BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0021.0016.p (130 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQG9.1 D8IQG9_HERSS Ribosome-binding factor A 264 3e-69 A4G7S6.1 RBFA_HERAR Ribosome-binding factor A 231 2e-59 A6T0Y7.1 RBFA_JANMA Ribosome-binding factor A 229 1e-58 F1VXY6.1 F1VXY6_9BURK Ribosome-binding factor A 215 2e-54 C3XAH0.1 C3XAH0_OXAFO Ribosome-binding factor A 181 4e-44 C3X4B7.1 C3X4B7_OXAFO Ribosome-binding factor A 179 1e-43 A2SH39.1 RBFA_METPP Ribosome-binding factor A 151 4e-35 E1TAL7.1 E1TAL7_BURSG Ribosome-binding factor A 145 1e-33 E8YKZ3.1 E8YKZ3_9BURK Ribosome-binding factor A 145 1e-33 B1GB55.1 B1GB55_9BURK Ribosome-binding factor A 144 4e-33 >D8IQG9.1 D8IQG9_HERSS Ribosome-binding factor A Length = 130 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 129/130 (99%), Positives = 129/130 (99%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL Sbjct: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 VDN EAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA Sbjct: 61 VDNPEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 Query: 121 TRAKDSDDEA 130 TRAKDSDDEA Sbjct: 121 TRAKDSDDEA 130 >A4G7S6.1 RBFA_HERAR Ribosome-binding factor A Length = 128 Score = 231 bits (590), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/128 (85%), Positives = 119/128 (92%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 MAKHSKSIPGRGLRVADQIQRDLSE++AFELKDPRVGMITITEVQVTPDYAHAKVFFT L Sbjct: 1 MAKHSKSIPGRGLRVADQIQRDLSEIVAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 DN + IKNT++GL A GY+R QLGRRL+IHTLPELHFVHD STARGIEMS+LIDEANA Sbjct: 61 SDNKDEIKNTVSGLSAASGYIRGQLGRRLSIHTLPELHFVHDTSTARGIEMSKLIDEANA 120 Query: 121 TRAKDSDD 128 TRAKD++D Sbjct: 121 TRAKDAED 128 >A6T0Y7.1 RBFA_JANMA Ribosome-binding factor A Length = 128 Score = 229 bits (583), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/128 (85%), Positives = 118/128 (92%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 MAKHSKSIPGRGLRVADQIQRDLSE+IAFELKDPRVGMITITEVQVTPDYAHAKVFFT L Sbjct: 1 MAKHSKSIPGRGLRVADQIQRDLSEIIAFELKDPRVGMITITEVQVTPDYAHAKVFFTML 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 D + IKNT++GL A GY+R QLGRRLTIHTLPELHFVHD STARGIEMS+LIDEANA Sbjct: 61 SDKKDDIKNTVSGLTAASGYIRGQLGRRLTIHTLPELHFVHDTSTARGIEMSKLIDEANA 120 Query: 121 TRAKDSDD 128 +RAKD++D Sbjct: 121 SRAKDAED 128 >F1VXY6.1 F1VXY6_9BURK Ribosome-binding factor A Length = 129 Score = 215 bits (547), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/130 (77%), Positives = 119/130 (91%), Gaps = 1/130 (0%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 MAKHSK+IP RG+RVADQIQRDL+E++A+ELKDPRVGMIT+TEVQ+TPDYAHAKVFFT L Sbjct: 1 MAKHSKTIPVRGIRVADQIQRDLAEIVAYELKDPRVGMITVTEVQLTPDYAHAKVFFTML 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 D+ EAIKNT+ GL+ A G++R QLGRRL +HTLPELHFVHD STARG+E+S+LIDEANA Sbjct: 61 SDDKEAIKNTVTGLKIASGFIRGQLGRRLHVHTLPELHFVHDTSTARGMELSKLIDEANA 120 Query: 121 TRAKDSDDEA 130 TRAKD DD+A Sbjct: 121 TRAKD-DDQA 129 >C3XAH0.1 C3XAH0_OXAFO Ribosome-binding factor A Length = 129 Score = 181 bits (458), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 86/125 (68%), Positives = 104/125 (83%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 MA+HSKSIPGR +RVADQIQRDLS++I ELKDP VGMITIT+V+VTPDYAHAKVFFT L Sbjct: 1 MARHSKSIPGRSVRVADQIQRDLSDIIFSELKDPHVGMITITDVKVTPDYAHAKVFFTML 