BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0071.p (165 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQL9.1 D8IQL9_HERSS Type 4 fimbrial pilin related transmembran... 315 2e-84 F1VWF7.1 F1VWF7_9BURK Type IV fimbrial biogenesis protein FimT 102 2e-20 A6T0S8.1 A6T0S8_JANMA FimT type IV pilus assembly protein 87 8e-16 B5S976.1 B5S976_RALSO Type 4 fimbrial pilin related protein 86 1e-15 E6UX64.1 E6UX64_VARPD Putative type IV pilus assembly protein FimT 86 2e-15 D8NMR1.1 D8NMR1_RALSO Putative type IV pilus assembly protein FimT 86 2e-15 B5SGZ2.1 B5SGZ2_RALSO Type 4 fimbrial pilin related protein 85 3e-15 A3RQD3.1 A3RQD3_RALSO Putative type 4 fimbrial pilin related tra... 85 3e-15 Q8Y1G8.1 Q8Y1G8_RALSO Putative type 4 fimbrial pilin related tra... 82 2e-14 A4G7L7.1 A4G7L7_HERAR Putative Tfp pilus assembly protein FimT 79 3e-13 >D8IQL9.1 D8IQL9_HERSS Type 4 fimbrial pilin related transmembrane protein Length = 157 Score = 315 bits (806), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 156/157 (99%), Positives = 156/157 (99%) Query: 9 MDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHA 68 MDARGFTLIELMVVLLI SLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHA Sbjct: 1 MDARGFTLIELMVVLLIVSLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHA 60 Query: 69 RRAEMRPSDGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQPNGQPLTRGS 128 RRAEMRPSDGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQPNGQPLTRGS Sbjct: 61 RRAEMRPSDGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQPNGQPLTRGS 120 Query: 129 WHFSSDGRSRVVVINFLGRARVCNPARETQCSKAELD 165 WHFSSDGRSRVVVINFLGRARVCNPARETQCSKAELD Sbjct: 121 WHFSSDGRSRVVVINFLGRARVCNPARETQCSKAELD 157 >F1VWF7.1 F1VWF7_9BURK Type IV fimbrial biogenesis protein FimT Length = 189 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 91/188 (48%), Gaps = 29/188 (15%) Query: 1 MDRTAGERMDAR--------GFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQ 52 MD AG R+ G+TLIELM VL I +++LA VPAL + Q++ AA Sbjct: 1 MDAIAGNRLRPNACPACHRTGYTLIELMTVLAILAIVLALAVPALAELIQRQKISAATAD 60 Query: 53 FFHGVSLARAQALRHARRAEMRPSDGLHWERGWQI----------EVGQRVLRREPALPA 102 + L RA+ALR +R ++ P+DG+ W GW I + G+ +L A+ A Sbjct: 61 LLAAIRLTRAEALRRGQRVDLVPADGVEWASGWMIFIDDNGNRRADAGETILHVHDAVAA 120 Query: 103 GISVAHTA---GGEVLGYQPNGQPLTR--------GSWHFSSDGRSRVVVINFLGRARVC 151 G+++ + Y NG+ T G S + R ++INFLGRAR C Sbjct: 121 GLAIKSAMTDRAAPYIAYAANGRTRTNANSQTPQFGHLSLSLGAQQRRIIINFLGRARSC 180 Query: 152 NPARETQC 159 NP E+ C Sbjct: 181 NPLVESAC 188 >A6T0S8.1 A6T0S8_JANMA FimT type IV pilus assembly protein Length = 181 Score = 87.0 bits (214), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 58/169 (34%), Positives = 80/169 (47%), Gaps = 24/169 (14%) Query: 13 GFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHARRAE 72 G TLIEL+V+L I++ LLA +P QRL ++N F V++AR++A+ RR + Sbjct: 15 GLTLIELLVILSISAALLAIAIPGFSSLIQSQRLTTSSNALFMAVNMARSEAIHRGRRVD 74 Query: 73 MRPSDGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQP------------N 120 + P DG W GW + V + +R P I ++ A L P N Sbjct: 75 LVPLDGRQWSNGWLVFVDENNNQR-PDQDELIIHSYRANIRDLRITPRFSDSKVQYIAFN 133 Query: 121 GQPLTR----------GSWHFSSDGRSRVVVINFLGRARVCNPARETQC 159 G +R G W SR +VINFLGR RVCNP R+ C Sbjct: 134 GSGRSRNNAGNQIAQSGHWLLELGPHSRKLVINFLGRPRVCNP-RKAGC 181 >B5S976.1 B5S976_RALSO Type 4 fimbrial pilin related protein Length = 203 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 88/188 (46%), Gaps = 33/188 (17%) Query: 2 DRTAGERMDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLAR 61 D R+ ARGFTL+ELMV + + S++L P+ +QR+++AA+ + AR Sbjct: 4 DNLPHRRLPARGFTLLELMVTIAVISIMLTLVAPSFSDFLRKQRMLSAADSITSAIGQAR 63 Query: 62 AQALRHARRAEMRPSDGLHWERGWQI-EVGQR-----------VLRREPALPAGISVAH- 108 +AL + + P +G W GWQ+ GQ +L + AL G+ V + Sbjct: 64 TRALAQSAYVTVAPING-DWANGWQVFSEGQNPNGIYDPSNDTLLSQYDALTNGLKVTYN 122 Query: 109 ---------TAGGEVLGYQPNG-------QPLTRGSWHFS---SDGRSRVVVINFLGRAR 149 A G L Y PNG QP +++ + G SR+V+IN LGRAR Sbjct: 123 STAYVGGAGNASGNYLIYSPNGYTASKLKQPQVTAAFNVAYQDGTGPSRIVIINALGRAR 182 Query: 150 VCNPARET 157 C+P T Sbjct: 183 TCDPNDAT 190 >E6UX64.1 E6UX64_VARPD Putative type IV pilus assembly protein FimT Length = 191 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 57/168 (33%), Positives = 81/168 (48%), Gaps = 21/168 (12%) Query: 13 GFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHARRAE 72 GFTLIELM ++ I ++L A GVP+ + QRL AA F + AR +A++ A+ E Sbjct: 11 GFTLIELMAIVAIVAVLAAIGVPSFRDMLLNQRLATAAQGFNAALGFARMEAIQRAQGVE 70 Query: 73 MRPSDGLHWERGWQIEVGQ----------RVLRREPALPAGISVAHTAGG---EVLGYQP 119 + G W GW + G + LRR LP G+S+ T GG + L Y Sbjct: 71 VAALAGGDWSEGWVVRTGSDASSSTQRQTQTLRRFDRLPQGVSIDTTLGGGFAQGLRYDG 130 Query: 120 NG-------QPLTRGSWHFSSD-GRSRVVVINFLGRARVCNPARETQC 159 NG + G F ++ GR V+++ GRA+VCNP C Sbjct: 131 NGFSRQTARAGFSAGCLTFKAETGRRASVIVSASGRAKVCNPDVSGDC 178 >D8NMR1.1 D8NMR1_RALSO Putative type IV pilus assembly protein FimT Length = 208 Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 58/184 (31%), Positives = 87/184 (47%), Gaps = 33/184 (17%) Query: 2 DRTAGERMDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLAR 61 D R+ ARGFTLIELMV + + S++L P+ +QR+++AA+ + AR Sbjct: 9 DNLPFRRLPARGFTLIELMVTIAVISIMLVLVAPSFSDFLRKQRMLSAADSITSAIGQAR 68 Query: 62 AQALRHARRAEMRPSDGLHWERGWQI-EVGQR-----------VLRREPALPAGISVAH- 108 +AL + + P +G W GWQ+ GQ +L + L G+ V + Sbjct: 69 TRALAQSAYVTVAPING-DWANGWQVFSEGQNPNGIYDPSSDTLLSQYDPLTNGLKVTYN 127 Query: 109 ---------TAGGEVLGYQPNG-------QPLTRGSWHFS---SDGRSRVVVINFLGRAR 149 A G L Y PNG QP +++ + + G SR+V+IN LGRAR Sbjct: 128 STAYVGGAGNASGNYLIYSPNGYTASKLKQPQVTAAFNVAYQDATGPSRIVIINALGRAR 187 Query: 150 VCNP 153 C+P Sbjct: 188 TCDP 191 >B5SGZ2.1 B5SGZ2_RALSO Type 4 fimbrial pilin related protein Length = 203 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 33/182 (18%) Query: 8 RMDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRH 67 R+ ARGFTL+ELMV + + S++L P+ +QR+++AA+ + AR +AL Sbjct: 10 RLPARGFTLLELMVTIAVISIMLTLVAPSFSDFLRKQRMLSAADSITSAIGQARTRALAQ 69 Query: 68 ARRAEMRPSDGLHWERGWQI-EVGQR-----------VLRREPALPAGISVAH------- 108 + P +G W GWQ+ GQ +L + AL G+ V + Sbjct: 70 NAYVTVAPING-DWANGWQVFSEGQNPNGIYDPSNDTLLSQYDALTNGLKVTYNSTAYVG 128 Query: 109 ---TAGGEVLGYQPNG-------QPLTRGSWHFS---SDGRSRVVVINFLGRARVCNPAR 155 A G L Y PNG QP +++ + G SR+V+IN LGRAR C+P Sbjct: 129 GAGNASGNYLIYSPNGYTASKLKQPQVTAAFNVAYQDGTGPSRIVIINALGRARTCDPND 188 Query: 156 ET 157 T Sbjct: 189 AT 190 >A3RQD3.1 A3RQD3_RALSO Putative type 4 fimbrial pilin related transmembrane protein Length = 203 Score = 85.1 bits (209), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 86/182 (47%), Gaps = 33/182 (18%) Query: 8 RMDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRH 67 R+ ARGFTL+ELMV + + S++L P+ +QR+++AA+ + AR +AL Sbjct: 10 RLPARGFTLLELMVTIAVISIMLTLVAPSFSDFLRKQRMLSAADSITSAIGQARTRALAQ 69 Query: 68 ARRAEMRPSDGLHWERGWQI-EVGQR-----------VLRREPALPAGISVAH------- 108 + P +G W GWQ+ GQ +L + AL G+ V + Sbjct: 70 NAYVTVAPING-DWANGWQVFSEGQNPNGIYDPSNDTLLSQYDALTNGLKVTYNSTAYVG 128 Query: 109 ---TAGGEVLGYQPNG-------QPLTRGSWHFS---SDGRSRVVVINFLGRARVCNPAR 155 A G L Y PNG QP +++ + G SR+V+IN LGRAR C+P Sbjct: 129 GAGNASGNYLIYSPNGYTASKLKQPQVTAAFNVAYQDGTGPSRIVIINALGRARTCDPND 188 Query: 156 ET 157 T Sbjct: 189 AT 190 >Q8Y1G8.1 Q8Y1G8_RALSO Putative type 4 fimbrial pilin related transmembrane protein Length = 203 Score = 82.4 bits (202), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/187 (30%), Positives = 88/187 (47%), Gaps = 33/187 (17%) Query: 2 DRTAGERMDARGFTLIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLAR 61 D + R ARGFTL+ELMV + I S++L P+ +QRL++AA+ + AR Sbjct: 4 DSLSFRRRSARGFTLLELMVTIAIISIMLVLVAPSFSDFLRKQRLLSAADSVASAIGQAR 63 Query: 62 AQALRHARRAEMRPSDGLHWERGWQI-EVGQR-----------VLRREPALPAGISVAH- 108 +AL + + P +G W GW++ GQ +L + AL G+ V + Sbjct: 64 TRALAQSAYVTIAPING-DWANGWRVFSEGQNPDGIYNPSTDTLLNQYDALTNGLKVTYN 122 Query: 109 ---------TAGGEVLGYQPNG-------QPLTRGSWHFS---SDGRSRVVVINFLGRAR 149 A G L Y PNG QP +++ + G +R++++N LGRAR Sbjct: 123 STAYVGGSGNASGNYLIYSPNGYTASKIKQPQVTAAFNVAYQDGTGPARIIIVNALGRAR 182 Query: 150 VCNPARE 156 C+P E Sbjct: 183 TCDPNDE 189 >A4G7L7.1 A4G7L7_HERAR Putative Tfp pilus assembly protein FimT Length = 167 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/164 (36%), Positives = 82/164 (50%), Gaps = 24/164 (14%) Query: 16 LIELMVVLLIASLLLAAGVPALQQAAAEQRLVAAANQFFHGVSLARAQALRHARRAEMRP 75 ++E MV+LLI +LL G+P + QRL AAN V LAR++A+ RR ++ P Sbjct: 1 MVEAMVILLIVGILLGLGIPGFRTMTQNQRLTTAANALLMSVHLARSEAIHRGRRVDLVP 60 Query: 76 S-DGLHWERGWQIEVGQRVLRREPALPAGISVAHTAGGEVLGYQP------------NGQ 122 + DG W +GW I + + +R P + +H A E + P NG Sbjct: 61 AGDGTKWSKGWVIFIDEDNDQR-PDPNETVIYSHGALNEDVRITPSFTDSKVQYIAYNGS 119 Query: 123 PLTR----------GSWHFSSDGRSRVVVINFLGRARVCNPARE 156 TR G+W S +SR VVINFLGRARVCNP +E Sbjct: 120 GRTRTNANSQTSQAGNWLLESGSQSRKVVINFLGRARVCNPQKE 163