BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0022.0057.p (293 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IVN3.1 D8IVN3_HERSS LysR family transcription regulator protein 588 e-166 E6V231.1 E6V231_VARPD Transcriptional regulator, LysR family 301 8e-80 A6W1Z5.1 A6W1Z5_MARMS Transcriptional regulator, LysR family 293 2e-77 F2K2N4.1 F2K2N4_9GAMM Transcriptional regulator, LysR family 288 5e-76 C6CDC8.1 C6CDC8_DICDC Transcriptional regulator, LysR family 283 2e-74 E0SMP1.1 E0SMP1_DICD3 Transcriptional regulator, LysR family 281 6e-74 Q471B1.1 Q471B1_CUPPJ Regulatory protein, LysR:LysR, substrate-b... 281 8e-74 C5CLH0.1 C5CLH0_VARPS Transcriptional regulator, LysR family 277 2e-72 C6BMH7.1 C6BMH7_RALP1 Transcriptional regulator, LysR family 274 1e-71 B2UHH7.1 B2UHH7_RALPJ Transcriptional regulator, LysR family 274 1e-71 >D8IVN3.1 D8IVN3_HERSS LysR family transcription regulator protein Length = 333 Score = 588 bits (1515), Expect = e-166, Method: Compositional matrix adjust. Identities = 293/293 (100%), Positives = 293/293 (100%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA Sbjct: 41 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 100 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS Sbjct: 101 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 160 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE Sbjct: 161 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 220 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI Sbjct: 221 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 280 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIARAAGRH 293 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIARAAGRH Sbjct: 281 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIARAAGRH 333 >E6V231.1 E6V231_VARPD Transcriptional regulator, LysR family Length = 303 Score = 301 bits (771), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 143/286 (50%), Positives = 209/286 (73%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 VRYFLEVV+ GS+ EAA LNVA SA+SRQ+ARLE ELDT LFER ARGM PNAAGELLA Sbjct: 11 VRYFLEVVKTGSVKEAALKLNVAPSAVSRQVARLERELDTLLFERHARGMEPNAAGELLA 70 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 AHA R Q E ER+ N++A+L+GLR G V++A TEGFA +F+P I F R+H+GIRF L Sbjct: 71 AHAKRAQQEIERVANDIASLRGLRSGHVRVASTEGFAFDFIPTLIAHFRRKHEGIRFHLE 130 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V + +++++R+G D+G+T + P+A I++E +P+LA+M H LA ++Q+SL + Sbjct: 131 VCSLADISRRVRDGEADVGVTLSAVPEAGIEIELRHPSPVLALMAKGHPLAAQRQLSLRQ 190 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 + YPL +P++ ++RRL+DA C+R+ + ++++ +ALL F AG GI F AL I Sbjct: 191 VVAYPLGLPQEDSSIRRLLDASCTRQGLRYAQAMSSNHANALLSFAAAGGGIAFYGALSI 250 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALI 286 R L++ L A+P++D++MN L+I+++AGR+LPDA++AF+ L+ Sbjct: 251 RTLLQSKALVAIPLKDREMNERHLQIETMAGRSLPDASKAFVRYLV 296 >A6W1Z5.1 A6W1Z5_MARMS Transcriptional regulator, LysR family