BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0020.p (164 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQH2.1 D8IQH2_HERSS Ribosome maturation factor rimP 327 4e-88 F1W4C6.1 F1W4C6_9BURK Clustered with transcription termination p... 233 1e-59 A6T0Z0.2 RIMP_JANMA Ribosome maturation factor rimP 230 4e-59 A4G7S9.2 RIMP_HERAR Ribosome maturation factor rimP 228 2e-58 C3XAH3.1 C3XAH3_OXAFO Ribosome maturation factor rimP 201 4e-50 C3X4C0.1 C3X4C0_OXAFO Ribosome maturation factor rimP 198 2e-49 C6U0F7.1 C6U0F7_BURPS Ribosome maturation factor rimP 197 4e-49 Q3JSZ1.1 RIMP_BURP1 Ribosome maturation factor rimP 197 4e-49 C5ZEY5.1 C5ZEY5_BURPS Ribosome maturation factor rimP 197 5e-49 C5NLQ0.1 C5NLQ0_BURMA Ribosome maturation factor rimP 197 5e-49 >D8IQH2.1 D8IQH2_HERSS Ribosome maturation factor rimP Length = 164 Score = 327 bits (837), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 163/164 (99%), Positives = 164/164 (100%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL Sbjct: 1 MQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR Sbjct: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG Sbjct: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 >F1W4C6.1 F1W4C6_9BURK Clustered with transcription termination protein NusA Length = 161 Score = 233 bits (593), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/164 (67%), Positives = 137/164 (83%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QLLELIE T+ G+ YELV+FE+A RGL+RV+IDFP PE E ITVEDCEK THQLL Sbjct: 1 MQLLELIEKTVVGMEYELVDFEQAARGLLRVYIDFP--PEQAERGMITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN +YERLEVSSPGLDRPLKK +D++RF EA++KLR+P+PG +NRK+++G+L Sbjct: 59 HVLTVENAVYERLEVSSPGLDRPLKKLADYLRFAGMEAIVKLRMPMPGAANRKSFQGILH 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 PEG+++ LEFE +GS A+L FTLADVDKAHLVP+VDFRSRK Sbjct: 119 APEGDQIKLEFEGKEGS-AMLEFTLADVDKAHLVPKVDFRSRKA 161 >A6T0Z0.2 RIMP_JANMA Ribosome maturation factor rimP Length = 161 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 114/164 (69%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL LIE T+ G+GYELV FE+A RGLVRVFIDF PE + +ITVEDCEK THQLL Sbjct: 1 MQLSALIEKTVVGMGYELVNFEQAARGLVRVFIDF--TPEDADKGAITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN YERLEVSSPGLDRPLKK SD+VRF EA++KLR+P+P +NRK+++G+L+ Sbjct: 59 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRMPMPNAANRKSFQGILQ 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP GE L LEFE NDG A L FTLADVDKAHLVPQV+FRSRK Sbjct: 119 EPVGETLALEFEGNDGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161 >A4G7S9.2 RIMP_HERAR Ribosome maturation factor rimP Length = 161 Score = 228 bits (582), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/164 (68%), Positives = 132/164 (80%), Gaps = 3/164 (1%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL LIE T+ G+GYELV FE+A RGLVRV+IDF PE + SITVEDCEK THQLL Sbjct: 1 MQLSALIEKTVVGMGYELVNFEQAARGLVRVYIDF--TPEDADKGSITVEDCEKVTHQLL 58 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN YERLEVSSPGLDRPLKK SD+VRF EA++KLR+P+P +NRK+++G+L+ Sbjct: 59 HVLTVENANYERLEVSSPGLDRPLKKLSDYVRFAGAEALVKLRLPMPNAANRKSFQGILQ 118 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EP GE L LEFE N+G A L FTLADVDKAHLVPQV+FRSRK Sbjct: 119 EPVGETLALEFEGNEGPAK-LEFTLADVDKAHLVPQVNFRSRKA 161 >C3XAH3.1 C3XAH3_OXAFO Ribosome maturation factor rimP Length = 162 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 102/163 (62%), Positives = 127/163 (77%), Gaps = 3/163 (1%) Query: 3 LLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLLHV 62 L ELIE T+SG GY+LV+ E+A L+RV+IDF PE +I++EDCEK + QL HV Sbjct: 2 LQELIEKTVSGCGYDLVDVERAQGNLLRVYIDFK--PEDAGRGNISLEDCEKVSRQLSHV 59 Query: 63 FTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLREP 122 VE+V Y+RLEVSSPGLDRPLKKF+DFVRFV EA +KLR P+ G SNRKT++G+L P Sbjct: 60 LMVEDVDYDRLEVSSPGLDRPLKKFADFVRFVGMEAHVKLRKPVTGMSNRKTFQGILLAP 