BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0242.p (228 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWX1.1 D8IWX1_HERSS GntR family transcription regulator protein 454 e-126 Q1LHQ9.1 Q1LHQ9_RALME Transcriptional regulator, GntR-family 273 1e-71 Q0K5S2.1 Q0K5S2_CUPNH Transcriptional regulator, GntR-family 272 3e-71 Q46W45.1 Q46W45_CUPPJ Transcriptional regulator, GntR family 270 2e-70 B3R7G9.1 B3R7G9_CUPTR Putative TRANSCRIPTION REGULATOR, GntR family 268 4e-70 E3HMA9.1 E3HMA9_ACHXA Bacterial regulatory protein, GntR family ... 266 2e-69 E5U386.1 E5U386_ALCXX GntR-family transcriptional regulator 265 5e-69 D4XEE4.1 D4XEE4_9BURK GntR family transcriptional regulator 263 2e-68 Q7VWQ9.1 Q7VWQ9_BORPE Putative gntR-family transcriptional regul... 258 3e-67 Q7WJU0.1 Q7WJU0_BORBR Putative gntR-family transcriptional regul... 258 5e-67 >D8IWX1.1 D8IWX1_HERSS GntR family transcription regulator protein Length = 228 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 227/228 (99%), Positives = 228/228 (100%) Query: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK Sbjct: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 Query: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA Sbjct: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 Query: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH Sbjct: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 Query: 181 RAFIAAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 RAFIAAARAGDTERA+ELMEHHLLHVEQALAFEPKAGPRKDLLRELLS Sbjct: 181 RAFIAAARAGDTERAMELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 >Q1LHQ9.1 Q1LHQ9_RALME Transcriptional regulator, GntR-family Length = 230 Score = 273 bits (698), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/224 (61%), Positives = 174/224 (77%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+ATP DY R+E HL ER+++ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFTVRRILEAALAREFVAKATPADYKRIEKHLTAERKSLGGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 Q R+ LL DFHI+LA +VGN V+T I+ +L+ RSA+ITMLYQS RDA CSS+EHRAFI A Sbjct: 127 QTRTRLLGDFHIVLAEVVGNSVMTGIMRELSMRSAVITMLYQSRRDATCSSDEHRAFIDA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFE--PKAGPRKDLLRELLS 228 ARAGD E A++LM HL HVE AL FE P A KDL+ LL+ Sbjct: 187 ARAGDAELAVKLMVEHLAHVEAALHFEEVPAAARGKDLVAALLA 230 >Q0K5S2.1 Q0K5S2_CUPNH Transcriptional regulator, GntR-family Length = 230 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 138/224 (61%), Positives = 175/224 (78%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIAEDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+ATP DY R++ HL ER+A+ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATPADYKRIDRHLAAERKALGGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSTRSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFEPKA--GPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE A KDL+ LL+ Sbjct: 187 ARAGDVERAVTLMVDHLGHVEGALHFEETAPVSRGKDLVTALLA 230 >Q46W45.1 Q46W45_CUPPJ Transcriptional regulator, GntR family Length = 230 Score = 270 bits (689), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 173/224 (77%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+A P DY R++ HL ER+++ + Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKAKPADYKRIDKHLASERKSIEGVDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 Q R+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QTRTRLLGDFHIVLAEVVGNSVLTEMMRELSARSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFE--PKAGPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE P A KDL+ LL+ Sbjct: 187 ARAGDVERAVALMVDHLSHVEAALHFEESPPAARGKDLVAALLA 230 >B3R7G9.1 B3R7G9_CUPTR Putative TRANSCRIPTION REGULATOR, GntR family Length = 230 Score = 268 bits (685), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 175/224 (78%), Gaps = 3/224 (1%) Query: 8 PD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIP 66 PD +++AIA DI A I + RLPPG KL EEALA VY+VSRTK+RAAL+ML+KDK++ ++P Sbjct: 7 PDMTAEAIADDIVAAIVSHRLPPGTKLREEALASVYRVSRTKVRAALLMLSKDKVIQIVP 66 Query: 67 DKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNM 126 DKGAFV+KP+ EE R +F VRR LE+A+ REFVA+AT DY R++ HL ER++++ ++ Sbjct: 67 DKGAFVAKPSAEEAREVFAVRRILEAALAREFVAKATAADYKRIDRHLAAERKSLAGNDA 126 Query: 127 QVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAA 186 QVR+ LL DFHI+LA +VGN VLT+++ +L+ RSA+ITMLYQS RDAACSS+EHR FI A Sbjct: 127 QVRTRLLGDFHIVLAEVVGNGVLTEMMRELSARSAVITMLYQSRRDAACSSDEHREFIEA 186 Query: 187 ARAGDTERAIELMEHHLLHVEQALAFEPKA--GPRKDLLRELLS 228 ARAGD ERA+ LM HL HVE AL FE A KDL+ LL+ Sbjct: 187 ARAGDVERAVTLMVDHLGHVEGALHFEETAPVARGKDLVAALLA 230 >E3HMA9.1 E3HMA9_ACHXA Bacterial regulatory protein, GntR family protein 40 Length = 228 Score = 266 bits (679), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 136/224 (60%), Positives = 169/224 (75%), Gaps = 1/224 (0%) Query: 6 PAPD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDL 64 P PD S+D IA +I+A I A +LPPG +L EEALA VYQVSRTKIRAAL+ML+KDKL+ + Sbjct: 5 PRPDPSADDIAKEISAAIVAHKLPPGTRLREEALAGVYQVSRTKIRAALLMLSKDKLIHI 64 Query: 65 IPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDD 124 +PDKGAFVSKP E R ++ VRR LE+A+ REFVARAT DY R++AHL ERQA++ Sbjct: 65 VPDKGAFVSKPDANEAREVYAVRRILEAALAREFVARATAADYRRIDAHLAAERQALAGG 124 Query: 125 NMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFI 184 ++Q R+ LL FHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+CSS+EH AFI Sbjct: 125 DVQERNRLLGHFHILLAETVGNSVLTGMLRELSARSAVITVLYQSSHDASCSSQEHHAFI 184 Query: 185 AAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 AARAGD ERA LM+ HL HV+ AL F+ DL+ LLS Sbjct: 185 EAARAGDAERACALMDAHLEHVQTALNFKNGGRTGGDLVSALLS 228 >E5U386.1 E5U386_ALCXX GntR-family transcriptional regulator Length = 249 Score = 265 bits (676), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 136/228 (59%), Positives = 168/228 (73%) Query: 1 MTDSAPAPDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDK 60 MT + P S+D IA ++AA I A RLPPG +L EEALARVY+VSRTKIRAAL+ML+KDK Sbjct: 22 MTQAVPPDPSADDIAKEVAAAIVAHRLPPGTRLREEALARVYKVSRTKIRAALLMLSKDK 81 Query: 61 LVDLIPDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQA 120 L++++PDKGAFVSKP E R ++ VRR LE+A+ REFV RAT DY R++AHL ER A Sbjct: 82 LINIVPDKGAFVSKPDANEAREVYAVRRILEAALAREFVTRATAADYRRIDAHLAEERAA 141 Query: 121 VSDDNMQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEH 180 V ++Q R+ LL DFHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+CSS EH