 LE A EAS+ARL ++IF PG ST+ QVS LAGRG+GMDVVR+E ALGG + + + Sbjct: 1667 LERQLLAPDEEASEARLTEMIFSPGFSTAQQVSELAGRGVGMDVVRAETVALGGRISLQT 1726 Query: 555 QPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEH 614 P G FT++LPL+ A+ V L+R G++ +AIPS ++D + QLR +A SLE Sbjct: 1727 TPNVGTHFTIHLPLTTAITQVLLVRVGERVYAIPSGMIDHVQQLRPQSLAEAYNAASLEL 1786 Query: 615 QGSRLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGP 674 G +P H + LL+EA P G + ++++ + AV D V GNREVVVK +GP Sbjct: 1787 PGGAVPFHYFGALLEEA-RPVMGGRKYSPAVVVRSGNDRAAVHVDEVIGNREVVVKHIGP 1845 Query: 675 QLATLAGVVGATVLGDGQIVLIINPLLL 702 LA L G+ GAT LGDG++VLI NP++L Sbjct: 1846 HLARLEGIAGATTLGDGEVVLIYNPVVL 1873 >D8N742.1 D8N742_RALSO Putative composite protein : Response regulator receiver of two component system system (Sensor histidine kinase and response regulator)/transcription regulator, similiraty with pilL protein Length = 2051 Score = 364 bits (934), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 244/628 (38%), Positives = 340/628 (54%), Gaps = 73/628 (11%) Query: 139 DELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA-RPLHTLKGSARMVGARR 197 D LD AL+ +FLEEA + +G+ L A D ++GL R LHT+KGSARM GA Sbjct: 1262 DALDPALVEIFLEEAHVALPELGQQLRAWEAAPQDRTVSGLLLRNLHTVKGSARMAGAMT 1321 Query: 198 LSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHFAALTQAALLLSAD 257 L H+ME+A V G+ H+R L L D H AL A LL D Sbjct: 1322 LGQAAHEMESA---VDNGLR--HNRVDEAL--FRKLYVWLDRIQAHVDALG-AGKLLPLD 1373 Query: 258 GGAR-AP---------------VLPA---------------------------PLIRIRT 274 G R AP +LPA ++R++ Sbjct: 1374 AGLRDAPEAPSAAAGGPASAGAMLPAVAGATSVDLTGARSPEADALEVAERQRAMVRVQA 1433 Query: 275 TVLDKLLNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD------ 328 LD L+N GEV AR+RL+ EV +L+S L + + RL ++R+ QA+ Sbjct: 1434 RALDALINDAGEVGAARARLEAEVQALKSYLAELNDNVARLRAQVREIEIQAESQMESRI 1493 Query: 329 -------------GGDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHT 375 D +Q L +A + + Q+ L G L QA T Sbjct: 1494 ADAAAHSASFDPLEFDRFTRLQELTRMMAESVNDVATVQQNLFRGFDQASLDLETQARLT 1553 Query: 376 RELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPL 435 R LQ+ LM ARMV+F+++ R+ + RQ AAETGK + L + +++DR++L+R+ GPL Sbjct: 1554 RGLQRSLMRARMVQFDTVADRLYRVARQAAAETGKEVRLFIKGGTVELDRSVLDRMGGPL 1613 Query: 436 EHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKA 495 EH++RN+ HGIE AE+R +GKP G LT++ EGNE V+ DDG GL+LE IR +A Sbjct: 1614 EHMIRNSVAHGIELAEERRTKGKPPAGELTLEVQQEGNEVVLHFVDDGAGLNLERIRARA 1673 Query: 496 LELG-AAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHS 554 LE A EAS+ARL ++IF PG ST+PQVS LAGRG+GMDVVR+E ALGG + + + Sbjct: 1674 LERQLLAPDEEASEARLTEMIFSPGFSTAPQVSELAGRGVGMDVVRAETVALGGRISLQT 1733 Query: 555 QPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEH 614 G +FT++LPL+ A+ V L+R G++ +AIPS ++D + QLR +A +LE Sbjct: 1734 TANVGTRFTIHLPLTTAITQVLLVRVGERVYAIPSGMIDHVQQLRPQLLAEAYNAAALEL 