BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0018.p (382 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQH1.1 D8IQH1_HERSS Transcription elongation factor protein 719 0.0 A6T0Y9.1 A6T0Y9_JANMA N utilization substance protein A 671 0.0 A4G7S8.1 A4G7S8_HERAR Transcription elongation protein nusA (N u... 665 0.0 F1W4C7.1 F1W4C7_9BURK Transcription termination protein NusA 662 0.0 C3X4B9.1 C3X4B9_OXAFO Transcription pausing 641 0.0 C3XAH2.1 C3XAH2_OXAFO Transcription elongation protein 629 e-178 C7RU82.1 C7RU82_ACCPU NusA antitermination factor 498 e-139 Q2Y7W1.1 Q2Y7W1_NITMU NusA antitermination factor 489 e-136 E7RX22.1 E7RX22_9BURK N utilization substance A 486 e-135 Q47D93.1 Q47D93_DECAR NusA antitermination factor 486 e-135 >D8IQH1.1 D8IQH1_HERSS Transcription elongation factor protein Length = 519 Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/382 (99%), Positives = 379/382 (99%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS Sbjct: 141 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF Sbjct: 321 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL Sbjct: 381 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSE RARQLIENAFEDVTDDEMKLI Sbjct: 441 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSE---RARQLIENAFEDVTDDEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 DSKYDERAKALQAKAWSAVEGR Sbjct: 498 DSKYDERAKALQAKAWSAVEGR 519 >A6T0Y9.1 A6T0Y9_JANMA N utilization substance protein A Length = 519 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/382 (87%), Positives = 361/382 (94%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDRVRAYILR+DR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRAYILRIDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT WQINIMTAEESADKS ETA IRTLFMEKLDVDQEVADILV+EGF Sbjct: 321 GRGGQNVRLASELTGWQINIMTAEESADKSQLETAAIRTLFMEKLDVDQEVADILVDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI+EML+IESFDE+TVNELRNRARDALVTEAIASEEGLEGMEE L N EG+ Sbjct: 381 ASLEEIAYVPISEMLDIESFDEDTVNELRNRARDALVTEAIASEEGLEGMEEALANLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRV+AGKLGLAG+KTL AF+ LAYDEFGAILALP++ RARQLIE+ F+DVTD+EMKLI Sbjct: 441 DRVMAGKLGLAGIKTLAAFSALAYDEFGAILALPAD---RARQLIEDEFKDVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AKALQAK WS E + Sbjct: 498 DAKYDDHAKALQAKVWSLAEAK 519 >A4G7S8.1 A4G7S8_HERAR Transcription elongation protein nusA (N utilization substance protein A) (L factor) Length = 519 Score = 665 bits (1717), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/382 (87%), Positives = 358/382 (93%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESG+IEARLPRDQ IPKENLRIGDRVRAYILR+DR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGRIEARLPRDQTIPKENLRIGDRVRAYILRIDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQG LEIKSAARD GVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGLLEIKSAARDAGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT WQINIMTAEESADKS ETA R LFMEKLDVDQEVADILV+EGF Sbjct: 321 GRGGQNVRLASELTGWQINIMTAEESADKSQLETAATRILFMEKLDVDQEVADILVDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI EML+IESFDE+TVNELRNRARDALVTEAIASEEG+EGM+E L N EG+ Sbjct: 381 