BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0022.0262.p         (80 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IWY9.1 D8IWY9_HERSS Type I site-specific deoxyribonuclease spe...   166   1e-39
A6DIK4.1 A6DIK4_9BACT Type I restriction-modification system spe...    72   2e-11
E2ZFT3.1 E2ZFT3_9FIRM Type I restriction modification DNA specif...    72   2e-11
Q1K3D0.1 Q1K3D0_DESAC Restriction modification system DNA specif...    70   7e-11
A7MSG7.1 A7MSG7_VIBHB Putative uncharacterized protein                 69   2e-10
D7UY96.1 D7UY96_LISGR Type I restriction-modification system spe...    67   1e-09

>D8IWY9.1 D8IWY9_HERSS Type I site-specific deoxyribonuclease specificity
           subunit protein EC=3.1.21.3
          Length = 421

 Score =  166 bits (420), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/80 (100%), Positives = 80/80 (100%)

Query: 1   VQHCSLDSYFETVNDFLGGGTRQRISRSALGKFVVKVPDFEEQKKIGTYFRTLDELISKH 60
           VQHCSLDSYFETVNDFLGGGTRQRISRSALGKFVVKVPDFEEQKKIGTYFRTLDELISKH
Sbjct: 342 VQHCSLDSYFETVNDFLGGGTRQRISRSALGKFVVKVPDFEEQKKIGTYFRTLDELISKH 401

Query: 61  ASQLQKLQQIKSACLEKMFV 80
           ASQLQKLQQIKSACLEKMFV
Sbjct: 402 ASQLQKLQQIKSACLEKMFV 421


>A6DIK4.1 A6DIK4_9BACT Type I restriction-modification system specificity
           subunit
          Length = 405

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/69 (49%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 13  VNDFLGGGTRQRISRSALGKFVVKVPD-FEEQKKIGTYFRTLDELISKHASQLQKLQQIK 71
           +  FL GG R +++ S +    + +P+  +EQ+KIG+YF++LD LIS+H  Q+QKLQ IK
Sbjct: 337 IEPFLVGGGRAKLNASVMMNLGLSLPEKIQEQEKIGSYFKSLDNLISQHDQQIQKLQNIK 396

Query: 72  SACLEKMFV 80
            ACL KMFV
Sbjct: 397 QACLSKMFV 405


>E2ZFT3.1 E2ZFT3_9FIRM Type I restriction modification DNA specificity domain
           protein
          Length = 424

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 51/80 (63%), Gaps = 1/80 (1%)

Query: 1   VQHCSLDSYFETVNDFLGGGTRQRISRSALGKFVVKVPDFE-EQKKIGTYFRTLDELISK 59
           +Q+ S  +YF+ VN  L GGTRQRISR  L +F V +P  + EQ+KIG     LD LI+ 
Sbjct: 133 LQYLSSQAYFDAVNTCLAGGTRQRISRGNLAQFNVPIPSSKIEQEKIGEILEKLDTLITL 192

Query: 60  HASQLQKLQQIKSACLEKMF 79
           H  + +KL  IK + L+KMF
Sbjct: 193 HQRKYEKLVNIKKSMLDKMF 212


>Q1K3D0.1 Q1K3D0_DESAC Restriction modification system DNA specificity domain
          Length = 417

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/56 (60%), Positives = 41/56 (73%)

Query: 25  ISRSALGKFVVKVPDFEEQKKIGTYFRTLDELISKHASQLQKLQQIKSACLEKMFV 80
           I+     ++   VP   EQKKIGTYFR  D LIS+HA+QL+KL+QIKSACL KMFV
Sbjct: 362 INAKEYSEYTFLVPSVTEQKKIGTYFRKFDALISQHATQLKKLKQIKSACLGKMFV 417


>A7MSG7.1 A7MSG7_VIBHB Putative uncharacterized protein
          Length = 400

 Score = 69.3 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 11/85 (12%)

Query: 7   DSYF-----------ETVNDFLGGGTRQRISRSALGKFVVKVPDFEEQKKIGTYFRTLDE 55
           DSYF           + V++ + G + +RISR+ L K  +  P  +EQ KIG YF  LD 
Sbjct: 316 DSYFLMSYLNTAECLKVVSEGVSGTSHKRISRANLVKVNIPFPSIDEQIKIGKYFENLDG 375

Query: 56  LISKHASQLQKLQQIKSACLEKMFV 80
           LI++H  Q+ K++ IK ACL+KMFV
Sbjct: 376 LINQHNQQITKIKNIKQACLDKMFV 400


>D7UY96.1 D7UY96_LISGR Type I restriction-modification system specificity
           subunit
          Length = 203

 Score = 66.6 bits (161), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 46/69 (66%)

Query: 12  TVNDFLGGGTRQRISRSALGKFVVKVPDFEEQKKIGTYFRTLDELISKHASQLQKLQQIK 71
            +  FL GG R +++ + L K  VK+P F EQKKIGT+F+ LD  I+ H S+++KL  +K
Sbjct: 135 NIEPFLVGGGRAKLTSNTLMKLPVKIPTFLEQKKIGTFFQQLDNTITLHHSKIEKLTTLK 194

Query: 72  SACLEKMFV 80
            A L+ +F+
Sbjct: 195 KAYLKNLFI 203