BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0229.p (131 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IWW0.1 D8IWW0_HERSS Transmembrane outer membrane porin signal ... 246 6e-64 D8NBW2.1 D8NBW2_RALSO Putative outer membrane porin protein 141 4e-32 Q46ZG9.1 Q46ZG9_CUPPJ Porin, Gram-negative type 140 4e-32 Q8XYM1.1 Q8XYM1_RALSO Putative transmembrane outer membrane pori... 140 6e-32 B5SKF8.1 B5SKF8_RALSO Transmembrane outer membrane porin protein 138 2e-31 B5S0Z4.1 B5S0Z4_RALSO Transmembrane outer membrane porin protein 138 2e-31 A3RYD7.1 A3RYD7_RALSO Outer membrane porin protein 32 138 2e-31 D8NJ16.1 D8NJ16_RALSO Putative outer membrane porin protein 138 2e-31 B3R1L6.1 B3R1L6_CUPTR Putative outer membrane porin protein 136 1e-30 D8NTI8.1 D8NTI8_RALSO Putative outer membrane porin protein 134 6e-30 >D8IWW0.1 D8IWW0_HERSS Transmembrane outer membrane porin signal peptide protein Length = 354 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 119/119 (100%), Positives = 119/119 (100%) Query: 13 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAND 72 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAND Sbjct: 236 QPSEAWKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVAND 295 Query: 73 ADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 131 ADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF Sbjct: 296 ADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 354 >D8NBW2.1 D8NBW2_RALSO Putative outer membrane porin protein Length = 353 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 92/138 (66%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y+FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAATQRSDMYWAGASYEFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ G+T G+QHRF Sbjct: 336 AGFGNSQVGVTAGLQHRF 353 >Q46ZG9.1 Q46ZG9_CUPPJ Porin, Gram-negative type Length = 367 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/109 (64%), Positives = 83/109 (76%), Gaps = 1/109 (0%) Query: 23 GYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVANDADPIMYSLRL 82 GYR YK++L TGAA RSD +WGGA+Y FTPA TL GA+Y QNIK NDADPI++SLR Sbjct: 260 GYRNYKRTLTTGAASERSDMYWGGASYDFTPAFTLYGAVYKQNIKG-GNDADPILFSLRA 318 Query: 83 KYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 131 +Y+ SKRT YLS YAKA+NGQ V LSRD GY +SQ G+ G+QHRF Sbjct: 319 QYSFSKRTLAYLSAGYAKARNGQNVSLSRDFVGYANSQTGVMAGLQHRF 367 >Q8XYM1.1 Q8XYM1_RALSO Putative transmembrane outer membrane porin signal peptide protein Length = 353 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 75/138 (54%), Positives = 91/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAATQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ G+T G+QHRF Sbjct: 336 AGFGNSQVGVTAGLQHRF 353 >B5SKF8.1 B5SKF8_RALSO Transmembrane outer membrane porin protein Length = 353 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G+T G+QHRF Sbjct: 336 VGFGNSQVGVTAGLQHRF 353 >B5S0Z4.1 B5S0Z4_RALSO Transmembrane outer membrane porin protein Length = 353 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G+T G+QHRF Sbjct: 336 VGFGNSQVGVTAGLQHRF 353 >A3RYD7.1 A3RYD7_RALSO Outer membrane porin protein 32 Length = 353 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G+T G+QHRF Sbjct: 336 VGFGNSQVGVTAGLQHRF 353 >D8NJ16.1 D8NJ16_RALSO Putative outer membrane porin protein Length = 353 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 74/138 (53%), Positives = 90/138 (65%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GYR YK++ T AA RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYRNYKRAFTTAAAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V LSRD Sbjct: 277 AFTLFGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSLSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 G+G+SQ G+T G+QHRF Sbjct: 336 VGFGNSQVGVTAGLQHRF 353 >B3R1L6.1 B3R1L6_CUPTR Putative outer membrane porin protein Length = 354 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 68/113 (60%), Positives = 84/113 (74%), Gaps = 1/113 (0%) Query: 19 KFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTPAMTLIGAIYYQNIKNVANDADPIMY 78 K GYR YK++ TGAA RSD +WGGA+Y FTPA TL GA+Y QNIK NDADPI++ Sbjct: 243 KLFAGYRNYKRAFTTGAASQRSDMYWGGASYAFTPAFTLYGAVYKQNIKG-GNDADPILF 301 Query: 79 SLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDDAGYGSSQFGMTLGMQHRF 131 SLR +YA+SKRT YLS YAKA+NGQ V +SRD G+ ++Q G+ G+QHRF Sbjct: 302 SLRGQYALSKRTLAYLSVGYAKARNGQDVSVSRDLVGFANNQTGVMAGLQHRF 354 >D8NTI8.1 D8NTI8_RALSO Putative outer membrane porin protein Length = 353 Score = 134 bits (336), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 72/138 (52%), Positives = 89/138 (64%), Gaps = 9/138 (6%) Query: 2 TAPPAPTWPQIQPSEA--------WKFNLGYRYYKKSLATGAADLRSDFFWGGAAYKFTP 53 + PA T IQ A K GY YK++ T A RSD +W GA+Y FTP Sbjct: 217 STTPADTTDYIQGIHAGASYDFGALKLFAGYGNYKRAFTTATAAQRSDMYWAGASYDFTP 276 Query: 54 AMTLIGAIYYQNIKNVANDADPIMYSLRLKYAMSKRTDLYLSTAYAKAKNGQLVGLSRDD 113 A TL GA+Y QNIK DADPI++SLR +YA+SKRT YL+ YAKA+NGQ V +SRD Sbjct: 277 AFTLYGAVYKQNIKG-GTDADPILFSLRAQYALSKRTTAYLAGGYAKARNGQNVSMSRDV 335 Query: 114 AGYGSSQFGMTLGMQHRF 131 AG+G+SQ G+T G+QHRF Sbjct: 336 AGFGNSQVGVTAGLQHRF 353