ASLEEIAYVPIGEMLDIESFDEDTVNELRNRARDALVTEAIASEEGMEGMDEALANLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DR++AGKLGLAGVKTL AFAGLAYDEFGAILALP++ RAR LIEN F+DVTD+EMKLI Sbjct: 441 DRIVAGKLGLAGVKTLDAFAGLAYDEFGAILALPTD---RARHLIENEFKDVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AKALQAK WS E + Sbjct: 498 DAKYDDHAKALQAKVWSLAEAK 519 >F1W4C7.1 F1W4C7_9BURK Transcription termination protein NusA Length = 519 Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/382 (86%), Positives = 358/382 (93%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERGDAI+ESGKIEARLPRDQMIPKENLRIGDRVRA+ILRVDR+ARGPQVILS Sbjct: 141 VTGTIKRMERGDAIVESGKIEARLPRDQMIPKENLRIGDRVRAFILRVDRNARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RT+PEFIMKLFELEVPEIEQG L IKSAARD GVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTSPEFIMKLFELEVPEIEQGLLIIKSAARDAGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDEEKHAMDVVVDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLAAELT WQINIMTAEESA KSA ETA IR LFM KLDVDQEVADILV+EGF Sbjct: 321 GRGGQNVRLAAELTNWQINIMTAEESASKSANETAAIRALFMAKLDVDQEVADILVDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPI+EMLEIESFDE+TVNELR RARDALVTEAIASEEGLEGM++ L EG+ Sbjct: 381 ASLEEIAYVPISEMLEIESFDEDTVNELRTRARDALVTEAIASEEGLEGMDDALATMEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DRV AGKLGLAGVKTL AF+GLAYDEFGAILALP++ RARQLI++ F+DVTD+EMKLI Sbjct: 441 DRVTAGKLGLAGVKTLAAFSGLAYDEFGAILALPAD---RARQLIDDEFKDVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+R KALQAKAW+ E + Sbjct: 498 DAKYDDRVKALQAKAWNLAEAK 519 >C3X4B9.1 C3X4B9_OXAFO Transcription pausing Length = 518 Score = 641 bits (1653), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/380 (84%), Positives = 349/380 (91%), Gaps = 3/380 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGT+KRMERGDAI+ESGK+EARLPR+QMIPKENLRIGDRVRAYILRV+R ARGPQVILS Sbjct: 141 VTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRIGDRVRAYILRVERGARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI+KLFELEVPEIEQG LEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANV+SIVVDE+KHAMDV+VDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEDKHAMDVIVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GR GQNVRLA ELT W+INIMTAEESADK+A E A ++ LFMEKLDVD EVADIL+EEGF Sbjct: 321 GRSGQNVRLATELTGWKINIMTAEESADKTALEKAELQKLFMEKLDVDSEVADILIEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVPINEML+IE+FDEETVNE+R RARDAL+TEAI SEEG+ GMEE L EG+ Sbjct: 381 TSLEEIAYVPINEMLDIEAFDEETVNEIRQRARDALITEAIVSEEGMAGMEEALSGLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 R +AGKLGLAGVKTL FAGLAYDEFGAILALP E RARQL+EN F DVTD+EMKLI Sbjct: 441 SRSVAGKLGLAGVKTLERFAGLAYDEFGAILALPVE---RARQLLENEFADVTDEEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVE 380 D+KYD+ AK LQA+AW +E Sbjct: 498 DAKYDDEAKELQARAWKLME 517 >C3XAH2.1 C3XAH2_OXAFO Transcription elongation protein Length = 519 Score = 629 bits (1621), Expect = e-178, Method: Compositional matrix adjust. Identities = 323/382 (84%), Positives = 352/382 (92%), Gaps = 3/382 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGT+KRMERGDAI+ESGK+EARLPR+QMIPKENLR+GDRVRAYILRV+R ARGPQVILS Sbjct: 141 