BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0064.p (219 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQL2.1 D8IQL2_HERSS Nitrate/nitrite response regulator transcr... 437 e-121 D8P6B4.1 D8P6B4_RALSO Nitrate/nitrite response regulator in two-... 298 3e-79 D8NDK5.1 D8NDK5_RALSO Nitrate/nitrite response regulator in two-... 296 1e-78 Q8XR79.1 Q8XR79_RALSO Probable nitrate/nitrite response regulato... 296 1e-78 Q46R20.1 Q46R20_CUPPJ Regulatory protein, LuxR:Response regulato... 296 1e-78 B5RY90.1 B5RY90_RALSO Nitrate/nitrite response regulator protein 295 3e-78 A3RNJ1.1 A3RNJ1_RALSO Putative uncharacterized protein 295 3e-78 D8N2F8.1 D8N2F8_RALSO Nitrate/nitrite response regulator in two-... 295 4e-78 C6BLA0.1 C6BLA0_RALP1 Two component transcriptional regulator, L... 294 5e-78 B2UJK9.1 B2UJK9_RALPJ Two component transcriptional regulator, L... 294 5e-78 >D8IQL2.1 D8IQL2_HERSS Nitrate/nitrite response regulator transcription regulator protein Length = 219 Score = 437 bits (1124), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/219 (100%), Positives = 219/219 (100%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG Sbjct: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA Sbjct: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL Sbjct: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKSS 219 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKSS Sbjct: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKSS 219 >D8P6B4.1 D8P6B4_RALSO Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) Length = 217 Score = 298 bits (764), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 149/215 (69%), Positives = 178/215 (82%), Gaps = 1/215 (0%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDH LFR+GIRLLLQR PD +VV EA DGL+G+KRA Q RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHALFRTGIRLLLQRQPDFEVVDEASDGLEGIKRAQQHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+VQDLPE AV++L+VSEEAD+L L GARGYL+KNIEAD LV +++AA Sbjct: 61 LSGLETLQLLVQDLPEAAVVVLTVSEEADELKATLREGARGYLVKNIEADALVAGVRKAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVI+ESMTAKLV RA PA A P ++LT+RER + + RG SNKEIAR+L Sbjct: 121 AGEPVIAESMTAKLVAHFRA-PEKPAQPEAVPVERLTSRERDIVQGLVRGDSNKEIARAL 179 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 +VAESTVKIHVQN+L+KL L+SRVQIAVYAVE+GL Sbjct: 180 DVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGL 214 >D8NDK5.1 D8NDK5_RALSO Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) Length = 221 Score = 296 bits (759), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/221 (68%), Positives = 183/221 (82%), Gaps = 3/221 (1%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDHTLFRSGIRLLLQR PD +VV EA DGL+G+K A + RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHTLFRSGIRLLLQRQPDFEVVDEAADGLEGIKLAKRHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+ QDLP+TAV+ML+VSEEAD+L AL +GARGYL+KNIEAD LV ++RAA Sbjct: 61 LSGLETLQLLAQDLPDTAVVMLTVSEEADELKAALRDGARGYLVKNIEADTLVAGVRRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPT---DKLTARERATMVCIARGQSNKEIA 177 AGEPVISESMTAKLV RA A+ A + D+LT RER + +ARG+SNKEIA Sbjct: 121 AGEPVISESMTAKLVAHFRAPEKAAPAAPAAASVSADRLTPRERDIVRGLARGESNKEIA 180 Query: 178 RSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKS 218 R+L+VAESTVKIHVQN+L+KL L+SRVQ+AVYAVEHGL+ + Sbjct: 181 RALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVEHGLNSA 221 >Q8XR79.1 Q8XR79_RALSO Probable nitrate/nitrite response regulator transcription regulator protein Length = 222 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/222 (68%), Positives = 182/222 (81%), Gaps = 4/222 (1%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDHTLFRSGIRLLLQR PD +VV EA DGL+G+K A + RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHTLFRSGIRLLLQRQPDFEVVDEAADGLEGIKLAKRHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+ QDLP+TAV+ML+VSEEAD+L AL +GARGYL+KNIEAD LV ++RAA Sbjct: 61 LSGLETLQLLAQDLPDTAVVMLTVSEEADELKAALRDGARGYLVKNIEADTLVAGVRRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAE----PTDKLTARERATMVCIARGQSNKEI 176 AGEPVISESMTAKLV RA A+ A D+LT RER + +ARG+SNKEI Sbjct: 121 AGEPVISESMTAKLVAHFRAPEKAAPAAPAAAASVSADRLTPREREIVRGLARGESNKEI 180 Query: 177 ARSLEVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKS 218 AR+L+VAESTVKIHVQN+L+KL L+SRVQ+AVYAVEHGL+ + Sbjct: 181 ARALDVAESTVKIHVQNILKKLNLTSRVQVAVYAVEHGLNSA 222 >Q46R20.1 Q46R20_CUPPJ Regulatory protein, LuxR:Response regulator receiver Length = 217 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 149/218 (68%), Positives = 181/218 (83%), Gaps = 2/218 (0%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDHTLFRSGIR LLQR D ++V EA DG++G+KRA Q RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHTLFRSGIRALLQRQADFEIVDEAADGVEGIKRAKQHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLEA+QL+V+DLP++AV++L+VSEEA++L TAL GARGYLLKNIE + L +I+RAA Sbjct: 61 LSGLEALQLLVEDLPDSAVIVLTVSEEAEELATALRRGARGYLLKNIETEALTSAIRRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVISE+MTAKLV Q RA A PA + T KLTARER + + RG+SNKEIAR L Sbjct: 121 AGEPVISEAMTAKLVQQFRAPA--PAPVRQDDTAKLTAREREIVQGLTRGESNKEIARDL 178 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKS 218 VAESTVKIHVQN+L+KL L+SRVQ+AVYAVE GL ++ Sbjct: 179 GVAESTVKIHVQNILKKLNLASRVQVAVYAVERGLTEA 216 >B5RY90.1 B5RY90_RALSO Nitrate/nitrite response regulator protein Length = 217 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 148/215 (68%), Positives = 175/215 (81%), Gaps = 1/215 (0%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDH LFR+GIRLLLQR PD +VV EA DGL+G+KRA Q RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHALFRTGIRLLLQRQPDFEVVDEASDGLEGIKRAQQHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+VQDLPE AV++L+VSEEAD+L L GARGYL+KNIEAD LV +++AA Sbjct: 61 LSGLETLQLLVQDLPEAAVVVLTVSEEADELKATLREGARGYLVKNIEADALVAGVRKAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVI+ESMTAKLV RA P A P ++LT RER + + RG SNKEIAR+L Sbjct: 121 AGEPVIAESMTAKLVAHFRA-PEKPVQPEAVPVERLTLRERDIVQGLVRGDSNKEIARAL 179 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 +VAESTVKIHVQN+L+KL L+SRVQIAVYAVE GL Sbjct: 180 DVAESTVKIHVQNILKKLNLTSRVQIAVYAVEKGL 214 >A3RNJ1.1 A3RNJ1_RALSO Putative uncharacterized protein Length = 217 Score = 295 bits (755), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 148/215 (68%), Positives = 175/215 (81%), Gaps = 1/215 (0%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDH LFR+GIRLLLQR PD +VV EA DGL+G+KRA Q RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHALFRTGIRLLLQRQPDFEVVDEASDGLEGIKRAQQHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+VQDLPE AV++L+VSEEAD+L L GARGYL+KNIEAD LV +++AA Sbjct: 61 