BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0356.p (224 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1T0.1 D8J1T0_HERSS DNA repair RadC-like protein 455 e-126 A4G7V9.1 Y2468_HERAR UPF0758 protein HEAR2468 276 2e-72 A6T144.1 Y2551_JANMA UPF0758 protein mma_2551 263 1e-68 B0LFR7.1 B0LFR7_9BACT DNA repair protein 256 1e-66 D5CP50.1 D5CP50_SIDLE DNA repair protein RadC 253 2e-65 D8NZN2.1 D8NZN2_RALSO DNA repair protein radC homolog, associate... 251 4e-65 Q1H4K1.1 Y315_METFK UPF0758 protein Mfla_0315 251 5e-65 Q8XWN0.1 Y2444_RALSO UPF0758 protein RSc2444 251 7e-65 D8N8A0.1 D8N8A0_RALSO DNA repair protein radC homolog, associate... 250 1e-64 B2UAP0.1 Y2712_RALPJ UPF0758 protein Rpic_2712 248 4e-64 >D8J1T0.1 D8J1T0_HERSS DNA repair RadC-like protein Length = 224 Score = 455 bits (1171), Expect = e-126, Method: Compositional matrix adjust. Identities = 223/224 (99%), Positives = 223/224 (99%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV Sbjct: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMR RELLNSTRAVGDYLKLMLAHR Sbjct: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRQRELLNSTRAVGDYLKLMLAHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP Sbjct: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM Sbjct: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 >A4G7V9.1 Y2468_HERAR UPF0758 protein HEAR2468 Length = 224 Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 131/224 (58%), Positives = 173/224 (77%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDWP+EQRPRER+ +HG A LSDAELLA+FLRVG+ GK+AV+L + + FGSL+G+ Sbjct: 1 MAITDWPEEQRPRERLIRHGAAILSDAELLAVFLRVGVTGKSAVDLGRDMVAHFGSLNGL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A D GLGPA QL+AVLE++RR++ +++ LNS +AV YL+L+L+ R Sbjct: 61 FSATLNDFSKINGLGPAKYAQLQAVLELARRSLCEELQAGVALNSPQAVKQYLQLLLSGR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E FV LFLDV+N+LI +E+F+GTLT ++VYPRE++KAAL HNAASVILAHNHPSG P Sbjct: 121 AYESFVILFLDVKNRLIVCDEMFRGTLTHTSVYPREIVKAALGHNAASVILAHNHPSGTP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D LT AL +AL ++D+R+LDHFVVAG ++YSFA+ G++ Sbjct: 181 EPSAADQTLTQALKQALMLIDVRVLDHFVVAGKQVYSFAEQGQL 224 >A6T144.1 Y2551_JANMA UPF0758 protein mma_2551 Length = 224 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 166/224 (74%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I+DWP++ RPRER+ +HG A L+DAELLAIFLR+G+ GK+AV+LA + + FGSL + Sbjct: 1 MAISDWPEQDRPRERLIKHGAAILTDAELLAIFLRLGVAGKSAVDLARDMLNHFGSLHAL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A D GLGPA QL+AVLE++RR++ ++++ LNS +AV YL+L+L + Sbjct: 61 FSASLDDFSQLNGLGPAKYAQLQAVLELTRRSLSEELQIGISLNSPQAVKKYLQLLLGGK 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E F LFLDV+N+LI EELF+GTLT ++VYPRE++K AL HNAASVILAHNHPSG Sbjct: 121 PYEAFAVLFLDVKNRLIACEELFRGTLTHTSVYPREIVKEALTHNAASVILAHNHPSGSS 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D LT AL +AL ++D+R+LDHFVV G +YSFA+HG + Sbjct: 181 EPSAADHSLTQALKQALALIDVRVLDHFVVGGKNVYSFAEHGHL 224 >B0LFR7.1 B0LFR7_9BACT DNA repair protein Length = 224 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 169/224 (75%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +QRPRER+ G +ALSD ELLA+FLRVGI G++AVEL + I++FGS+ G+ Sbjct: 1 MGIKDWPVQQRPRERLISEGASALSDPELLALFLRVGIKGRSAVELGRDLIEQFGSIQGL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A +G+GPA +L+AV+E+++RAI QM+ E L S V YL++ L + Sbjct: 61 FAASLAQFSAVRGMGPAKFAELQAVMELAQRAICEQMQAGEALGSPELVRQYLRMTLGRQ 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 + E FV LFLDV+N+L+ ++E+F+GTLT ++VYPREV+KAAL NAASV+LAHNHPSG P Sbjct: 121 QHESFVVLFLDVKNRLLSSQEMFRGTLTHTSVYPREVVKAALARNAASVLLAHNHPSGAP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT +L +AL ++D+R+LDHFVVAG ++SFA+HG++ Sbjct: 181 EPSEADLILTRSLVQALALVDVRVLDHFVVAGPHVHSFAEHGQL 224 >D5CP50.1 D5CP50_SIDLE DNA repair protein RadC Length = 224 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 125/224 (55%), Positives = 169/224 (75%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDW + +RPRE++ Q G AALSDAELLAIFLR G+ G +AV+LA + + RFGSL + Sbjct: 1 MAITDWAEGERPREKLLQRGAAALSDAELLAIFLRTGVVGMSAVDLARDLLVRFGSLTRM 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A E+D G+G A QL+AV+EMSRRA+ +M+ ++LNS RAV +YL+L+L R Sbjct: 61 FAASEKDFCDIHGMGRAKFVQLQAVVEMSRRALREEMQSGDVLNSPRAVREYLQLLLRSR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 +QE FVA+F+D ++++I EELF+GTLTQ++VYPREV+K AL HNAA++I AHNHPSG Sbjct: 121 QQEVFVAIFVDAQHRVICAEELFQGTLTQTSVYPREVVKRALHHNAAALIFAHNHPSGVA 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS D LT AL +AL+++D+R+LDHF+VAG SFA+ G + Sbjct: 181 EPSQSDQLLTDALMQALRLVDVRVLDHFIVAGAACLSFAEKGML 224 >D8NZN2.1 D8NZN2_RALSO DNA repair protein radC homolog, associated with replication fork Length = 224 Score = 251 bits (642), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 123/224 (54%), Positives = 164/224 (73%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ G AALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGSAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGCL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A +R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASQREFSAIHGMGPAKYAQLHALLEVARRALKEEITHGQPLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA++VIL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALYHNASAVILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V T++YSF +HGKM Sbjct: 181 EPSESDLMLTRELCRALALLDVRILDHMIVGRTQVYSFLEHGKM 224 >Q1H4K1.1 Y315_METFK UPF0758 protein Mfla_0315 Length = 224 Score = 251 bits (641), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 121/222 (54%), Positives = 163/222 (73%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M ITDWP+ +RPRE++ G ALSDAELLAIFLR G+ GK+AV+LA E ++RF SL+G+ Sbjct: 1 MAITDWPEGERPREKLRAAGAMALSDAELLAIFLRTGVAGKSAVDLARELLKRFSSLNGI 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A ++ G+G + QL+A+ EMSRRA+ QM+ R++L S +AV YL L + Sbjct: 61 FAASAEEICQVHGMGLSKFVQLQAIFEMSRRALLEQMQGRDVLTSPQAVRQYLSLRIGAL 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 +E F+ +FLD +++++ EELF GTLTQ++VYPREV+K ALRHNAA++I AHNHPSG P Sbjct: 121 PREVFIGIFLDAQHRVLAVEELFSGTLTQTSVYPREVVKCALRHNAAAMIFAHNHPSGVP 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHG 222 EPS D LT AL AL ++DIR+LDHFVVAG +L SF++ G Sbjct: 181 EPSQADRALTEALKAALNLIDIRVLDHFVVAGNQLVSFSERG 222 >Q8XWN0.1 Y2444_RALSO UPF0758 protein RSc2444 Length = 224 Score = 251 bits (640), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 162/224 (72%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ GPAALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAYGQTLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA+++IL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V +YSF +HGKM Sbjct: 181 EPSESDLVLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM 224 >D8N8A0.1 D8N8A0_RALSO DNA repair protein radC homolog, associated with replication fork Length = 224 Score = 250 bits (639), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/224 (54%), Positives = 162/224 (72%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ GPAALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIADWPAHERPREKLLTQGPAALSDAELLAIFLRVGMPGKSAVDLARELLAHFGSLGRL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A R+ G+GPA QL A+LE++RRA+ ++ + L S ++V D+L+L L HR Sbjct: 61 CHASRREFSAIHGMGPAKYAQLHALLEVARRALKEEIAHGQTLESPQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 QE F LFLDVR++LI EELF+GTLT++ VYPRE+ K AL HNA+++IL+HNHP+G Sbjct: 121 PQEVFACLFLDVRHRLIAWEELFQGTLTEARVYPREIAKRALHHNASALILSHNHPTGHV 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ DL LT L AL ++D+R+LDH +V +YSF +HGKM Sbjct: 181 EPSESDLMLTRELCRALALLDVRVLDHMIVGRAEVYSFLEHGKM 224 >B2UAP0.1 Y2712_RALPJ UPF0758 protein Rpic_2712 Length = 224 Score = 248 bits (633), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 120/224 (53%), Positives = 158/224 (70%) Query: 1 MVITDWPKEQRPRERMAQHGPAALSDAELLAIFLRVGIPGKNAVELASETIQRFGSLDGV 60 M I DWP +RPRE++ HGPAALSDAELLAIFLRVG+PGK+AV+LA E + FGSL + Sbjct: 1 MAIVDWPAHERPREKLLAHGPAALSDAELLAIFLRVGVPGKSAVDLARELLAHFGSLARL 60 Query: 61 LGAVERDLPLGKGLGPATCTQLRAVLEMSRRAIHTQMRLRELLNSTRAVGDYLKLMLAHR 120 A +++ G+GPA QL A+LE++RRA+ + S ++V D+L+L L HR Sbjct: 61 CHASQQEFSSINGMGPAKYAQLHALLEVARRALKEDFTQGQTFESAQSVKDFLRLTLGHR 120 Query: 121 EQECFVALFLDVRNKLIGTEELFKGTLTQSAVYPREVIKAALRHNAASVILAHNHPSGDP 180 E F FLDVR++LI EELF+GTLT++ VYPRE+ K AL HNAA+VILAHNHP+G+ Sbjct: 121 PHEVFACFFLDVRHRLIAWEELFRGTLTEARVYPREIAKRALHHNAAAVILAHNHPTGNT 180 Query: 181 EPSDHDLRLTAALDEALQMMDIRLLDHFVVAGTRLYSFADHGKM 224 EPS+ D+ LT L AL M+D+ +LDH +V +Y F +HGKM Sbjct: 181 EPSESDVILTRELCRALAMLDVIVLDHMIVGRNHVYGFLEHGKM 224