VTGTVKRMERGDAIVESGKVEARLPREQMIPKENLRVGDRVRAYILRVERGARGPQVILS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI+KLFELEVPEIEQG LEIKSAARDPGVRAKIAV+T+DKRIDPIGTCVGMRGSR Sbjct: 201 RTAPEFIVKLFELEVPEIEQGLLEIKSAARDPGVRAKIAVFTSDKRIDPIGTCVGMRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDE+KHAMDV+VDEENLAIAI Sbjct: 261 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEDKHAMDVIVDEENLAIAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GR GQNVRLA ELT W+INIMTAEESADKSA E A ++ LFME+LDVDQEVADIL+EEGF Sbjct: 321 GRSGQNVRLATELTGWKINIMTAEESADKSALEKAELQKLFMERLDVDQEVADILIEEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 + LEEIAYVPI EMLEIE+FDE+TVNE+R RARDAL+TEAIASEEG+ GMEEEL+N EG+ Sbjct: 381 TALEEIAYVPIGEMLEIEAFDEDTVNEIRQRARDALITEAIASEEGMAGMEEELVNLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENAFEDVTDDEMKLI 360 DR +AGKLGLAGVKTL FA LAYDEFGAILALP E RARQL+EN F DVTDDEMKLI Sbjct: 441 DRQVAGKLGLAGVKTLQRFAELAYDEFGAILALPVE---RARQLLENEFADVTDDEMKLI 497 Query: 361 DSKYDERAKALQAKAWSAVEGR 382 D+KYD+ AK LQA AW VE + Sbjct: 498 DAKYDDEAKELQANAWKLVESK 519 >C7RU82.1 C7RU82_ACCPU NusA antitermination factor Length = 490 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/348 (71%), Positives = 295/348 (84%), Gaps = 3/348 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERG+AIIE+GKIEA LPRDQMIP+ENLRIGDRV+AY+LR+DR+ARGPQ+ILS Sbjct: 140 VTGTIKRMERGNAIIETGKIEAVLPRDQMIPRENLRIGDRVKAYLLRIDRAARGPQLILS 199 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFI++LF LEVPE++ G LEIK+AARDPG+RAKIAV + D+RIDPIGTCVGMRG R Sbjct: 200 RTAPEFIIRLFALEVPEVDDGLLEIKAAARDPGMRAKIAVKSNDQRIDPIGTCVGMRGMR 259 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 V AVT EL GERVDIVLWS DPAQFVIGALAPA V+SI+VDEEKH+MDVVVDE+NLAIAI Sbjct: 260 VTAVTNELAGERVDIVLWSADPAQFVIGALAPAEVSSIIVDEEKHSMDVVVDEQNLAIAI 319 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+E+T W IN+MT EES AE A IR LFMEKLDVD+E+A+IL+EEGF Sbjct: 320 GRGGQNVRLASEMTGWTINLMTEEESKTLVEAEAAAIRVLFMEKLDVDEELANILIEEGF 379 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 STLEE+AYVP++EM+EIESFDE TV ELR RAR+ L+T+AI +EE + + E+++N EG+ Sbjct: 380 STLEEVAYVPLHEMIEIESFDEATVQELRERARNVLLTDAIVTEEKIGEVAEDMLNLEGM 439 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLIENA 348 D+VLAGKL +G+KT A LA DE I + + RA+QLI A Sbjct: 440 DKVLAGKLASSGIKTRDDLADLAVDELTEITGIDTP---RAKQLITTA 484 >Q2Y7W1.1 Q2Y7W1_NITMU NusA antitermination factor Length = 495 Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust. Identities = 242/345 (70%), Positives = 292/345 (84%), Gaps = 3/345 (0%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 VTGTIKRMERG+AIIESG++EA LPRDQMIPKENLR+GDRVRAY+ R+DR+ RGPQ+ILS Sbjct: 140 VTGTIKRMERGNAIIESGRVEAVLPRDQMIPKENLRVGDRVRAYLHRIDRTTRGPQLILS 199 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 R PEF++KLFELEVPEIE+G LEIK AARDPG RAKIAV + D+R+DPIGTCVGMRGSR Sbjct: 200 RIVPEFLIKLFELEVPEIEEGLLEIKVAARDPGSRAKIAVKSNDQRVDPIGTCVGMRGSR 259 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVTGEL GERVDI+LWS+DPA FVI ALAPA ++SI+VDEEKH+MD+VVDE NLA AI Sbjct: 260 VQAVTGELAGERVDIILWSDDPATFVINALAPAEISSILVDEEKHSMDIVVDEGNLAQAI 319 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GRGGQNVRLA+ELT W++NIMT EES K+ E +++R LFMEKLDVD+EVADIL +EGF