BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0025.0031.p         (111 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITZ4.1 D8ITZ4_HERSS 30S ribosomal protein S12                       225   2e-57
A6T3K9.1 RS12_JANMA 30S ribosomal protein S12                         220   5e-56
A4G9U3.1 RS12_HERAR 30S ribosomal protein S12                         220   5e-56
F1VVQ8.1 F1VVQ8_9BURK SSU ribosomal protein S12p (S23e)               219   1e-55
C3X6G7.1 C3X6G7_OXAFO 30S ribosomal protein S12                       218   2e-55
C5A9F3.1 C5A9F3_BURGB 30S ribosomal protein S12                       216   6e-55
F2LHR6.1 F2LHR6_BURGA 30S ribosomal protein S12                       216   6e-55
C6U027.1 C6U027_BURPS 30S ribosomal protein S12                       215   2e-54
C5ZEK7.1 C5ZEK7_BURPS 30S ribosomal protein S12                       215   2e-54
C4KWX9.1 C4KWX9_BURPS 30S ribosomal protein S12                       215   2e-54

>D8ITZ4.1 D8ITZ4_HERSS 30S ribosomal protein S12
          Length = 127

 Score =  225 bits (573), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60
           VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE
Sbjct: 17  VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76

Query: 61  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK 111
           HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK
Sbjct: 77  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK 127


>A6T3K9.1 RS12_JANMA 30S ribosomal protein S12
          Length = 127

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/111 (97%), Positives = 109/111 (98%)

Query: 1   VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60
           VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE
Sbjct: 17  VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76

Query: 61  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK 111
           HSVVL+RGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG KRAKA KK
Sbjct: 77  HSVVLLRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGTKRAKAGKK 127


>A4G9U3.1 RS12_HERAR 30S ribosomal protein S12
          Length = 127

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 108/111 (97%), Positives = 109/111 (98%)

Query: 1   VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60
           VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE
Sbjct: 17  VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76

Query: 61  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK 111
           HSVVL+RGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYG KRAKA KK
Sbjct: 77  HSVVLLRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGTKRAKAGKK 127


>F1VVQ8.1 F1VVQ8_9BURK SSU ribosomal protein S12p (S23e)
          Length = 127

 Score =  219 bits (558), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 107/111 (96%), Positives = 109/111 (98%)

Query: 1   VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60
           VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE
Sbjct: 17  VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76

Query: 61  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK 111
           HSVVL+RGGRVKDLPGVRYHMVRGALDTQGVKDRKQ+RSKYG KRAKA KK
Sbjct: 77  HSVVLLRGGRVKDLPGVRYHMVRGALDTQGVKDRKQSRSKYGTKRAKAGKK 127


>C3X6G7.1 C3X6G7_OXAFO 30S ribosomal protein S12
          Length = 127

 Score =  218 bits (555), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 106/110 (96%), Positives = 108/110 (98%)

Query: 2   KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61
           KSKSPALEN PQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH
Sbjct: 18  KSKSPALENCPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 77

Query: 62  SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAKK 111
           SVVL+RGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAKRAKAA K
Sbjct: 78  SVVLLRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAKRAKAASK 127


>C5A9F3.1 C5A9F3_BURGB 30S ribosomal protein S12
          Length = 126

 Score =  216 bits (551), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/110 (95%), Positives = 108/110 (98%)

Query: 1   VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60
            KSKSPAL+N PQ+RGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE
Sbjct: 17  TKSKSPALQNCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76

Query: 61  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAK 110
           HSVVLIRGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAKRAKAAK
Sbjct: 77  HSVVLIRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAKRAKAAK 126


>F2LHR6.1 F2LHR6_BURGA 30S ribosomal protein S12
          Length = 126

 Score =  216 bits (551), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/110 (95%), Positives = 108/110 (98%)

Query: 1   VKSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 60
            KSKSPAL+N PQ+RGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE
Sbjct: 17  TKSKSPALQNCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQE 76

Query: 61  HSVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAK 110
           HSVVLIRGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAKRAKAAK
Sbjct: 77  HSVVLIRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAKRAKAAK 126


>C6U027.1 C6U027_BURPS 30S ribosomal protein S12
          Length = 126

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 108/109 (99%)

Query: 2   KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61
           KSKSPAL++ PQ+RGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH
Sbjct: 18  KSKSPALQDCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 77

Query: 62  SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAK 110
           SVVLIRGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAKRAKAAK
Sbjct: 78  SVVLIRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAKRAKAAK 126


>C5ZEK7.1 C5ZEK7_BURPS 30S ribosomal protein S12
          Length = 126

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 108/109 (99%)

Query: 2   KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61
           KSKSPAL++ PQ+RGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH
Sbjct: 18  KSKSPALQDCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 77

Query: 62  SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAK 110
           SVVLIRGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAKRAKAAK
Sbjct: 78  SVVLIRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAKRAKAAK 126


>C4KWX9.1 C4KWX9_BURPS 30S ribosomal protein S12
          Length = 126

 Score =  215 bits (547), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/109 (95%), Positives = 108/109 (99%)

Query: 2   KSKSPALENSPQKRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 61
           KSKSPAL++ PQ+RGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH
Sbjct: 18  KSKSPALQDCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGFEVISYIGGEGHNLQEH 77

Query: 62  SVVLIRGGRVKDLPGVRYHMVRGALDTQGVKDRKQARSKYGAKRAKAAK 110
           SVVLIRGGRVKDLPGVRYHMVRG+LDTQGVKDRKQARSKYGAKRAKAAK
Sbjct: 78  SVVLIRGGRVKDLPGVRYHMVRGSLDTQGVKDRKQARSKYGAKRAKAAK 126