BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0381.p (258 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1Q7.1 D8J1Q7_HERSS ABC-type amino acid transport/signal trans... 525 e-147 D8NDC4.1 D8NDC4_RALSO Putative amino acid-binding periplasmic (P... 346 2e-93 Q8XTY5.1 Q8XTY5_RALSO Probable amino acid-binding periplasmic (P... 343 1e-92 D8NUF2.1 D8NUF2_RALSO Putative amino acid-binding periplasmic (P... 341 5e-92 B5SER6.1 B5SER6_RALSO Amino acid-binding periplasmic (Pbp) abc t... 340 9e-92 B5RXC0.1 B5RXC0_RALSO Amino acid-binding periplasmic protein (Pbp) 340 9e-92 A3RQA5.1 A3RQA5_RALSO Periplasmic amino acid binding proteins 340 9e-92 D8NK55.1 D8NK55_RALSO Putative amino acid-binding periplasmic (P... 339 3e-91 D5NDL0.1 D5NDL0_9BURK Extracellular solute-binding protein family 3 332 3e-89 E8TRN0.1 E8TRN0_ALIDB Extracellular solute-binding protein family 3 330 8e-89 >D8J1Q7.1 D8J1Q7_HERSS ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein Length = 258 Score = 525 bits (1353), Expect = e-147, Method: Compositional matrix adjust. Identities = 257/258 (99%), Positives = 258/258 (100%) Query: 1 MKPFHCLFKHLVGSVALAAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMM 60 MKPFHCLFKHLVGSVALAAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMM Sbjct: 1 MKPFHCLFKHLVGSVALAAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMM 60 Query: 61 VDTVTAVGNKAGFAVNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSY 120 VDTVTAVGNKAGF+VNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSY Sbjct: 61 VDTVTAVGNKAGFSVNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSY 120 Query: 121 GEGLFVNAQDGKSYKNLDDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVA 180 GEGLFVNAQDGKSYKNLDDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVA Sbjct: 121 GEGLFVNAQDGKSYKNLDDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVA 180 Query: 181 LGRIKAGFGDRPIVAYQLAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIA 240 LGRIKAGFGDRPIVAYQLAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIA Sbjct: 181 LGRIKAGFGDRPIVAYQLAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIA 240 Query: 241 ELKADGTLARIVEQWKLN 258 ELKADGTLARIVEQWKLN Sbjct: 241 ELKADGTLARIVEQWKLN 258 >D8NDC4.1 D8NDC4_RALSO Putative amino acid-binding periplasmic (Pbp) abc transporter protein Length = 255 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 171/245 (69%), Positives = 204/245 (83%), Gaps = 7/245 (2%) Query: 11 LVGSVALAAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNK 70 ++GS +LA A G APA YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG Sbjct: 16 MLGSASLAWAQG--GGAPA-----YNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKA 68 Query: 71 AGFAVNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQD 130 GF+VN+QQT FAALIPSLT NKIDII+AAMLKT ARAQ+V+FSDPVYSYGEGL V A D Sbjct: 69 GGFSVNVQQTVFAALIPSLTSNKIDIISAAMLKTPARAQVVEFSDPVYSYGEGLLVKADD 128 Query: 131 GKSYKNLDDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGD 190 K+Y +LDDLKGE+VGAQVGTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD Sbjct: 129 AKTYASLDDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGD 188 Query: 191 RPIVAYQLAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLAR 250 +PI+AYQ+ Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA Sbjct: 189 QPILAYQIRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAA 248 Query: 251 IVEQW 255 IV++W Sbjct: 249 IVQKW 253 >Q8XTY5.1 Q8XTY5_RALSO Probable amino acid-binding periplasmic (Pbp) abc transporter protein Length = 255 Score = 343 bits (880), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 170/245 (69%), Positives = 204/245 (83%), Gaps = 7/245 (2%) Query: 11 LVGSVALAAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNK 70 ++GS +LA A G AP +YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG Sbjct: 16 MLGSASLAWAQG--GGAP-----TYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKA 68 Query: 71 AGFAVNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQD 130 GF+VN+QQT FAALIPSLT +KIDII+AAMLKT ARAQ+VDFSDPVYSYGEGL V A D Sbjct: 69 