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 D+ + +K TL L +A G+LR QLG+RL IHTLP+L FV+DNS A+G+ +S LID AN+ Sbjct: 61 DDSPDKVKTTLDSLHRASGFLRMQLGKRLHIHTLPQLSFVYDNSIAQGMALSHLIDVANS 120 Query: 121 TRAKD 125 RAKD Sbjct: 121 ERAKD 125 >C3X4B7.1 C3X4B7_OXAFO Ribosome-binding factor A Length = 129 Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 85/127 (66%), Positives = 103/127 (81%) Query: 1 MAKHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTL 60 MA+HSKSIPGR LRVADQIQRDLS++I ELKDP VGM+TITEV+VTPDYA+A+V+FT L Sbjct: 1 MARHSKSIPGRSLRVADQIQRDLSDIIFSELKDPNVGMVTITEVKVTPDYANARVYFTML 60 Query: 61 VDNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANA 120 D E +K TL L+ A G++R QLG+RL IHTLP+L F++DNS A G+ +S LID ANA Sbjct: 61 DDKPETVKKTLDSLQHASGFIRMQLGKRLHIHTLPQLAFIYDNSIAEGVALSHLIDVANA 120 Query: 121 TRAKDSD 127 RAKD D Sbjct: 121 ERAKDGD 127 >A2SH39.1 RBFA_METPP Ribosome-binding factor A Length = 130 Score = 151 bits (381), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 77/128 (60%), Positives = 96/128 (75%), Gaps = 6/128 (4%) Query: 3 KHSKSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLV- 61 KH ++IP RGLRVADQIQRD++ LI ELKDPR+GM+TI V+VTPDYAHAKVFF+ L+ Sbjct: 2 KHKRAIPNRGLRVADQIQRDVAGLIR-ELKDPRIGMVTIQAVEVTPDYAHAKVFFSVLIG 60 Query: 62 DNAEAIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANAT 121 D AE A L +A GYLR L +RL IHT+P LHF D +T R +++ LI +ANAT Sbjct: 61 DPAECA----AALNEAAGYLRNSLFKRLQIHTVPTLHFQFDRTTERAADLNALIHQANAT 116 Query: 122 RAKDSDDE 129 RAKD+DD+ Sbjct: 117 RAKDADDQ 124 >E1TAL7.1 E1TAL7_BURSG Ribosome-binding factor A Length = 121 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/120 (59%), Positives = 92/120 (76%), Gaps = 4/120 (3%) Query: 6 KSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNAE 65 +S P R +++ADQIQRDLSEL+ E+KDPR+G++TI V++TPDYAHAKV+FTTL + + Sbjct: 5 RSSPNRNVQIADQIQRDLSELLR-EVKDPRIGIVTIQSVELTPDYAHAKVYFTTLTGDPQ 63 Query: 66 AIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANATRAKD 125 TLA L A G+L QL +RL IHT+P LHF +D + R +EMSRLIDEANA+RAKD Sbjct: 64 ---QTLAALTHAAGHLHNQLFKRLHIHTVPTLHFHYDKTIERAVEMSRLIDEANASRAKD 120 >E8YKZ3.1 E8YKZ3_9BURK Ribosome-binding factor A Length = 121 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 71/120 (59%), Positives = 92/120 (76%), Gaps = 4/120 (3%) Query: 6 KSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNAE 65 +S P R +++ADQIQRDLSEL+ E+KDPR+G++TI V++TPDYAHAKV+FTTL + + Sbjct: 5 RSSPNRNVQIADQIQRDLSELLR-EVKDPRIGIVTIQSVELTPDYAHAKVYFTTLTGDPQ 63 Query: 66 AIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANATRAKD 125 TLA L A G+L QL +RL IHT+P LHF +D + R +EMSRLIDEANA+RAKD Sbjct: 64 ---QTLAALTHAAGHLHNQLFKRLHIHTVPTLHFHYDKTIERAVEMSRLIDEANASRAKD 120 >B1GB55.1 B1GB55_9BURK Ribosome-binding factor A Length = 121 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 70/120 (58%), Positives = 92/120 (76%), Gaps = 4/120 (3%) Query: 6 KSIPGRGLRVADQIQRDLSELIAFELKDPRVGMITITEVQVTPDYAHAKVFFTTLVDNAE 65 +S P R +++ADQIQRDLSEL+ E+KDPR+G++TI V++TPDYAHAKV+FTTL + + Sbjct: 5 RSSPNRNVQIADQIQRDLSELLR-EVKDPRIGIVTIQSVELTPDYAHAKVYFTTLTGDPQ 63 Query: 66 AIKNTLAGLRKAGGYLRTQLGRRLTIHTLPELHFVHDNSTARGIEMSRLIDEANATRAKD 125 TLA L A G+L QL +RL IHT+P LHF +D + R +EMSRLIDEANA+RAK+ Sbjct: 64 ---QTLAALTHAAGHLHNQLFKRLHIHTVPTLHFHYDKTIERAVEMSRLIDEANASRAKE 120