Length = 306 Score = 293 bits (751), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 138/288 (47%), Positives = 210/288 (72%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYFLEV R GSI+EA+ LNVA+SAISRQI LE L+T LFER RGM +AAGE+LA Sbjct: 12 LRYFLEVARYGSISEASLHLNVAASAISRQINNLEDILNTTLFERRPRGMELSAAGEMLA 71 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 +A + LE++RI +E+AAL+GL RG VK++C+EGFA+EF+P +I F +QH GI FQ++ Sbjct: 72 VYARKNALESDRIVSEIAALEGLNRGHVKISCSEGFAMEFLPRSIASFRKQHDGIHFQIN 131 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V + V++++ G D+G+T +++P DI+V + Q +PILAV++P H LA++K +SL++ Sbjct: 132 VSSPGEVSRRVSHGDADIGVTLSLSPAKDIQVAYRQPSPILAVVNPNHPLANKKSISLAQ 191 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 L PYP+A+P+++ T+R+L D CCSR N+L +P L +++++ L F G+ + + I Sbjct: 192 LQPYPIALPEESTTVRQLFDICCSRLNLLFDPVLVSNNMATLNRFTTYDGGVHLAGEISI 251 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIAR 288 R + +L A+PIRD+ M+ +E+Q+L+GRTLP AAR FL+ +I + Sbjct: 252 RHQLSSSELVAIPIRDRGMDIRNIEVQTLSGRTLPAAARVFLDYMIEK 299 >F2K2N4.1 F2K2N4_9GAMM Transcriptional regulator, LysR family Length = 308 Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 139/288 (48%), Positives = 197/288 (68%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYFLEV + GSI+EA+ LNVA+SAISRQI+ LE L LFER RGM+ +AAGE+LA Sbjct: 12 IRYFLEVAQLGSISEASVRLNVATSAISRQISSLEDTLGAHLFERQPRGMKLSAAGEMLA 71 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 A+A + LE+ R+ E+ AL GL +G V +AC+EGFA++F+P TI F +QH GI F L Sbjct: 72 AYARKNALESARVVAEIGALNGLEKGHVNIACSEGFAMDFIPRTISNFRQQHNGIHFHLK 131 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V VA+ + G D+G+T +++P DI VE+ Q +PI+AV HP H LAH+K VSL++ Sbjct: 132 VCAPGDVAKLVSHGESDIGITLSLSPTKDITVEYRQPSPIMAVFHPTHPLAHKKSVSLAQ 191 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 L PYP+A+P++ T+R+L D CCSR N+L EP L ++ ++ L F G G+ S + + Sbjct: 192 LQPYPIALPEENTTVRQLFDICCSRLNLLFEPILESNHMATLSRFTSFGGGMHLSGEISM 251 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIAR 288 R + +L A+PIRD+ M+ EIQ+L+GRTLP + FL+ LI + Sbjct: 252 RHQIATQELIAVPIRDRGMDVRNTEIQTLSGRTLPAVVKVFLDYLIDK 299 >C6CDC8.1 C6CDC8_DICDC Transcriptional regulator, LysR family Length = 307 Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 143/286 (50%), Positives = 193/286 (67%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYFLEVVR GSI+EAA LNVA SAISRQI+ LE L+T LFER GM P AAGELLA Sbjct: 11 IRYFLEVVRSGSISEAAQRLNVAGSAISRQISGLEDRLNTTLFERRKSGMTPTAAGELLA 70 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 A+A R QLE E++ E+ L+GLRRG+V++ T GF+L+F+P I F +++ IRFQL Sbjct: 71 AYAFRNQLETEQVTQEIRELQGLRRGDVRIVSTAGFSLDFIPMAISSFRQRYPYIRFQLL 130 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V A VA+++ EG D+GLTF+ P A+I V + +P++AVM H LA + + LS+ Sbjct: 131 VATAEEVARRLNEGESDIGLTFSQIPTANIHVAYRLHSPLVAVMQRHHPLAEKTNLRLSQ 190 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 LA YPL +P + I RRL DACCSR+ +L++P SISALL F G+ S L + Sbjct: 191 LAGYPLGVPVRHILTRRLFDACCSRQGLLIDPAFETTSISALLAFSRYCDGVVISTELVV 250 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALI 286 R+ +++ + A+PI +D+N L +E+ +LAGRTLP A AF LI Sbjct: 251 RQYLKDHDMVAVPITGQDLNGLNIELNTLAGRTLPKAVSAFTEHLI 296 >E0SMP1.1 E0SMP1_DICD3 Transcriptional regulator, LysR family Length = 307 Score = 281 bits (720), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 143/286 (50%), Positives = 193/286 (67%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYFLEVVR GSI+EAA LNVA SAISRQ++ LE L+T LFER GM P AAGELLA Sbjct: 11 LRYFLEVVRCGSISEAALRLNVAGSAISRQVSGLEDRLNTTLFERRKSGMTPTAAGELLA 70 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 A+A R QLE E++ E+ L+GLRRG+V++ T GF+L+F+P I F R + IRFQL Sbjct: 71 AYAFRNQLETEQVTQEIRELQGLRRGDVRIVSTAGFSLDFIPMAIASFRRHYPYIRFQLL 130 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V A VA+++ EG D+GLTF+ P A+I V + +P++AVM H LA + + LS+ Sbjct: 131 VATAEEVARRLNEGESDIGLTFSQVPTANIHVAYRLHSPLVAVMQRHHPLAEKSSLRLSQ 190 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 LA YPL +P + I RRL DACCSR+ +L++P SISALL F G+ S L + Sbjct: 191 LAGYPLGVPVRHILTRRLFDACCSRQGLLIDPAFETTSISALLAFARYCDGVVISTELVV 250 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALI 286 R+ +++ + A+PI +D+N L +E+ +LAGRTLP A AF + LI Sbjct: 251 RQYLKDHDMVAVPITGQDLNGLNIELNTLAGRTLPKAVSAFTDHLI 296 >Q471B1.1 Q471B1_CUPPJ Regulatory protein, LysR:LysR, substrate-binding Length = 321 Score = 281 bits (719), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 147/292 (50%), Positives = 203/292 (69%), Gaps = 1/292 (0%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 VRYFLEVVR GS+ +AA LNVA SA+SRQIA+LE+ELDT LF+R ARG+ PNAAGELLA Sbjct: 26 VRYFLEVVRTGSVKDAALKLNVAPSAVSRQIAKLESELDTLLFDRRARGLVPNAAGELLA 85 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 A A R + ER+ ++ AL+GLR G V+LA EG A EF+P +F QH GIRF L Sbjct: 86 AFAKRSLQDIERVTGDIQALRGLRAGRVRLASVEGIAHEFLPTLAARFREQHTGIRFDLD 145 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V VA++IR+G D+G+T + P+ +I+VE AP+LA+M P H LA ++QVSLS+ Sbjct: 146 VCLQGDVARRIRDGEADIGVTLSGLPEREIEVELRHPAPVLAIMAPDHPLAGQRQVSLSQ 205 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQG-IGFSAALP 239 + YPLA+P K ++R+L+D CSR+++ + +++ + AL+ FV+AG G I F L Sbjct: 206 VIAYPLALPPKGSSLRQLLDTSCSRQDLHYQTVFSSNHLDALVSFVVAGGGAISFYGELS 265 Query: 240 IRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNALIARAAG 291 IR + G +AA+P+RD++MN +EIQ+LA R+LP AARAF+ L+ G Sbjct: 266 IRGRLESGTIAAVPLRDREMNERYIEIQTLAKRSLPPAARAFVQQLVQTITG 317 >C5CLH0.1 C5CLH0_VARPS Transcriptional regulator, LysR family Length = 304 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 139/286 (48%), Positives = 198/286 (69%), Gaps = 1/286 (0%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 VRYFLEVVR GS+ +AA LNVA SA+SRQ+ARLE ELDT LF+R ARGM PNAAGELLA Sbjct: 11 VRYFLEVVRTGSVKDAALKLNVAPSAVSRQVARLERELDTLLFDRHARGMVPNAAGELLA 70 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 