119 Query: 123 EGEELVLEFEAND-GSAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EG+EL LEFE D + +VL+FT+AD+DKAHLVPQV+FRSRK Sbjct: 120 EGDELALEFEGKDENNNSVLHFTIADIDKAHLVPQVNFRSRKA 162 >C3X4C0.1 C3X4C0_OXAFO Ribosome maturation factor rimP Length = 182 Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 98/163 (60%), Positives = 127/163 (77%), Gaps = 3/163 (1%) Query: 3 LLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLLHV 62 L EL+E T++G GY+LV+ E+A G++RV+IDF PEA +ITV+DCEK + QL HV Sbjct: 22 LQELVEKTVNGCGYDLVDLERASGGILRVYIDFL--PEASSRGNITVDDCEKVSRQLSHV 79 Query: 63 FTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLREP 122 TVE+V Y+RLEVSSPGLDRPLKK+ DFVRF EA ++LR P+ G NRK+++G+L P Sbjct: 80 LTVEDVDYDRLEVSSPGLDRPLKKWQDFVRFAGMEAHVRLRKPVTGMGNRKSFQGILLPP 139 Query: 123 EGEELVLEFEANDG-SAAVLNFTLADVDKAHLVPQVDFRSRKG 164 EG+EL LEFE ND S++VL+FT+ D+DKA LVPQV+FRSRK Sbjct: 140 EGDELALEFEGNDSESSSVLHFTITDIDKARLVPQVNFRSRKA 182 >C6U0F7.1 C6U0F7_BURPS Ribosome maturation factor rimP Length = 153 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/163 (61%), Positives = 119/163 (73%), Gaps = 11/163 (6%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL ELIE+T++GLGYELV+ E+ RG+V V+ID P IT++DCEK T QL Sbjct: 1 MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPA--------GITIDDCEKVTRQLQ 52 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN+ YERLEVSSPGLDRPLKK +DF RF EAVI L+ PL G RKTY G+L Sbjct: 53 HVLTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDG---RKTYRGILH 109 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRK 163 P GE + LEFE G AA+L+FTLADVDKA L+P VDFRSRK Sbjct: 110 APNGETIGLEFERKKGEAAMLDFTLADVDKARLIPHVDFRSRK 152 >Q3JSZ1.1 RIMP_BURP1 Ribosome maturation factor rimP Length = 153 Score = 197 bits (502), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 101/163 (61%), Positives = 119/163 (73%), Gaps = 11/163 (6%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL ELIE+T++GLGYELV+ E+ RG+V V+ID P IT++DCEK T QL Sbjct: 1 MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPA--------GITIDDCEKVTRQLQ 52 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN+ YERLEVSSPGLDRPLKK +DF RF EAVI L+ PL G RKTY G+L Sbjct: 53 HVLTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDG---RKTYRGILH 109 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRK 163 P GE + LEFE G AA+L+FTLADVDKA L+P VDFRSRK Sbjct: 110 APNGETIGLEFERKKGEAAMLDFTLADVDKARLIPHVDFRSRK 152 >C5ZEY5.1 C5ZEY5_BURPS Ribosome maturation factor rimP Length = 153 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 11/163 (6%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL ELIE+T++GLGYELV+ E+ RG+V V+ID P IT++DCEK T QL Sbjct: 1 MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPA--------GITIDDCEKVTRQLQ 52 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN+ YERLEVSSPGLDRPLKK +DF RF EAVI L+ PL G RKTY G+L Sbjct: 53 HVLTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDG---RKTYRGILH 109 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRK 163 P GE + LEFE G AA+L+FTLAD+DKA L+P VDFRSRK Sbjct: 110 APNGETIGLEFERKKGEAAMLDFTLADIDKARLIPHVDFRSRK 152 >C5NLQ0.1 C5NLQ0_BURMA Ribosome maturation factor rimP Length = 153 Score = 197 bits (501), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 100/163 (61%), Positives = 119/163 (73%), Gaps = 11/163 (6%) Query: 1 LQLLELIESTLSGLGYELVEFEKAPRGLVRVFIDFPFDPEAEEARSITVEDCEKATHQLL 60 +QL ELIE+T++GLGYELV+ E+ RG+V V+ID P IT++DCEK T QL Sbjct: 1 MQLTELIETTVTGLGYELVDLERTGRGMVCVYIDQPA--------GITIDDCEKVTRQLQ 52 Query: 61 HVFTVENVLYERLEVSSPGLDRPLKKFSDFVRFVDCEAVIKLRVPLPGTSNRKTYEGVLR 120 HV TVEN+ YERLEVSSPGLDRPLKK +DF RF EAVI L+ PL G RKTY G+L Sbjct: 53 HVLTVENIDYERLEVSSPGLDRPLKKLADFTRFAGSEAVITLKKPLDG---RKTYRGILH 109 Query: 121 EPEGEELVLEFEANDGSAAVLNFTLADVDKAHLVPQVDFRSRK 163 P GE + LEFE G AA+L+FTLAD+DKA L+P VDFRSRK Sbjct: 110 APNGETIGLEFERKKGEAAMLDFTLADIDKARLIPHVDFRSRK 152