BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0025.0019.p (196 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ITY5.1 D8ITY5_HERSS Transcription antitermination protein nusG 402 e-110 A4G9V0.2 A4G9V0_HERAR Transcription antitermination protein nusG 334 3e-90 A6T3L8.1 A6T3L8_JANMA Transcription antitermination protein nusG 330 7e-89 E5APK2.1 E5APK2_BURRH Transcription antitermination protein nusG 322 2e-86 D5W5R7.1 D5W5R7_BURSC Transcription antitermination protein nusG 320 8e-86 F0FW09.1 F0FW09_9BURK Transcription antitermination protein NusG 318 3e-85 A2WDH1.1 A2WDH1_9BURK Transcription antitermination protein nusG 318 3e-85 B5WSD9.1 B5WSD9_9BURK Transcription antitermination protein nusG 318 3e-85 Q62GJ2.1 Q62GJ2_BURMA Transcription antitermination protein nusG 318 3e-85 A3MRU0.1 A3MRU0_BURM7 Transcription antitermination protein nusG 318 3e-85 >D8ITY5.1 D8ITY5_HERSS Transcription antitermination protein nusG Length = 196 Score = 402 bits (1033), Expect = e-110, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%) Query: 1 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP Sbjct: 1 MSDSTQDSAPIGAQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVP 60 Query: 61 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP 120 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP Sbjct: 61 TEEVVDMKNGHKSVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPP 120 Query: 121 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF Sbjct: 121 HEVDSLLRQMQEGVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIF 180 Query: 181 GRATPVELEFGQLEKV 196 GRATPVELEFGQLEKV Sbjct: 181 GRATPVELEFGQLEKV 196 >A4G9V0.2 A4G9V0_HERAR Transcription antitermination protein nusG Length = 192 Score = 334 bits (857), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 158/176 (89%), Positives = 172/176 (97%) Query: 21 KKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFF 80 KKRWYVVHAYSGMEKSV RALTERI RAGMQ+QFGQILVPTEEV+++KNG KSV+ERRFF Sbjct: 17 KKRWYVVHAYSGMEKSVMRALTERIARAGMQDQFGQILVPTEEVIEVKNGQKSVSERRFF 76 Query: 81 PGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPK 140 PGYVLVEMEMTDETWHLVKNT+KVTGFIGGKSN+PTP+PPHEVD +++QMQEGVEKPRPK Sbjct: 77 PGYVLVEMEMTDETWHLVKNTSKVTGFIGGKSNKPTPIPPHEVDKIMQQMQEGVEKPRPK 136 Query: 141 VLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 VLYEVGEMVRIK+GPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQ+EKV Sbjct: 137 VLYEVGEMVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 192 >A6T3L8.1 A6T3L8_JANMA Transcription antitermination protein nusG Length = 199 Score = 330 bits (846), Expect = 7e-89, Method: Compositional matrix adjust. Identities = 154/176 (87%), Positives = 171/176 (97%) Query: 21 KKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFF 80 KKRWYVVHAYSGMEKSVQRAL ER RAGM+++FGQILVPTEEV+++KNGHKSV+ERRFF Sbjct: 24 KKRWYVVHAYSGMEKSVQRALIERAARAGMEDKFGQILVPTEEVIEVKNGHKSVSERRFF 83 Query: 81 PGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPK 140 PGYVLVEMEMTDETWHLVKNT KVTGFIGGKSN+PTP+PPHEVD +++QMQ+GVEKPRPK Sbjct: 84 PGYVLVEMEMTDETWHLVKNTNKVTGFIGGKSNKPTPIPPHEVDKIMQQMQDGVEKPRPK 143 Query: 141 VLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 VLYEVGE+VRIK+GPFTDFNGNVEEVNYEKS+VRVSVTIFGRATPVELEFGQ+EKV Sbjct: 144 VLYEVGELVRIKDGPFTDFNGNVEEVNYEKSKVRVSVTIFGRATPVELEFGQVEKV 199 >E5APK2.1 E5APK2_BURRH Transcription antitermination protein nusG Length = 185 Score = 322 bits (825), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 152/184 (82%), Positives = 169/184 (91%) Query: 13 AQSVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHK 72 + S + +G KRWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK Sbjct: 2 SDSAASSGGKRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEIKGGHK 61 Query: 73 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQE 132 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ EVD ++ QMQE Sbjct: 62 SVTERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISQREVDKIMSQMQE 121 Query: 133 GVEKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQ 192 