1793 Query: 615 QGSRLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGP 674 G +P H + LL+EA P G + ++++ + AV D V GNREVVVK +GP Sbjct: 1794 PGGSVPFHYFGALLEEA-RPVMGGRKYSPAVVVRSGNDRAAVHVDEVIGNREVVVKHIGP 1852 Query: 675 QLATLAGVVGATVLGDGQIVLIINPLLL 702 LA L G+ GAT LGDG+IVLI NP++L Sbjct: 1853 HLARLEGIAGATTLGDGEIVLIYNPVVL 1880 >D8NXL0.1 D8NXL0_RALSO Putative composite protein : Response regulator receiver of two component system system (Sensor histidine kinase and response regulator)/transcription regulator, similiraty with pilL protein Length = 2031 Score = 363 bits (931), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 245/628 (39%), Positives = 339/628 (53%), Gaps = 73/628 (11%) Query: 139 DELDQALLPVFLEEAQELMSSIGEGLEALRQGVADAELAGLA-RPLHTLKGSARMVGARR 197 D LD ALL +FLEEA + +G+ L D ++GL R LHT+KGSARM GA Sbjct: 1243 DALDPALLEIFLEEAHVALPELGQQLREWEAAPQDRTVSGLLLRNLHTVKGSARMAGAMT 1302 Query: 198 LSHCLHQMETALRGVQTGIEGVHDRSSATLAALETLLGLHDLALDHFAALTQAALLLSAD 257 L H+ME+A V G+ H+R L L D H AL A LL D Sbjct: 1303 LGQAAHEMESA---VDNGLR--HNRMDDAL--FRKLYVWLDRIQAHVDALG-AGKLLPLD 1354 Query: 258 GGAR----AP------------VLPA---------------------------PLIRIRT 274 G R AP +LPA ++R++ Sbjct: 1355 AGVRDAADAPSAAGGDPASAGAMLPAVAGATNVGLTGARSPEAEALEAAERQRAMVRVQA 1414 Query: 275 TVLDKLLNQVGEVSIARSRLDNEVGSLQSESKALGEQLMRLSGELRQSGAQAQD------ 328 LD L+N GEV AR+RL++EV +L+S L + + RL ++R+ QA+ Sbjct: 1415 RALDALINDAGEVGAARARLESEVQALKSYLSELNDNVARLRAQVREIEIQAESQMESRI 1474 Query: 329 -------------GGDAVAAMQALAHSLAARLEQASLHQRRLQEGVSSTREGLRQQAAHT 375 D +Q L +A + + Q+ L G L QA T Sbjct: 1475 ADAAAHAATFDPLEFDRFTRLQELTRMMAESVNDVATVQQNLFRGFDQASLDLETQARLT 1534 Query: 376 RELQQELMYARMVKFNSMEVRMQHLVRQVAAETGKPLALDLSNCRLQIDRAILERLMGPL 435 R LQ+ LM ARMV+F+++ R+ + RQ AAETGK + L + +++DR++L+R+ GPL Sbjct: 1535 RGLQRSLMRARMVQFDTVADRLYRVARQAAAETGKEVRLFIKGGTVELDRSVLDRMGGPL 1594 Query: 436 EHLLRNAAVHGIESAEQRLAEGKPAVGRLTVQATHEGNEAVIRVSDDGRGLDLEAIRQKA 495 EH++RNA HGIE AE+R +GK G LT++ EGNE V+ DDG GL+LE IR +A Sbjct: 1595 EHMIRNAVAHGIELAEERRTKGKSPAGELTLEVQQEGNEVVLHFVDDGAGLNLERIRARA 1654 Query: 496 LELG-AAGLAEASQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHS 554 LE A EAS+ARL ++IF PG ST+ QVS LAGRG+GMDVVR+E ALGG + + + Sbjct: 1655 LERQLLAPDEEASEARLTEMIFTPGFSTAQQVSELAGRGVGMDVVRAETVALGGRISLQT 1714 Query: 555 QPGQGVQFTLYLPLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEH 614 PG G +FT++LPL+ A+ V L+R G++ +AIPS ++D + QLR +A +LE Sbjct: 1715 TPGAGTRFTIHLPLTTAITQVLLVRVGERVYAIPSGMIDHVQQLRPQSLAEAYNAAALEL 1774 Query: 615 QGSRLPLHPWHCLLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGP 674 G +P H + LL+EA P G + ++++ AV D V GNREVVVK +GP Sbjct: 1775 PGGPVPFHYFGALLEEA-RPVMGGRKYSPAVVVRSGAERAAVHVDEVIGNREVVVKHIGP 1833 Query: 675 QLATLAGVVGATVLGDGQIVLIINPLLL 702 LA L G+ GAT LGDG+IVLI NP++L Sbjct: 1834 HLARLEGIAGATTLGDGEIVLIYNPVVL 1861