GGFSVNVQQTVFAALIPSLTSSKIDIISAAMLKTPARAQVVDFSDPVYSYGEGLRVKADD 128 Query: 131 GKSYKNLDDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGD 190 K+Y +LDDLKGE+VGAQVGTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD Sbjct: 129 AKTYASLDDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGD 188 Query: 191 RPIVAYQLAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLAR 250 +PI+AYQ+ Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA Sbjct: 189 QPILAYQIRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAA 248 Query: 251 IVEQW 255 IV++W Sbjct: 249 IVQKW 253 >D8NUF2.1 D8NUF2_RALSO Putative amino acid-binding periplasmic (Pbp) abc transporter protein Length = 255 Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 169/245 (68%), Positives = 201/245 (82%), Gaps = 5/245 (2%) Query: 18 AAAVATLGSAP-AMAQA----SYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAG 72 A + LGSA A AQ +YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG G Sbjct: 11 ALVLCMLGSASLAWAQGGGTPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAGG 70 Query: 73 FAVNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGK 132 F VN+QQT FAALIPSLT NKIDII+AAMLKT ARAQ+VDFSDPVYSYGEGL V D + Sbjct: 71 FNVNVQQTVFAALIPSLTSNKIDIISAAMLKTPARAQVVDFSDPVYSYGEGLLVKTDDAR 130 Query: 133 SYKNLDDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRP 192 +Y +LDDLKGE+VGAQVGTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD+P Sbjct: 131 AYASLDDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQP 190 Query: 193 IVAYQLAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIV 252 I+AYQ+ Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA IV Sbjct: 191 ILAYQIRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAAIV 250 Query: 253 EQWKL 257 ++W + Sbjct: 251 QKWGI 255 >B5SER6.1 B5SER6_RALSO Amino acid-binding periplasmic (Pbp) abc transporter protein Length = 258 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 196/238 (82%) Query: 18 AAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFAVNI 77 A++A + A +YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG GF VN+ Sbjct: 19 CASLAWAQGGTSSAAPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAGGFNVNV 78 Query: 78 QQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNL 137 QQT FAALIPSLT NKIDII+AAMLKT RAQ+VDFSDPVYSYGEGL V D K+Y +L Sbjct: 79 QQTVFAALIPSLTSNKIDIISAAMLKTPTRAQVVDFSDPVYSYGEGLLVKTDDAKAYASL 138 Query: 138 DDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQ 197 DDLKGE+VGAQVGTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD+PI+AYQ Sbjct: 139 DDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQPILAYQ 198 Query: 198 LAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQW 255 + Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA IV++W Sbjct: 199 IRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAAIVQKW 256 >B5RXC0.1 B5RXC0_RALSO Amino acid-binding periplasmic protein (Pbp) Length = 258 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 196/238 (82%) Query: 18 AAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFAVNI 77 A++A + A +YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG GF VN+ Sbjct: 19 CASLAWAQGGTSSAAPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAGGFNVNV 78 Query: 78 QQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNL 137 QQT FAALIPSLT NKIDII+AAMLKT RAQ+VDFSDPVYSYGEGL V D K+Y +L Sbjct: 79 QQTVFAALIPSLTSNKIDIISAAMLKTPTRAQVVDFSDPVYSYGEGLLVKTDDAKAYASL 138 Query: 138 DDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQ 197 DDLKGE+VGAQVGTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD+PI+AYQ Sbjct: 139 DDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQPILAYQ 198 Query: 198 LAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQW 255 + Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA IV++W Sbjct: 199 IRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAAIVQKW 256 >A3RQA5.1 A3RQA5_RALSO Periplasmic amino acid binding proteins Length = 258 Score = 340 bits (873), Expect = 9e-92, Method: Compositional matrix adjust. Identities = 164/238 (68%), Positives = 196/238 (82%) Query: 18 AAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFAVNI 77 A++A + A +YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG GF VN+ Sbjct: 19 CASLAWAQGGTSSAAPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAGGFNVNV 78 Query: 78 QQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNL 137 QQT FAALIPSLT NKIDII+AAMLKT RAQ+VDFSDPVYSYGEGL V D K+Y +L Sbjct: 79 QQTVFAALIPSLTSNKIDIISAAMLKTPTRAQVVDFSDPVYSYGEGLLVKTDDAKAYASL 138 Query: 138 DDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQ 197 DDLKGE+VGAQVGTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD+PI+AYQ Sbjct: 139 DDLKGEVVGAQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQPILAYQ 198 Query: 198 LAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQW 255 + Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA IV++W Sbjct: 199 IRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAAIVQKW 256 >D8NK55.1 D8NK55_RALSO Putative amino acid-binding periplasmic (Pbp) abc transporter protein Length = 258 Score = 339 bits (869), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 163/238 (68%), Positives = 196/238 (82%) Query: 18 AAAVATLGSAPAMAQASYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFAVNI 77 A++A + A +YNVGAT+TGVPFTFLD+K+N +QGMMVDTVTAVG GF VN+ Sbjct: 19 CASLAWAQGGTSSAAPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAGGFNVNV 78 Query: 78 QQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNL 137 QQT FAALIPSLT NKIDII+AAMLKT RAQ+VDFSDPVYSYGEGL V D K+Y +L Sbjct: 79 QQTVFAALIPSLTSNKIDIISAAMLKTPTRAQVVDFSDPVYSYGEGLLVKTDDAKAYASL 138 Query: 138 DDLKGEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQ 197 DDLKGE+VGAQ+GTVF+D LNKKG FKEV++YDSVADM RD+ALGRIKAG GD+PI+AYQ Sbjct: 139 DDLKGEVVGAQMGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQPILAYQ 198 Query: 198 LAQGANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQW 255 + Q V+LV Y+P +GDVCLV+RKGD +L+ R+NKAIA++KADGTLA IV++W Sbjct: 199 IRQNTFQGVKLVSSYKPVNVGDVCLVVRKGDAELLGRINKAIAKIKADGTLAAIVQKW 256 >D5NDL0.1 D5NDL0_9BURK Extracellular solute-binding protein family 3 Length = 254 Score = 332 bits (851), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 160/237 (67%), Positives = 191/237 (80%), Gaps = 2/237 (0%) Query: 24 LGSAPAMAQA--SYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFAVNIQQTP 81 L APA++ A +Y VGAT+TGVPFTFLD+KTN +QG++VD +TA G AGF V I+QT Sbjct: 18 LAGAPALSVAATTYEVGATATGVPFTFLDVKTNSIQGLLVDAITATGKAAGFDVKIEQTT 77 Query: 82 FAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNLDDLK 141 F+ALIPSLT KIDII+AAMLKT AR QIVDFSD VYSYGEGL V A D Y ++DDLK Sbjct: 78 FSALIPSLTTKKIDIISAAMLKTPAREQIVDFSDTVYSYGEGLIVRADDKGQYTSMDDLK 137 Query: 142 GEIVGAQVGTVFVDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQLAQG 201 GE+VGAQVGT FVDALNKKG FKEV+TYDSVAD+MRDVALGRIKAGFGD PI+AYQL Sbjct: 138 GEVVGAQVGTAFVDALNKKGIFKEVRTYDSVADIMRDVALGRIKAGFGDHPILAYQLQHN 197 Query: 202 ANPQVRLVKEYQPTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQWKLN 258 NPQ+RLV YQP++ G VC V+RKGD +E+LN I ++KADGTL +IV++W++ Sbjct: 198 PNPQLRLVSGYQPSVKGQVCFVVRKGDTATLEQLNAGIRKIKADGTLTQIVKKWQVE 254 >E8TRN0.1 E8TRN0_ALIDB Extracellular solute-binding protein family 3 Length = 256 Score = 330 bits (847), Expect = 8e-89, Method: Compositional matrix adjust. Identities = 156/222 (70%), Positives = 186/222 (83%) Query: 34 SYNVGATSTGVPFTFLDIKTNKLQGMMVDTVTAVGNKAGFAVNIQQTPFAALIPSLTGNK 93 +YNVGAT+TG+PFTFLD+KTN +QGMMVDT+ AV GF VN+QQT F+ALIPSLT NK Sbjct: 33 TYNVGATATGIPFTFLDVKTNSIQGMMVDTIQAVAKAGGFQVNVQQTVFSALIPSLTSNK 92 Query: 94 IDIIAAAMLKTEARAQIVDFSDPVYSYGEGLFVNAQDGKSYKNLDDLKGEIVGAQVGTVF 153 IDI++AAMLKT R Q+VDFSDPVYSYGEGL V A D K+Y LDDLKGEIVGAQVGTVF Sbjct: 93 IDIVSAAMLKTPTRQQVVDFSDPVYSYGEGLIVKADDAKAYATLDDLKGEIVGAQVGTVF 152 Query: 154 VDALNKKGGFKEVKTYDSVADMMRDVALGRIKAGFGDRPIVAYQLAQGANPQVRLVKEYQ 213 +D L KKG FKEV++YDSVADM RD+ALGRIKAG GD+PI+AYQ+ Q V+L + Y+ Sbjct: 153 LDMLQKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQPIIAYQIRQNTFQGVKLAEGYK 212 Query: 214 PTLMGDVCLVIRKGDPKLMERLNKAIAELKADGTLARIVEQW 255 P+ +GDVCLV+RKGD +ERLNKAIA +KADGTLA+IV++W Sbjct: 213 PSNVGDVCLVVRKGDTATLERLNKAIAAIKADGTLAQIVKKW 254