Sbjct: 142 VESGDVQARNRLLGDFHILLAEAVGNSVLTGMLRELSARSAVITVLYQSSHDASCSSREH 201 Query: 181 RAFIAAARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 AFI AARAGD +RA LM+ HL HV+ AL F DL+ LLS Sbjct: 202 HAFIEAARAGDVDRACALMDEHLEHVQTALDFSEGDRAGGDLVAALLS 249 >D4XEE4.1 D4XEE4_9BURK GntR family transcriptional regulator Length = 254 Score = 263 bits (671), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 134/223 (60%), Positives = 170/223 (76%), Gaps = 1/223 (0%) Query: 7 APD-SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLI 65 +PD S+D IA ++AA I A +LPPG +L EEALARVY+VSRTKIRAAL+ML+KDKL++++ Sbjct: 32 SPDPSADDIAKEVAAAIVAHKLPPGTRLREEALARVYKVSRTKIRAALLMLSKDKLINIV 91 Query: 66 PDKGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDN 125 PDKGAFVSKP E R ++ VRR LE+A+ +EFVARAT DY R++AHL ER A+ + Sbjct: 92 PDKGAFVSKPDANEAREVYAVRRILEAALAKEFVARATAADYRRIDAHLAEERAALEAGD 151 Query: 126 MQVRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIA 185 +Q R+ LL FHILLA VGN VLT +L +L+ RSA+IT+LYQS+ DA+CSS+EH AFI Sbjct: 152 VQKRNQLLGHFHILLAETVGNSVLTGMLRELSARSAVITVLYQSSHDASCSSQEHHAFIE 211 Query: 186 AARAGDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 AARAGDT+RA LM+ HL HV+ AL F A DL+ LLS Sbjct: 212 AARAGDTDRACALMDEHLEHVQTALNFTDGAAAGSDLVTALLS 254 >Q7VWQ9.1 Q7VWQ9_BORPE Putative gntR-family transcriptional regulator Length = 226 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 127/219 (57%), Positives = 166/219 (75%) Query: 10 SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKG 69 S++ I+ IAA I + RLPPG +L EEALA VY+VSRTKIRAAL+ML+KDKL+ ++PDKG Sbjct: 8 SAEGISQAIAAAIVSHRLPPGTRLREEALASVYKVSRTKIRAALLMLSKDKLIQIVPDKG 67 Query: 70 AFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQVR 129 AFVSKP E R ++ VRR LE+A+ REFVA A P+DY RLE HL ER+A+ + ++Q R Sbjct: 68 AFVSKPDAHEAREVYAVRRILEAALAREFVACAAPQDYERLEQHLHQEREAIHEGDVQRR 127 Query: 130 STLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAARA 189 + LL+ FH+ LA IVGN VLT +L +L R+A+IT++YQS DA+CSS+EH AF+AAAR Sbjct: 128 NQLLAGFHLQLAEIVGNSVLTAMLHELLARTAVITVMYQSAHDASCSSQEHYAFLAAARD 187 Query: 190 GDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 GD ERA LM+ HLLH++ AL F+ P +DL+ LLS Sbjct: 188 GDAERACALMDEHLLHLQTALDFDGAPAPNRDLVAALLS 226 >Q7WJU0.1 Q7WJU0_BORBR Putative gntR-family transcriptional regulator Length = 226 Score = 258 bits (658), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 126/219 (57%), Positives = 165/219 (75%) Query: 10 SSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPDKG 69 S++ I+ IA I + RLPPG +L EEALA VY+VSRTKIRAAL+ML+KDKL+ ++PDKG Sbjct: 8 SAEGISQAIATAIVSHRLPPGTRLREEALASVYKVSRTKIRAALLMLSKDKLIQIVPDKG 67 Query: 70 AFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQVR 129 AFVSKP E R ++ VRR LE+A+ REFVA A P+DY RLE HL ER+A+ + ++Q R Sbjct: 68 AFVSKPDAHEAREVYAVRRILEAALAREFVACAAPQDYERLEQHLHQEREAIHEGDVQRR 127 Query: 130 STLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAARA 189 + LL+ FH+ LA IVGN VLT +L +L R+A+IT++YQS DA+CSS+EH AF+AAAR Sbjct: 128 NQLLAGFHLQLAEIVGNSVLTAMLHELLARTAVITVMYQSAHDASCSSQEHYAFLAAARE 187 Query: 190 GDTERAIELMEHHLLHVEQALAFEPKAGPRKDLLRELLS 228 GD ERA LM+ HLLH++ AL F+ P +DL+ LLS Sbjct: 188 GDAERACALMDEHLLHLQTALDFDGAPAPNRDLVAALLS 226