AHA R+Q + ER+ E+ L+GLR G V++A TEGFA +F+P I +F +H+GIRF L Sbjct: 71 AHAKRVQQDIERVAGEIQGLRGLRSGRVRVASTEGFAFDFLPTLISRFRAKHEGIRFHLE 130 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 V + +IR+G D+G+T + P+ I++E +PILAVM H LA ++Q+SL + Sbjct: 131 VCPPHEIPGRIRDGEADVGITLSAVPEPGIRIELRHPSPILAVMASDHPLAGQRQLSLRQ 190 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQG-IGFSAALP 239 +A YPL +P + ++R+L+D CSR+ + ++++ +AL+ F AG G I F L Sbjct: 191 VAAYPLGLPPRDSSIRQLLDISCSRQGLQYVQAMSSNHANALVSFAAAGGGTIAFYGELS 250 Query: 240 IRKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNAL 285 IR ++ L A+P++D++MN LE+++LAGR+LPDA +AF+ L Sbjct: 251 IRTQLKSKALVAIPLKDREMNERHLEVETLAGRSLPDAGKAFVRFL 296 >C6BMH7.1 C6BMH7_RALP1 Transcriptional regulator, LysR family Length = 305 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/285 (48%), Positives = 195/285 (68%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYFLEVVR GS+TEAA L+V++SAISRQ+A LE L PLFER +RGMRP+AAGELLA Sbjct: 11 LRYFLEVVRSGSLTEAAARLHVSASAISRQVAMLEELLGVPLFERQSRGMRPSAAGELLA 70 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 AHALR LEAER+ +++ L+GL+RG V++AC++GFA+EFVP I F +H GI+F L Sbjct: 71 AHALRGALEAERVVSDIQGLQGLQRGRVRIACSDGFAIEFVPRAIVAFRERHPGIQFDLR 130 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 M V + + G VD+GLT++ A I+V + QR + A+M P H LA V+L++ Sbjct: 131 AEEPMRVTEAVLRGDVDIGLTYSRAAVHGIRVAYQQRGSVFAIMRPDHPLAKFNSVTLAQ 190 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 + P+P+A+ T+R+L D CS+R ++ EP L ++ LL FV+ G G+G + + + Sbjct: 191 MHPFPIALSGPDNTVRQLFDMGCSQRGLVFEPVLVSNRFDGLLSFVLQGGGLGIAGEITV 250 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNAL 285 R+ V+ G+L A IR++ M +E+Q LAGRTLP+ R FL+ L Sbjct: 251 RERVQRGELHAAEIRERGMRGRTVELQILAGRTLPEVVRVFLDFL 295 >B2UHH7.1 B2UHH7_RALPJ Transcriptional regulator, LysR family Length = 305 Score = 274 bits (700), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 137/285 (48%), Positives = 195/285 (68%) Query: 1 VRYFLEVVRRGSITEAANTLNVASSAISRQIARLEAELDTPLFERVARGMRPNAAGELLA 60 +RYFLEVVR GS+TEAA L+V++SAISRQ+A LE L PLFER +RGMRP+AAGELLA Sbjct: 11 LRYFLEVVRSGSLTEAAARLHVSASAISRQVAMLEELLGVPLFERQSRGMRPSAAGELLA 70 Query: 61 AHALRMQLEAERIGNELAALKGLRRGEVKLACTEGFALEFVPATIEQFCRQHKGIRFQLS 120 AHALR LEAER+ +++ L+GL+RG V++AC++GFA+EFVP I F +H GI+F L Sbjct: 71 AHALRGALEAERVVSDIQGLQGLQRGRVRIACSDGFAIEFVPRAIVAFRERHPGIQFDLR 130 Query: 121 VGNAMHVAQQIREGAVDLGLTFTMAPDADIKVEFAQRAPILAVMHPAHELAHRKQVSLSE 180 M V + + G VD+GLT++ A I+V + QR + A+M P H LA V+L++ Sbjct: 131 AEEPMRVTEAVLRGDVDIGLTYSRAAVHGIRVAYQQRGSVFAIMRPDHPLAKFNSVTLAQ 190 Query: 181 LAPYPLAMPKKTITMRRLIDACCSRRNVLLEPTLAADSISALLCFVMAGQGIGFSAALPI 240 + P+P+A+ T+R+L D CS+R ++ EP L ++ LL FV+ G G+G + + + Sbjct: 191 MHPFPIALSGPDNTVRQLFDMGCSQRGLVFEPVLVSNRFDGLLSFVLQGGGLGIAGEITV 250 Query: 241 RKLVREGKLAALPIRDKDMNTLQLEIQSLAGRTLPDAARAFLNAL 285 R+ V+ G+L A IR++ M +E+Q LAGRTLP+ R FL+ L Sbjct: 251 RERVQRGELHAAEIRERGMRGRTVELQILAGRTLPEVVRVFLDFL 295