LSGLETLQLLVQDLPEAAVVVLTVSEEADELKATLREGARGYLVKNIEADALVAGVRKAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVI+ESMTAKLV RA P A P ++LT RER + + RG SNKEIAR+L Sbjct: 121 AGEPVIAESMTAKLVAHFRA-PEKPVQPEAVPVERLTLRERDIVQGLVRGDSNKEIARAL 179 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGL 215 +VAESTVKIHVQN+L+KL L+SRVQIAVYAVE GL Sbjct: 180 DVAESTVKIHVQNILKKLNLTSRVQIAVYAVEKGL 214 >D8N2F8.1 D8N2F8_RALSO Nitrate/nitrite response regulator in two-component regulatory system with NarX, regulates anaerobic respiration and fermentation (LuxR/UhpA familiy) Length = 217 Score = 295 bits (754), Expect = 4e-78, Method: Compositional matrix adjust. Identities = 149/218 (68%), Positives = 179/218 (82%), Gaps = 1/218 (0%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDH LFR+GIRLLLQR PD +VV EA DGL+G+KRA Q RPDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHALFRTGIRLLLQRQPDFEVVDEASDGLEGIKRAQQHRPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+VQDLP+ AV++L+VSEEAD+L L +GARGYL+KNIEAD LV +++AA Sbjct: 61 LSGLETLQLLVQDLPDAAVVVLTVSEEADELKATLRDGARGYLVKNIEADALVAGVRKAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVI+ESMTAKLV RA A A P ++LTARER + + RG SNKEIAR+L Sbjct: 121 AGEPVIAESMTAKLVAHFRA-PERAAQPEAIPVERLTARERDIVQGLVRGDSNKEIARAL 179 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLDKS 218 +VAESTVKIHVQN+L+KL L+SRVQIAVYAVE+GL S Sbjct: 180 DVAESTVKIHVQNILKKLNLTSRVQIAVYAVENGLTHS 217 >C6BLA0.1 C6BLA0_RALP1 Two component transcriptional regulator, LuxR family Length = 218 Score = 294 bits (753), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 148/216 (68%), Positives = 178/216 (82%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDHTLFRSGIRLLLQR D +VV EA DGL+G+K A + +PDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHTLFRSGIRLLLQRQSDFEVVDEAADGLEGIKLAKRHQPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+VQDLP AV++L+VSEEAD+L AL +GARGYLLKNIEA+ LV I+RAA Sbjct: 61 LSGLETLQLLVQDLPLAAVVVLTVSEEADELKAALRDGARGYLLKNIEAETLVAGIRRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVIS+ MTAKLV RA P A+ D+LT RER + +ARG+SNKEIAR+L Sbjct: 121 AGEPVISDRMTAKLVAHFRAPEKAPPAATTPMPDRLTPREREIVKGLARGESNKEIARTL 180 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLD 216 +VAESTVKIHVQN+L+KL L+SRVQ+AVYAVEHGL+ Sbjct: 181 DVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGLN 216 >B2UJK9.1 B2UJK9_RALPJ Two component transcriptional regulator, LuxR family Length = 218 Score = 294 bits (753), Expect = 5e-78, Method: Compositional matrix adjust. Identities = 148/216 (68%), Positives = 178/216 (82%) Query: 1 MAIRILLVDDHTLFRSGIRLLLQRHPDIDVVGEAVDGLDGVKRALQLRPDVVLMDLNMPG 60 M IRILL+DDHTLFRSGIRLLLQR D +VV EA DGL+G+K A + +PDV+L+DLNMPG Sbjct: 1 MTIRILLIDDHTLFRSGIRLLLQRQSDFEVVDEAADGLEGIKLAKRHQPDVILLDLNMPG 60 Query: 61 LSGLEAMQLIVQDLPETAVLMLSVSEEADDLTTALHNGARGYLLKNIEADYLVQSIKRAA 120 LSGLE +QL+VQDLP AV++L+VSEEAD+L AL +GARGYLLKNIEA+ LV I+RAA Sbjct: 61 LSGLETLQLLVQDLPLAAVVVLTVSEEADELKAALRDGARGYLLKNIEAETLVAGIRRAA 120 Query: 121 AGEPVISESMTAKLVMQLRAGAGNPAASAAEPTDKLTARERATMVCIARGQSNKEIARSL 180 AGEPVIS+ MTAKLV RA P A+ D+LT RER + +ARG+SNKEIAR+L Sbjct: 121 AGEPVISDRMTAKLVAHFRAPEKAPPAATTPMPDRLTPREREIVKGLARGESNKEIARTL 180 Query: 181 EVAESTVKIHVQNLLRKLQLSSRVQIAVYAVEHGLD 216 +VAESTVKIHVQN+L+KL L+SRVQ+AVYAVEHGL+ Sbjct: 181 DVAESTVKIHVQNVLKKLNLTSRVQVAVYAVEHGLN 216