GVEKPRPK L+EVGE+VR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ Sbjct: 122 GVEKPRPKTLFEVGELVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQ 181 Query: 193 LEKV 196 +EKV Sbjct: 182 VEKV 185 >D5W5R7.1 D5W5R7_BURSC Transcription antitermination protein nusG Length = 185 Score = 320 bits (819), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 152/175 (86%), Positives = 165/175 (94%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQEQFGQILVPTEEVV++K GHKSVTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQEQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >F0FW09.1 F0FW09_9BURK Transcription antitermination protein NusG Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/175 (86%), Positives = 164/175 (93%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK+VTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRPTP+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EKV Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >A2WDH1.1 A2WDH1_9BURK Transcription antitermination protein nusG Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/175 (86%), Positives = 164/175 (93%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK+VTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRPTP+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPTPISPKEVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EKV Sbjct: 131 LFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKV 185 >B5WSD9.1 B5WSD9_9BURK Transcription antitermination protein nusG Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/175 (86%), Positives = 164/175 (93%) Query: 22 KRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSVTERRFFP 81 KRWYVVHAYSGMEKSVQRAL ERI RAGMQ QFGQILVPTEEVV++K GHKSVTERRFFP Sbjct: 11 KRWYVVHAYSGMEKSVQRALQERIERAGMQNQFGQILVPTEEVVEVKGGHKSVTERRFFP 70 Query: 82 GYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGVEKPRPKV 141 GYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGVEKPRPK Sbjct: 71 GYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGVEKPRPKT 130 Query: 142 LYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLEKV 196 L+EVGEMVR+KEGPFTDFNG+VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+EK+ Sbjct: 131 LFEVGEMVRVKEGPFTDFNGSVEEVNYEKSRVRVSVTIFGRATPVELEFGQVEKL 185 >Q62GJ2.1 Q62GJ2_BURMA Transcription antitermination protein nusG Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/182 (84%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 15 SVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSV 74 S S +GK RWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK+V Sbjct: 5 SASPSGK-RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAV 63 Query: 75 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGV 134 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGV Sbjct: 64 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGV 123 Query: 135 EKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLE 194 EKPRPK L+EVGEMVR+KEGPFTDFNG VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+E Sbjct: 124 EKPRPKTLFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVE 183 Query: 195 KV 196 KV Sbjct: 184 KV 185 >A3MRU0.1 A3MRU0_BURM7 Transcription antitermination protein nusG Length = 185 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/182 (84%), Positives = 168/182 (92%), Gaps = 1/182 (0%) Query: 15 SVSGAGKKRWYVVHAYSGMEKSVQRALTERINRAGMQEQFGQILVPTEEVVDMKNGHKSV 74 S S +GK RWYVVHAYSGMEKSVQRAL ERI RAGMQ++FGQILVPTEEVV++K GHK+V Sbjct: 5 SASPSGK-RWYVVHAYSGMEKSVQRALQERIERAGMQDKFGQILVPTEEVVEVKGGHKAV 63 Query: 75 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFIGGKSNRPTPLPPHEVDSLLRQMQEGV 134 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGF+GG NRP+P+ P EV+ ++ QMQEGV Sbjct: 64 TERRFFPGYVLVEMEMTDETWHLVKNTAKVTGFVGGARNRPSPISPREVEKIMSQMQEGV 123 Query: 135 EKPRPKVLYEVGEMVRIKEGPFTDFNGNVEEVNYEKSRVRVSVTIFGRATPVELEFGQLE 194 EKPRPK L+EVGEMVR+KEGPFTDFNG VEEVNYEKSRVRVSVTIFGRATPVELEFGQ+E Sbjct: 124 EKPRPKTLFEVGEMVRVKEGPFTDFNGTVEEVNYEKSRVRVSVTIFGRATPVELEFGQVE 183 Query: 195 KV 196 KV Sbjct: 184 KV 185