Sbjct: 320 GRGGQNVRLASELTGWELNIMTMEESQAKNEEEFSVLRHLFMEKLDVDEEVADILAQEGF 379 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 +TLEE+AYVP++EM+EIE+FDE+TVNELRNRAR+AL+TEAI SEE +E + E+L+ EG+ Sbjct: 380 TTLEEVAYVPLSEMMEIEAFDEQTVNELRNRARNALLTEAIVSEEKVEHIAEDLLALEGM 439 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERALRARQLI 345 D A +L GV T A LA D+ ++ + +E RARQLI Sbjct: 440 DSQTARELAAKGVSTQEDLADLAVDDLVEMVEMDTE---RARQLI 481 >E7RX22.1 E7RX22_9BURK N utilization substance A Length = 496 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 247/347 (71%), Positives = 293/347 (84%), Gaps = 4/347 (1%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 ++GTIKR++R AIIESG+IEARLPRDQMIPKENLR GDRVRA++ R++R RGPQ+ LS Sbjct: 141 LSGTIKRVDREGAIIESGRIEARLPRDQMIPKENLRNGDRVRAWVSRINREGRGPQLFLS 200 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEFIMKLFELEVPEIEQG L+I++AARDPGVRAKIAV+ D R+DPIGTCVG+RGSR Sbjct: 201 RTAPEFIMKLFELEVPEIEQGLLQIRAAARDPGVRAKIAVHATDSRVDPIGTCVGVRGSR 260 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 VQAVT EL GERVDIVLWSEDPAQFVIGALAPANV+SI+VDEE+H MDVVVDE+NLA+AI Sbjct: 261 VQAVTQELAGERVDIVLWSEDPAQFVIGALAPANVSSILVDEERHVMDVVVDEDNLALAI 320 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 G GG+NVRLA+ELT WQIN+M+AEES K E A IR +FME+LDVD EVADIL++EGF Sbjct: 321 GTGGRNVRLASELTGWQINLMSAEESEKKQEDERAAIRGVFMERLDVDAEVADILIDEGF 380 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 ++LEEIAYVP+NEMLEIE+FDE+TVNELR RAR+AL+T+AIA+EE L ++L++ EG+ Sbjct: 381 TSLEEIAYVPLNEMLEIEAFDEDTVNELRERARNALLTQAIATEEKLNETADDLLSLEGM 440 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA----LRARQ 343 DR LA KL A V+T A LA DE I L ERA L+AR+ Sbjct: 441 DRELAVKLAEANVRTRDDLAELAVDELIEITELDEERAKALILKARE 487 >Q47D93.1 Q47D93_DECAR NusA antitermination factor Length = 490 Score = 486 bits (1252), Expect = e-135, Method: Compositional matrix adjust. Identities = 243/346 (70%), Positives = 288/346 (83%), Gaps = 4/346 (1%) Query: 1 VTGTIKRMERGDAIIESGKIEARLPRDQMIPKENLRIGDRVRAYILRVDRSARGPQVILS 60 V+GTIKRMERG+AIIE+GKIEA LPRDQMIPKENLR+GDRVRAY+LR+DR+ARGPQ+ILS Sbjct: 140 VSGTIKRMERGNAIIEAGKIEAMLPRDQMIPKENLRVGDRVRAYLLRIDRNARGPQIILS 199 Query: 61 RTAPEFIMKLFELEVPEIEQGSLEIKSAARDPGVRAKIAVYTADKRIDPIGTCVGMRGSR 120 RTAPEF++KLF++EVPEI G +E+K+ ARDPG+RAKIAV + D R+DPIGTCVG+RGSR Sbjct: 200 RTAPEFVIKLFDMEVPEISDGLMELKACARDPGLRAKIAVKSNDPRVDPIGTCVGLRGSR 259 Query: 121 VQAVTGELGGERVDIVLWSEDPAQFVIGALAPANVTSIVVDEEKHAMDVVVDEENLAIAI 180 V AV E+GGE +DIVLWS DPAQFVIGAL+PA V+SIVVDEEKHAMDVVVDE+NLAIAI Sbjct: 260 VTAVRNEIGGENIDIVLWSADPAQFVIGALSPAEVSSIVVDEEKHAMDVVVDEDNLAIAI 319 Query: 181 GRGGQNVRLAAELTRWQINIMTAEESADKSAAETALIRTLFMEKLDVDQEVADILVEEGF 240 GR GQNVRLA+ELT W IN+MT +ESA KS AE A R +FMEKLD+D+E+AD+L+EEGF Sbjct: 320 GRNGQNVRLASELTGWTINLMTQDESAKKSEAEFAETRVVFMEKLDIDEELADLLIEEGF 379 Query: 241 STLEEIAYVPINEMLEIESFDEETVNELRNRARDALVTEAIASEEGLEGMEEELINFEGL 300 STLEE+AYVP+ EMLEIE DEE VNELRNRAR+ L+TEAIA+EE LE + E+LI EG+ Sbjct: 380 STLEEVAYVPLAEMLEIEGLDEEIVNELRNRARNVLLTEAIATEEKLESVSEDLIGLEGM 439 Query: 301 DRVLAGKLGLAGVKTLPAFAGLAYDEFGAILALPSERA----LRAR 342 + LA KL VKT A LA DE + + ERA L+AR Sbjct: 440 SKELAAKLAGHDVKTRDDLAELAVDELTEMTGIDDERAKDLILKAR 485